Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008108

Physical Location & Seq

Genomic Coordinates Reverse (-)

18890972 .. 18893301

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACTGATTTCACCCTTATCGATTCTGAGACCGAGATCGTAGCCTCTCGAGGTACCAGTAGAACAAGAGTGAATATGGCTGAGGGATCTTCAATTGAAGGTCCCCAGGGGAAGAGGTTGCTGCAGCACCTTAAAGACCTACACGAGGAGAACAAGACACTCATGAAGCTCGTTGCAGACAAAGATAAGCGTATTGAATCGTACATGATAGATTTTGAAGAGCTGAATAGCTTGAAAATCATTGTCAATAAACTAGAGAAACAAAATTTCAAACTCACCCAAGCAAACAGCCAGATGTTGCAAGAGCTACGGAGTTTGAGAAACCATGTGCAGAAAGTACAACAACCAAATTTACCACCCGCCCAAGAAATAAACCAGGTGCAGGAAGTACAACAACCAAATTTGCAACCCCAAGAAATAATCCAGGTGCAGGAAGCACAACAACCAAATTTGCAACCTGCCCAAGCAAGAGTCCAGGTGCAGGAATTAGAACCACCAAATTTGCAAGCTGCCCAAGCAAGTAGCCAGATGCAGGAAGAAGAACATGACCTAGAAAATAGCCAGATATTGCTGGAACTCAAATCACATGATCATATGTTAAGTTCTACTGACGAAGCAGTCCGGGAGTGTATAGATATGATCGAAAAACTTCAAGCTTTGGGCCCTCCTACTAATGAAGCAATCCAACAAGTTAAGGCAAAGCTTCAAGCTTTGGGCCCTCTTACGATTGACGCAGTCCGGCAGATTAGAGTGGGGTTTCGTAAGCTTCAGAAATTGCAGTGTCCAAGGTGTGAATCTAATAACACTAAATTCAGTGTTTTGAAAGCCAAAAGAATATCTGCCCCAAGGTATCACTGCAAAAATTGTAAAATGGAATGGACATTAGGGGCGAAATCAGGAAACCTATTGTGCTTGGAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

307

Amino Acids

34.91

Weight (kDa)

6.42

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	258 - 297	3.7e-13	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008108)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900
rosa_chinensis	RchiOBHm_Chr3g0485041
rosa_laevigata	RLG00000023173
rosa_multiflora	Rmu_sc0006040.1_g000014
rosa_roxburghii	Rroxscaffold_6G00397230
rosa_rugosa	Rorug03G0215400 Rorug03G0215500 Rorug03G0215600 Rorug03G0215600 Rorug03G0215600
rosa_samantha	Rh3AG265800 Rh3BG301400 Rh3CG299700 Rh3DG295500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	466
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	6 cut(s)	265, 349, 400, 448, 499, 809
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	4 cut(s)	55, 203, 339, 390
AfiI	CCNNNNNNNGG	5 cut(s)	145, 382, 430, 481, 532
AgsI	TTSAA	9 cut(s)	93, 98, 197, 218, 235, 271, 653, 707, 823
AjnI	CCWGG	4 cut(s)	105, 375, 423, 474
AluBI	AGCT	9 cut(s)	169, 223, 231, 307, 509, 656, 703, 710, 766
AluI	AGCT	9 cut(s)	169, 223, 231, 307, 509, 656, 703, 710, 766
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	2 cut(s)	661, 715
ApaI	GGGCCC	2 cut(s)	665, 719
ApeKI	GCWGC	3 cut(s)	121, 124, 509
ApoI	RAATTY	6 cut(s)	265, 349, 400, 448, 499, 809
Asp700I	GAANNNNTTC	1 cut(s)	648
Asp718I	GGTACC	1 cut(s)	53
AspS9I	GGNCC	5 cut(s)	101, 661, 662, 715, 716
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	2 cut(s)	4, 268
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	2 cut(s)	665, 719
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	665, 719
BauI	CACGAG	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	108, 136, 496
BciT130I	CCWGG	4 cut(s)	107, 377, 425, 476
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	2 cut(s)	254, 551
BfmI	CTRYAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	3 cut(s)	122, 125, 510
BlsI	GCNGC	3 cut(s)	123, 126, 511
Bme1390I	CCNGG	5 cut(s)	107, 377, 425, 476, 623
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	5 cut(s)	101, 661, 662, 715, 716
BmiI	GGNNCC	4 cut(s)	55, 103, 663, 717
BmrFI	CCNGG	5 cut(s)	107, 377, 425, 476, 623
BmsI	GCATC	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	623
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	105, 106, 785, 845
Bsc4I	CCNNNNNNNGG	5 cut(s)	145, 382, 430, 481, 532
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	4 cut(s)	107, 377, 425, 476
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	105, 106, 785, 845
BseLI	CCNNNNNNNGG	5 cut(s)	145, 382, 430, 481, 532
BseMII	CTCAG	2 cut(s)	18, 72
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	2 cut(s)	665, 719
BseXI	GCAGC	3 cut(s)	108, 136, 496
BsgI	GTGCAG	4 cut(s)	350, 401, 449, 500
BshFI	GGCC	2 cut(s)	663, 717
BshNI	GGYRCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	622, 739
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	5 cut(s)	145, 382, 430, 481, 532
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	663, 717
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	48
Bsp120I	GGGCCC	2 cut(s)	661, 715
Bsp1286I	GDGCHC	2 cut(s)	665, 719
Bsp143I	GATC	4 cut(s)	36, 86, 589, 639
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	663, 717
BspCNI	CTCAG	2 cut(s)	19, 73
BspDI	ATCGAT	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	4 cut(s)	55, 103, 663, 717
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	4 cut(s)	105, 106, 785, 845
BssMI	GATC	4 cut(s)	36, 86, 589, 639
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	785, 845
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	4 cut(s)	107, 377, 425, 476
Bst6I	CTCTTC	2 cut(s)	107, 213
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	27, 81
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstKTI	GATC	4 cut(s)	39, 89, 592, 642
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	4 cut(s)	36, 86, 589, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	4 cut(s)	107, 377, 425, 476
BstSCI	CCNGG	5 cut(s)	105, 375, 423, 474, 621
BstSFI	CTRYAG	1 cut(s)	122
BstSLI	GKGCMC	2 cut(s)	665, 719
BstV1I	GCAGC	3 cut(s)	108, 136, 496
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	663, 717
BsuTUI	ATCGAT	1 cut(s)	21
BtsI	GCAGTG	2 cut(s)	785, 853
BtsIMutI	CAGTG	3 cut(s)	785, 820, 853
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	5 cut(s)	101, 661, 662, 715, 716
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	740
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	4 cut(s)	54, 202, 338, 389
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	5 cut(s)	163, 205, 326, 545, 587
CviQI	GTAC	4 cut(s)	54, 202, 338, 389
DdeI	CTNAG	2 cut(s)	27, 81
DpnI	GATC	4 cut(s)	38, 88, 591, 641
DpnII	GATC	4 cut(s)	36, 86, 589, 639
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
Eam1104I	CTCTTC	2 cut(s)	107, 213
EarI	CTCTTC	2 cut(s)	107, 213
Eco130I	CCWWGG	2 cut(s)	785, 845
Eco24I	GRGCYC	2 cut(s)	665, 719
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	3 cut(s)	101, 662, 716
EcoRII	CCWGG	4 cut(s)	105, 375, 423, 474
EcoT14I	CCWWGG	2 cut(s)	785, 845
EcoT38I	GRGCYC	2 cut(s)	665, 719
ErhI	CCWWGG	2 cut(s)	785, 845
FaeI	CATG	5 cut(s)	166, 208, 329, 548, 590
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	5 cut(s)	162, 204, 325, 544, 586
FauI	CCCGC	1 cut(s)	367
FauNDI	CATATG	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	122, 125, 510
FriOI	GRGCYC	2 cut(s)	665, 719
Fsp4HI	GCNGC	3 cut(s)	122, 125, 510
FspBI	CTAG	2 cut(s)	254, 551
GluI	GCNGC	3 cut(s)	122, 125, 510
HaeIII	GGCC	2 cut(s)	663, 717
HapII	CCGG	2 cut(s)	622, 739
HgaI	GACGC	1 cut(s)	740
Hin1II	CATG	5 cut(s)	166, 208, 329, 548, 590
HindIII	AAGCTT	4 cut(s)	654, 701, 708, 764
HinfI	GANTC	4 cut(s)	23, 197, 471, 794
HpaII	CCGG	2 cut(s)	622, 739
HphI	GGTGA	2 cut(s)	4, 268
Hpy188I	TCNGA	2 cut(s)	28, 771
Hpy188III	TCNNGA	3 cut(s)	48, 163, 897
HpyAV	CCTTC	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	2 cut(s)	27, 81
Hsp92II	CATG	5 cut(s)	166, 208, 329, 548, 590
KpnI	GGTACC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	36, 86, 589, 639
LguI	GCTCTTC	1 cut(s)	213
Lsp1109I	GCAGC	3 cut(s)	108, 136, 496
LweI	GCATC	1 cut(s)	519
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	2 cut(s)	254, 551
MalI	GATC	4 cut(s)	38, 88, 591, 641
MboI	GATC	4 cut(s)	36, 86, 589, 639
MboII	GAAGA	5 cut(s)	81, 124, 230, 548, 551
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	665, 719
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	709
MnlI	CCTC	8 cut(s)	44, 55, 76, 108, 139, 675, 729, 910
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	3 cut(s)	132, 599, 693
MspI	CCGG	2 cut(s)	622, 739
MspR9I	CCNGG	5 cut(s)	107, 377, 425, 476, 623
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	4 cut(s)	107, 377, 425, 476
MwoI	GCNNNNNNNGC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	623
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	4 cut(s)	36, 86, 589, 639
NlaIII	CATG	5 cut(s)	166, 208, 329, 548, 590
NlaIV	GGNNCC	4 cut(s)	55, 103, 663, 717
PaeR7I	CTCGAG	1 cut(s)	48
PagI	TCATGA	1 cut(s)	162
PasI	CCCWGGG	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	3 cut(s)	23, 197, 794
PflFI	GACNNNGTC	1 cut(s)	734
PfoI	TCCNGGA	1 cut(s)	621
PkrI	GCNGC	3 cut(s)	123, 126, 511
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	4 cut(s)	105, 375, 423, 474
PspGI	CCWGG	4 cut(s)	105, 375, 423, 474
PspN4I	GGNNCC	4 cut(s)	55, 103, 663, 717
PspOMI	GGGCCC	2 cut(s)	661, 715
PspPI	GGNCC	5 cut(s)	101, 661, 662, 715, 716
PspPPI	RGGWCCY	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	86
PsyI	GACNNNGTC	1 cut(s)	734
RsaI	GTAC	4 cut(s)	55, 203, 339, 390
RsaNI	GTAC	4 cut(s)	54, 202, 338, 389
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	132, 599, 693
SatI	GCNGC	3 cut(s)	122, 125, 510
Sau3AI	GATC	4 cut(s)	36, 86, 589, 639
Sau96I	GGNCC	5 cut(s)	101, 661, 662, 715, 716
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	5 cut(s)	107, 377, 425, 476, 623
SduI	GDGCHC	2 cut(s)	665, 719
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	1 cut(s)	122
Sfr274I	CTCGAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	2 cut(s)	254, 551
StyD4I	CCNGG	5 cut(s)	105, 375, 423, 474, 621
StyI	CCWWGG	2 cut(s)	785, 845
TaqI	TCGA	3 cut(s)	21, 49, 642
TaqII	GACCGA	1 cut(s)	47
TatI	WGTACW	2 cut(s)	337, 388
TfiI	GAWTC	3 cut(s)	23, 197, 794
Tru1I	TTAA	3 cut(s)	132, 599, 693
Tru9I	TTAA	3 cut(s)	132, 599, 693
TscAI	CASTG	3 cut(s)	785, 820, 860
TseI	GCWGC	3 cut(s)	121, 124, 509
TspDTI	ATGAA	2 cut(s)	179, 690
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	3 cut(s)	785, 820, 860
Tth111I	GACNNNGTC	1 cut(s)	734
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	6 cut(s)	265, 349, 400, 448, 499, 809
XhoI	CTCGAG	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	2 cut(s)	254, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.