Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008108

Physical Location & Seq

Genomic Coordinates Forward (+)

19545897 .. 19546472

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0215400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGAGACATGAATTGCTTGTTGTGTAATAATGGGCTAGAGAATGGAGTCCATCTATTTACAGAATGCAATTATGCCAAGGAAGTATGGGCTGCTGCTGCACTGCCAATGTCTACGACAGTAGTAACAGATTTGAAGGATTGGCTTGTAAGCTTAGTTTCGCTGCTCAGTAAAGAATTGCTTTTAATGGGTATATGGACTGTGTGGAAGAATAGAAATTCACAGCTATGGGAGGGCACTAAACAACACCCAGTTGAGGCTAATATGGTAGCTATGTGTTGGCTCACAGAGTTTTCCAAGGAAAATGGTAATGAAAAAGCTCCCAGCATGCAAAGAGGAGAGTGGATTGCACCAAATGCGGGCTGGCTGAAGTGTAATAGTGATGGGTCTTTTATTTCTTCCACCAAACGAGGAGGCATGGGAATTGTGATCCGAGATCATGATGGCATTTTCAAGGCAGCAGCCTTGGGACAACTTGACCAAGTAGTATCCCCCTTCCATGCCGAGCTGTTAGCTCTCTATGAAGGTATGAAAATGGCTCAGAGTTTACACTATGATAGAGCTAGTAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

191

Amino Acids

21.25

Weight (kDa)

5.94

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	126 - 186	2.3e-10	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008108)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900
rosa_chinensis	RchiOBHm_Chr3g0485041
rosa_laevigata	RLG00000023173
rosa_multiflora	Rmu_sc0006040.1_g000014
rosa_roxburghii	Rroxscaffold_6G00397230
rosa_rugosa	Rorug03G0215400 Rorug03G0215500 Rorug03G0215600 Rorug03G0215600 Rorug03G0215600
rosa_samantha	Rh3AG265800 Rh3BG301400 Rh3CG299700 Rh3DG295500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	2 cut(s)	217, 570
AcuI	CTGAAG	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	256, 359
AgsI	TTSAA	2 cut(s)	136, 454
AluBI	AGCT	7 cut(s)	153, 226, 272, 320, 508, 515, 563
AluI	AGCT	7 cut(s)	153, 226, 272, 320, 508, 515, 563
AlwI	GGATC	1 cut(s)	424
ApeKI	GCWGC	6 cut(s)	92, 95, 98, 163, 458, 461
ApoI	RAATTY	2 cut(s)	217, 570
BaeGI	GKGCMC	1 cut(s)	239
BbvI	GCAGC	6 cut(s)	79, 82, 85, 150, 470, 473
BccI	CCATC	3 cut(s)	60, 377, 437
BciVI	GTATCC	1 cut(s)	499
BfaI	CTAG	2 cut(s)	38, 564
BfuI	GTATCC	1 cut(s)	499
BisI	GCNGC	6 cut(s)	93, 96, 99, 164, 459, 462
BlsI	GCNGC	6 cut(s)	94, 97, 100, 165, 460, 463
BmrI	ACTGGG	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	78, 297, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 359
Bse1I	ACTGG	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	78, 297, 465
BseLI	CCNNNNNNNGG	2 cut(s)	256, 359
BseMII	CTCAG	2 cut(s)	181, 554
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	2 cut(s)	351, 426
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	6 cut(s)	79, 82, 85, 150, 470, 473
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	2 cut(s)	256, 359
BsmFI	GGGAC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	429, 436
BspACI	CCGC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	180, 553
BspHI	TCATGA	1 cut(s)	439
BspPI	GGATC	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	3 cut(s)	78, 297, 465
BssMI	GATC	2 cut(s)	429, 436
BssT1I	CCWWGG	3 cut(s)	78, 297, 465
Bst4CI	ACNGT	2 cut(s)	121, 202
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	3 cut(s)	329, 361, 365
BstDEI	CTNAG	3 cut(s)	154, 167, 540
BstKTI	GATC	2 cut(s)	432, 439
BstMBI	GATC	2 cut(s)	429, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 356
BstNSI	RCATGY	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	6 cut(s)	79, 82, 85, 150, 470, 473
BsuI	GTATCC	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	3 cut(s)	329, 361, 365
CciI	TCATGA	1 cut(s)	439
CviAII	CATG	5 cut(s)	10, 328, 418, 440, 500
DdeI	CTNAG	3 cut(s)	154, 167, 540
DpnI	GATC	2 cut(s)	431, 438
DpnII	GATC	2 cut(s)	429, 436
Eco130I	CCWWGG	3 cut(s)	78, 297, 465
Eco57I	CTGAAG	1 cut(s)	389
EcoT14I	CCWWGG	3 cut(s)	78, 297, 465
ErhI	CCWWGG	3 cut(s)	78, 297, 465
FaeI	CATG	5 cut(s)	13, 331, 421, 443, 503
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	5 cut(s)	9, 327, 417, 439, 499
FauI	CCCGC	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	6 cut(s)	93, 96, 99, 164, 459, 462
Fsp4HI	GCNGC	6 cut(s)	93, 96, 99, 164, 459, 462
FspBI	CTAG	2 cut(s)	38, 564
GluI	GCNGC	6 cut(s)	93, 96, 99, 164, 459, 462
GsaI	CCCAGC	1 cut(s)	327
Hin1II	CATG	5 cut(s)	13, 331, 421, 443, 503
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	114, 548
Hpy188I	TCNGA	2 cut(s)	434, 543
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	2 cut(s)	114, 548
HpyAV	CCTTC	3 cut(s)	130, 505, 518
HpyCH4III	ACNGT	2 cut(s)	121, 202
HpyCH4V	TGCA	4 cut(s)	69, 101, 331, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 356
HpyF3I	CTNAG	3 cut(s)	154, 167, 540
Hsp92II	CATG	5 cut(s)	13, 331, 421, 443, 503
Kzo9I	GATC	2 cut(s)	429, 436
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	3 cut(s)	264, 337, 349
Lsp1109I	GCAGC	6 cut(s)	79, 82, 85, 150, 470, 473
MaeI	CTAG	2 cut(s)	38, 564
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	431, 438
MboI	GATC	2 cut(s)	429, 436
MboII	GAAGA	2 cut(s)	220, 390
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	6 cut(s)	13, 70, 176, 217, 423, 570
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	226, 250, 329, 404, 407
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	226
Mva1269I	GAATGC	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	98, 356
NdeII	GATC	2 cut(s)	429, 436
NlaIII	CATG	5 cut(s)	13, 331, 421, 443, 503
NmeAIII	GCCGAG	1 cut(s)	529
NspI	RCATGY	1 cut(s)	331
PaeI	GCATGC	1 cut(s)	331
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	94, 97, 100, 165, 460, 463
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	6 cut(s)	93, 96, 99, 164, 459, 462
Sau3AI	GATC	2 cut(s)	429, 436
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	8 cut(s)	155, 228, 274, 322, 510, 517, 529, 565
SmiMI	CAYNNNNRTG	1 cut(s)	226
SphI	GCATGC	1 cut(s)	331
Sse9I	AATT	6 cut(s)	13, 70, 176, 217, 423, 570
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	2 cut(s)	38, 564
StyI	CCWWGG	3 cut(s)	78, 297, 465
TaaI	ACNGT	2 cut(s)	121, 202
TasI	AATT	6 cut(s)	13, 70, 176, 217, 423, 570
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	6 cut(s)	92, 95, 98, 163, 458, 461
TspDTI	ATGAA	4 cut(s)	26, 327, 537, 545
TspRI	CASTG	1 cut(s)	108
XapI	RAATTY	2 cut(s)	217, 570
XceI	RCATGY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	2 cut(s)	38, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.