Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008108

Physical Location & Seq

Genomic Coordinates Forward (+)

17805693 .. 17807966

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25900.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTGATTTCACCCTTCTTGATTCTGAGACCGAGATCGAAGCCTCTCGAGGTACCAGTAGAACAAGAGGGAATATGTCAGAGGGATCTTCAATTGAAGGTCCCCAGAGGACGAGGTTGCTGCAACACCTTAAAGACCTACACGAGGAAAACAAGACACTCATGAAGCTTGTTGCAGACAAAGATAAGCGTATTGAATCGTACATGATAGATTTCGAAGAGCTAAATAGCTTGAAAATCATTGTCAATAAACTAGAGAAACAAAATTTCAAACTCACCCAAGCAAACACCCAGATGTTGCTAGAGCTTCGGAGTTTGAGAAACCATGCGCATAAAGTACAACATTCAAATTTGAGACCCATCCAAGAAACAATCCAGGTGCAGGAAGTACAACAGCCAAATTTGCAACCTGCCCAAGAAGTAATCCAGGTGAACGAAATACAACAGCCAAATTTGCAACCTGCCCAAGCAAGAATCCATGTTCAGGAATTTGAACCACCAAATATGCAAGCTGGCCAAGCAACAATCCAGATGCAGGAAGAAGAACCTGTTTTAGAAAATAGCCAGATTTTTCTGGAACTCAGATCAAATGTAGATATGTTAAGTTCTACTGATGAAGCAGTCCGTGAATGTATACATATGATCGAACAACTTCAAGCTTCAGGACCTCCTACAGATGAAGCAATCCAACAAGTCAAGGCAAAGCTTCAAGCTTTAGGTCCTATTACTATTGATGCCGTCCGGCAGATTAGAGCAGGGTTTCGTAAGCTTCAGAAATTGCAGTGTCCAAGGTGTGAATCTAATAACACTAAATTCAGTGTTTTGAAAGCCAAACGGATAGCTGGCCCCAGATATCACTGCAAAAATTGTAAAATGGAATGGACATTAGGGGGCAAAATAAAGAAACCTATTGTACTTGGAGGCGTGAATAGAAAAGATCTTCTTCAGCAGCGCGTTCAACGTGTTCAGCGTAGAAGGATGAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

330

Amino Acids

37.79

Weight (kDa)

9.23

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008108)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900
rosa_chinensis	RchiOBHm_Chr3g0485041
rosa_laevigata	RLG00000023173
rosa_multiflora	Rmu_sc0006040.1_g000014
rosa_roxburghii	Rroxscaffold_6G00397230
rosa_rugosa	Rorug03G0215400 Rorug03G0215500 Rorug03G0215600 Rorug03G0215600 Rorug03G0215600
rosa_samantha	Rh3AG265800 Rh3BG301400 Rh3CG299700 Rh3DG295500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	330
Acc36I	ACCTGC	2 cut(s)	418, 469
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	634
AccII	CGCG	1 cut(s)	954
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	6 cut(s)	265, 349, 400, 451, 488, 812
AcuI	CTGAAG	3 cut(s)	645, 755, 929
AfaI	GTAC	5 cut(s)	55, 203, 339, 390, 915
AfiI	CCNNNNNNNGG	4 cut(s)	145, 382, 484, 535
AflIII	ACRYGT	1 cut(s)	961
AjnI	CCWGG	2 cut(s)	375, 426
Alw26I	GTCTC	2 cut(s)	23, 349
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	2 cut(s)	514, 844
ApeKI	GCWGC	2 cut(s)	121, 949
ApoI	RAATTY	6 cut(s)	265, 349, 400, 451, 488, 812
Asp700I	GAANNNNTTC	1 cut(s)	651
Asp718I	GGTACC	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	331, 954
AspS9I	GGNCC	4 cut(s)	101, 665, 719, 845
AsuHPI	GGTGA	3 cut(s)	4, 268, 442
AsuII	TTCGAA	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	3 cut(s)	101, 665, 719
BalI	TGGCCA	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	108, 961
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	722
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	2 cut(s)	377, 428
BcoDI	GTCTC	2 cut(s)	23, 349
BfaI	CTAG	2 cut(s)	254, 302
BfmI	CTRYAG	1 cut(s)	672
BfuAI	ACCTGC	2 cut(s)	418, 469
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	2 cut(s)	122, 950
BlsI	GCNGC	2 cut(s)	123, 951
Bme1390I	CCNGG	2 cut(s)	377, 428
Bme18I	GGWCC	3 cut(s)	101, 665, 719
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	4 cut(s)	101, 665, 719, 845
BmiI	GGNNCC	3 cut(s)	55, 103, 847
BmrFI	CCNGG	2 cut(s)	377, 428
BmsI	GCATC	2 cut(s)	522, 724
Bpu14I	TTCGAA	1 cut(s)	216
BsaI	GGTCTC	2 cut(s)	23, 349
BsaJI	CCNNGG	1 cut(s)	788
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 382, 484, 535
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	377, 428
BseDI	CCNNGG	1 cut(s)	788
BseGI	GGATG	2 cut(s)	360, 984
BseLI	CCNNNNNNNGG	4 cut(s)	145, 382, 484, 535
BseMII	CTCAG	2 cut(s)	18, 595
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	108, 961
BsgI	GTGCAG	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	954
BshFI	GGCC	2 cut(s)	516, 846
BshNI	GGYRCC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	742
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	4 cut(s)	145, 382, 484, 535
BsmAI	GTCTC	2 cut(s)	23, 349
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	516, 846
Bso31I	GGTCTC	2 cut(s)	23, 349
BsoBI	CYCGRG	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	216
Bsp143I	GATC	5 cut(s)	36, 86, 584, 642, 937
BspANI	GGCC	2 cut(s)	516, 846
BspCNI	CTCAG	2 cut(s)	19, 594
BspFNI	CGCG	1 cut(s)	954
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	55, 103, 847
BspMI	ACCTGC	2 cut(s)	418, 469
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	213
BspT104I	TTCGAA	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	2 cut(s)	23, 349
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	788
BssMI	GATC	5 cut(s)	36, 86, 584, 642, 937
BssNAI	GTATAC	1 cut(s)	635
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	788
Bst1107I	GTATAC	1 cut(s)	635
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	2 cut(s)	377, 428
Bst6I	CTCTTC	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	510, 514, 844
BstDEI	CTNAG	2 cut(s)	27, 581
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	360, 984
BstFNI	CGCG	1 cut(s)	954
BstHHI	GCGC	2 cut(s)	331, 954
BstKTI	GATC	5 cut(s)	39, 89, 587, 645, 940
BstMAI	GTCTC	2 cut(s)	23, 349
BstMBI	GATC	5 cut(s)	36, 86, 584, 642, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	403, 454, 518
BstNI	CCWGG	2 cut(s)	377, 428
BstSCI	CCNGG	2 cut(s)	375, 426
BstSFI	CTRYAG	1 cut(s)	672
BstUI	CGCG	1 cut(s)	954
BstV1I	GCAGC	2 cut(s)	108, 961
BstX2I	RGATCY	2 cut(s)	86, 937
BstYI	RGATCY	2 cut(s)	86, 937
BstZ17I	GTATAC	1 cut(s)	635
BsuRI	GGCC	2 cut(s)	516, 846
BtsCI	GGATG	2 cut(s)	360, 984
BtsI	GCAGTG	2 cut(s)	788, 856
BtsIMutI	CAGTG	3 cut(s)	788, 823, 856
BveI	ACCTGC	2 cut(s)	418, 469
Cac8I	GCNNGC	3 cut(s)	510, 514, 844
CciI	TCATGA	1 cut(s)	162
CfoI	GCGC	2 cut(s)	331, 954
Cfr13I	GGNCC	4 cut(s)	101, 665, 719, 845
Csp6I	GTAC	5 cut(s)	54, 202, 338, 389, 914
CviAII	CATG	4 cut(s)	163, 205, 326, 479
CviQI	GTAC	5 cut(s)	54, 202, 338, 389, 914
DdeI	CTNAG	2 cut(s)	27, 581
DpnI	GATC	5 cut(s)	38, 88, 586, 644, 939
DpnII	GATC	5 cut(s)	36, 86, 584, 642, 937
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	788
Eco31I	GGTCTC	2 cut(s)	23, 349
Eco32I	GATATC	1 cut(s)	854
Eco47I	GGWCC	3 cut(s)	101, 665, 719
Eco57I	CTGAAG	3 cut(s)	645, 755, 929
Eco88I	CYCGRG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	3 cut(s)	101, 665, 719
EcoRII	CCWGG	2 cut(s)	375, 426
EcoRV	GATATC	1 cut(s)	854
EcoT14I	CCWWGG	1 cut(s)	788
ErhI	CCWWGG	1 cut(s)	788
FaeI	CATG	4 cut(s)	166, 208, 329, 482
FalI	AAGNNNNNCTT	2 cut(s)	927, 959
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	4 cut(s)	162, 204, 325, 478
FauNDI	CATATG	1 cut(s)	639
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	2 cut(s)	122, 950
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	122, 950
FspAI	RTGCGCAY	1 cut(s)	330
FspBI	CTAG	2 cut(s)	254, 302
FspI	TGCGCA	1 cut(s)	330
GlaI	GCGC	2 cut(s)	330, 953
GluI	GCNGC	2 cut(s)	122, 950
HaeIII	GGCC	2 cut(s)	516, 846
HapII	CCGG	1 cut(s)	742
HhaI	GCGC	2 cut(s)	331, 954
Hin1II	CATG	4 cut(s)	166, 208, 329, 482
Hin6I	GCGC	2 cut(s)	329, 952
HinP1I	GCGC	2 cut(s)	329, 952
HindIII	AAGCTT	5 cut(s)	167, 657, 704, 711, 767
HinfI	GANTC	4 cut(s)	23, 197, 474, 797
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	3 cut(s)	4, 268, 442
Hpy166II	GTNNAC	2 cut(s)	433, 635
Hpy188I	TCNGA	5 cut(s)	28, 82, 312, 584, 774
Hpy188III	TCNNGA	7 cut(s)	20, 48, 163, 485, 529, 575, 663
Hpy8I	GTNNAC	2 cut(s)	433, 635
HpyAV	CCTTC	3 cut(s)	26, 92, 969
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	9 cut(s)	124, 176, 382, 406, 457, 508, 535, 781, 861
HpyF10VI	GCNNNNNNNGC	3 cut(s)	403, 454, 518
HpyF3I	CTNAG	2 cut(s)	27, 581
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	4 cut(s)	166, 208, 329, 482
HspAI	GCGC	2 cut(s)	329, 952
KpnI	GGTACC	1 cut(s)	57
Kzo9I	GATC	5 cut(s)	36, 86, 584, 642, 937
LguI	GCTCTTC	1 cut(s)	213
Lsp1109I	GCAGC	2 cut(s)	108, 961
LweI	GCATC	2 cut(s)	522, 724
MaeI	CTAG	2 cut(s)	254, 302
MaeII	ACGT	1 cut(s)	961
MalI	GATC	5 cut(s)	38, 88, 586, 644, 939
MboI	GATC	5 cut(s)	36, 86, 584, 642, 937
MboII	GAAGA	6 cut(s)	81, 230, 551, 554, 932, 935
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	2 cut(s)	86, 937
MlsI	TGGCCA	1 cut(s)	516
MluNI	TGGCCA	1 cut(s)	516
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	9 cut(s)	44, 55, 62, 76, 102, 108, 139, 678, 914
Mox20I	TGGCCA	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	651
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	2 cut(s)	132, 602
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	516
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	2 cut(s)	377, 428
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	2 cut(s)	377, 428
MvnI	CGCG	1 cut(s)	954
MwoI	GCNNNNNNNGC	3 cut(s)	403, 454, 518
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	5 cut(s)	36, 86, 584, 642, 937
NlaIII	CATG	4 cut(s)	166, 208, 329, 482
NlaIV	GGNNCC	3 cut(s)	55, 103, 847
NsbI	TGCGCA	1 cut(s)	330
NspV	TTCGAA	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	48
PagI	TCATGA	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	967
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	4 cut(s)	23, 197, 474, 797
PkrI	GCNGC	2 cut(s)	123, 951
PpuMI	RGGWCCY	3 cut(s)	101, 665, 719
Psp5II	RGGWCCY	3 cut(s)	101, 665, 719
Psp6I	CCWGG	2 cut(s)	375, 426
PspGI	CCWGG	2 cut(s)	375, 426
PspN4I	GGNNCC	3 cut(s)	55, 103, 847
PspPI	GGNCC	4 cut(s)	101, 665, 719, 845
PspPPI	RGGWCCY	3 cut(s)	101, 665, 719
PsuI	RGATCY	2 cut(s)	86, 937
RsaI	GTAC	5 cut(s)	55, 203, 339, 390, 915
RsaNI	GTAC	5 cut(s)	54, 202, 338, 389, 914
RseI	CAYNNNNRTG	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	132, 602
SatI	GCNGC	2 cut(s)	122, 950
Sau3AI	GATC	5 cut(s)	36, 86, 584, 642, 937
Sau96I	GGNCC	4 cut(s)	101, 665, 719, 845
ScrFI	CCNGG	2 cut(s)	377, 428
SfaNI	GCATC	2 cut(s)	522, 724
SfcI	CTRYAG	1 cut(s)	672
Sfr274I	CTCGAG	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	3 cut(s)	101, 665, 719
SlaI	CTCGAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
SspMI	CTAG	2 cut(s)	254, 302
StyD4I	CCNGG	2 cut(s)	375, 426
StyI	CCWWGG	1 cut(s)	788
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	4 cut(s)	39, 49, 216, 645
TaqII	GACCGA	1 cut(s)	47
TatI	WGTACW	3 cut(s)	337, 388, 913
TfiI	GAWTC	4 cut(s)	23, 197, 474, 797
Tru1I	TTAA	2 cut(s)	132, 602
Tru9I	TTAA	2 cut(s)	132, 602
TscAI	CASTG	3 cut(s)	788, 823, 863
TseI	GCWGC	2 cut(s)	121, 949
TspDTI	ATGAA	3 cut(s)	179, 630, 693
TspGWI	ACGGA	2 cut(s)	614, 850
TspRI	CASTG	3 cut(s)	788, 823, 863
VpaK11BI	GGWCC	3 cut(s)	101, 665, 719
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	6 cut(s)	265, 349, 400, 451, 488, 812
XhoI	CTCGAG	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	2 cut(s)	254, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.