Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008108

Physical Location & Seq

Genomic Coordinates Forward (+)

30289898 .. 30292806

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG301400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACTGAATTCACCCTTATTGATTCTGAGACCGAGATCGAAGCCTCTCGAGGTCAAAATCAATTTGTTGTCTTCTTCTTTGATCAAGTTTTTGGTACCAGTAGAACAAGAGTGAATATGGCTGAGGGATCTTCCCAGGGGAAGAGGTTGCTGCAGCACCTTAAAGACCTACACGAGGAAAACAAGACACTCATGAAGCTCGTTGCAGACAAAGATAAGCGTATTGAATCGTACATGATAGATTTTGAAGAGCTGAATAGCTTGAAAATCATTGTCAATAAACTAGAGAAACAAAATTTCAAACTCACCCAAGCAAACAGCCAGATGTTGCAAGAGCTACGGAGTTTGAGAGACCATGTGCAGAAAGTACAACAACCAAATTTACCACCCGCCCAAGAAATAAACCAGGTGCAGGAAGTACAACAACCAAATTTGCAACCCCAAGAAATAATCCAGGTGCTGGAAGCACAACGACCAAATTTGCAACCTGCCCAAGCAAGAGTCCAGGTGCAGGAATTAGAACCACCAAATTTGCAAGCTGCCGAAGCAAGTAGCCAGATGCAGGAAGAAGAACCTGACCTAGAAAATAGCCAGATATTGCTGGAACTCAAATCACGTGATCATATGTTAAGTTCTACTGACGAAGCAGTCCGGGAGTGTATAGATATGATCGAAAAACTTCAAGGTTTGCCAAATAGTAACCTGACGTATAATGTGGAATTCTGGATTAATAGAGATCCTCACTATAACAACACTTTTTACATAATTTTCCTCCAGCTTTGGGCCCTCCTACTAATGAAGCAATCCAACAAGTTAAGGCAAAGCTTCAAGGTCTGTCAACGGACTCAACGTCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

286

Amino Acids

33.5

Weight (kDa)

5.23

Isoelectric Point (pI)

65.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008108)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900
rosa_chinensis	RchiOBHm_Chr3g0485041
rosa_laevigata	RLG00000023173
rosa_multiflora	Rmu_sc0006040.1_g000014
rosa_roxburghii	Rroxscaffold_6G00397230
rosa_rugosa	Rorug03G0215400 Rorug03G0215500 Rorug03G0215600 Rorug03G0215600 Rorug03G0215600
rosa_samantha	Rh3AG265800 Rh3BG301400 Rh3CG299700 Rh3DG295500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
Acc36I	ACCTGC	1 cut(s)	496
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	460
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	2 cut(s)	136, 731
AcsI	RAATTY	7 cut(s)	8, 295, 379, 430, 478, 529, 719
AcvI	CACGTG	1 cut(s)	617
AfaI	GTAC	4 cut(s)	97, 233, 369, 420
AfiI	CCNNNNNNNGG	6 cut(s)	175, 412, 460, 511, 562, 781
AgsI	TTSAA	6 cut(s)	227, 248, 265, 301, 683, 829
AhdI	GACNNNNNGTC	1 cut(s)	849
AjnI	CCWGG	4 cut(s)	135, 405, 453, 504
AluBI	AGCT	7 cut(s)	199, 253, 261, 337, 539, 778, 825
AluI	AGCT	7 cut(s)	199, 253, 261, 337, 539, 778, 825
Alw26I	GTCTC	2 cut(s)	23, 345
AlwI	GGATC	2 cut(s)	136, 731
AlwNI	CAGNNNCTG	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	1 cut(s)	783
ApaI	GGGCCC	1 cut(s)	787
ApeKI	GCWGC	3 cut(s)	151, 154, 539
ApoI	RAATTY	7 cut(s)	8, 295, 379, 430, 478, 529, 719
AseI	ATTAAT	1 cut(s)	729
Asp700I	GAANNNNTTC	1 cut(s)	678
Asp718I	GGTACC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	783, 784
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	4, 298
AvaI	CYCGRG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	787
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	787
BauI	CACGAG	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	64
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	138, 166, 526
BciT130I	CCWGG	4 cut(s)	137, 407, 455, 506
BclI	TGATCA	2 cut(s)	82, 619
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	2 cut(s)	23, 345
BfaI	CTAG	2 cut(s)	284, 581
BfmI	CTRYAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	496
BisI	GCNGC	3 cut(s)	152, 155, 540
BlsI	GCNGC	3 cut(s)	153, 156, 541
Bme1390I	CCNGG	5 cut(s)	137, 407, 455, 506, 653
BmeRI	GACNNNNNGTC	1 cut(s)	849
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	783, 784
BmiI	GGNNCC	2 cut(s)	97, 785
BmrFI	CCNGG	5 cut(s)	137, 407, 455, 506, 653
BmsI	GCATC	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	758
Bpu10I	CCTNAGC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	653
BsaAI	YACGTR	1 cut(s)	617
BsaI	GGTCTC	2 cut(s)	23, 345
BsaJI	CCNNGG	2 cut(s)	135, 136
Bsc4I	CCNNNNNNNGG	6 cut(s)	175, 412, 460, 511, 562, 781
Bse1I	ACTGG	1 cut(s)	99
BseBI	CCWGG	4 cut(s)	137, 407, 455, 506
BseDI	CCNNGG	2 cut(s)	135, 136
BseLI	CCNNNNNNNGG	6 cut(s)	175, 412, 460, 511, 562, 781
BseMII	CTCAG	2 cut(s)	18, 114
BseNI	ACTGG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	3 cut(s)	138, 166, 526
BsgI	GTGCAG	3 cut(s)	380, 431, 530
BshFI	GGCC	1 cut(s)	785
BshNI	GGYRCC	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	652
BslI	CCNNNNNNNGG	6 cut(s)	175, 412, 460, 511, 562, 781
BsmAI	GTCTC	2 cut(s)	23, 345
BsnI	GGCC	1 cut(s)	785
Bso31I	GGTCTC	2 cut(s)	23, 345
BsoBI	CYCGRG	1 cut(s)	48
Bsp120I	GGGCCC	1 cut(s)	783
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp143I	GATC	6 cut(s)	36, 82, 128, 619, 669, 736
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	1 cut(s)	785
BspCNI	CTCAG	2 cut(s)	19, 115
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	97, 785
BspMAI	CTGCAG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	2 cut(s)	136, 731
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	95
BspTNI	GGTCTC	2 cut(s)	23, 345
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	135, 136
BssMI	GATC	6 cut(s)	36, 82, 128, 619, 669, 736
BssSI	CACGAG	1 cut(s)	173
Bst2BI	CACGAG	1 cut(s)	173
Bst2UI	CCWGG	4 cut(s)	137, 407, 455, 506
Bst6I	CTCTTC	2 cut(s)	137, 243
BstBAI	YACGTR	1 cut(s)	617
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	27, 123
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstKTI	GATC	6 cut(s)	39, 85, 131, 622, 672, 739
BstMAI	GTCTC	2 cut(s)	23, 345
BstMBI	GATC	6 cut(s)	36, 82, 128, 619, 669, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	4 cut(s)	137, 407, 455, 506
BstSCI	CCNGG	5 cut(s)	135, 405, 453, 504, 651
BstSFI	CTRYAG	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	787
BstV1I	GCAGC	3 cut(s)	138, 166, 526
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	2 cut(s)	128, 736
BstYI	RGATCY	2 cut(s)	128, 736
BsuRI	GGCC	1 cut(s)	785
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	1 cut(s)	460
CciI	TCATGA	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	783, 784
CsiI	ACCWGGT	1 cut(s)	405
Csp6I	GTAC	4 cut(s)	96, 232, 368, 419
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviAII	CATG	3 cut(s)	193, 235, 356
CviQI	GTAC	4 cut(s)	96, 232, 368, 419
DdeI	CTNAG	2 cut(s)	27, 123
DpnI	GATC	6 cut(s)	38, 84, 130, 621, 671, 738
DpnII	GATC	6 cut(s)	36, 82, 128, 619, 669, 736
DrdI	GACNNNNNNGTC	1 cut(s)	647
DriI	GACNNNNNGTC	1 cut(s)	849
DseDI	GACNNNNNNGTC	1 cut(s)	647
Eam1104I	CTCTTC	2 cut(s)	137, 243
Eam1105I	GACNNNNNGTC	1 cut(s)	849
EarI	CTCTTC	2 cut(s)	137, 243
Eco24I	GRGCYC	1 cut(s)	787
Eco31I	GGTCTC	2 cut(s)	23, 345
Eco72I	CACGTG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	784
EcoRI	GAATTC	2 cut(s)	8, 719
EcoRII	CCWGG	4 cut(s)	135, 405, 453, 504
EcoT38I	GRGCYC	1 cut(s)	787
FaeI	CATG	3 cut(s)	196, 238, 359
FatI	CATG	3 cut(s)	192, 234, 355
FauI	CCCGC	1 cut(s)	397
FauNDI	CATATG	1 cut(s)	624
FbaI	TGATCA	2 cut(s)	82, 619
Fnu4HI	GCNGC	3 cut(s)	152, 155, 540
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	3 cut(s)	152, 155, 540
FspBI	CTAG	2 cut(s)	284, 581
GluI	GCNGC	3 cut(s)	152, 155, 540
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	1 cut(s)	785
HapII	CCGG	1 cut(s)	652
Hin1II	CATG	3 cut(s)	196, 238, 359
HincII	GTYRAC	1 cut(s)	839
HindII	GTYRAC	1 cut(s)	839
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	4 cut(s)	23, 227, 501, 844
HpaII	CCGG	1 cut(s)	652
HphI	GGTGA	2 cut(s)	4, 298
Hpy166II	GTNNAC	1 cut(s)	839
Hpy188I	TCNGA	2 cut(s)	28, 860
Hpy188III	TCNNGA	3 cut(s)	48, 193, 724
Hpy8I	GTNNAC	1 cut(s)	839
HpyCH4IV	ACGT	3 cut(s)	616, 707, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	2 cut(s)	27, 123
HpySE526I	ACGT	3 cut(s)	616, 707, 850
Hsp92II	CATG	3 cut(s)	196, 238, 359
KpnI	GGTACC	1 cut(s)	99
Ksp22I	TGATCA	2 cut(s)	82, 619
Kzo9I	GATC	6 cut(s)	36, 82, 128, 619, 669, 736
LguI	GCTCTTC	1 cut(s)	243
Lsp1109I	GCAGC	3 cut(s)	138, 166, 526
LweI	GCATC	1 cut(s)	549
MabI	ACCWGGT	1 cut(s)	405
MaeI	CTAG	2 cut(s)	284, 581
MaeII	ACGT	3 cut(s)	616, 707, 850
MaeIII	GTNAC	1 cut(s)	698
MalI	GATC	6 cut(s)	38, 84, 130, 621, 671, 738
MboI	GATC	6 cut(s)	36, 82, 128, 619, 669, 736
MboII	GAAGA	7 cut(s)	64, 67, 123, 154, 260, 578, 581
MflI	RGATCY	2 cut(s)	128, 736
MhlI	GDGCHC	1 cut(s)	787
MlyI	GAGTC	2 cut(s)	510, 838
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	8 cut(s)	44, 55, 118, 138, 169, 750, 782, 797
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	4 cut(s)	162, 629, 729, 815
MspI	CCGG	1 cut(s)	652
MspR9I	CCNGG	5 cut(s)	137, 407, 455, 506, 653
MvaI	CCWGG	4 cut(s)	137, 407, 455, 506
MwoI	GCNNNNNNNGC	1 cut(s)	545
NciI	CCSGG	1 cut(s)	653
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	6 cut(s)	36, 82, 128, 619, 669, 736
NlaIII	CATG	3 cut(s)	196, 238, 359
NlaIV	GGNNCC	2 cut(s)	97, 785
PaeR7I	CTCGAG	1 cut(s)	48
PagI	TCATGA	1 cut(s)	192
PasI	CCCWGGG	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	23, 227
PflMI	CCANNNNNTGG	1 cut(s)	460
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	3 cut(s)	153, 156, 541
PleI	GAGTC	2 cut(s)	509, 838
PmaCI	CACGTG	1 cut(s)	617
PmlI	CACGTG	1 cut(s)	617
PpsI	GAGTC	2 cut(s)	509, 838
Ppu21I	YACGTR	1 cut(s)	617
PshBI	ATTAAT	1 cut(s)	729
Psp6I	CCWGG	4 cut(s)	135, 405, 453, 504
PspCI	CACGTG	1 cut(s)	617
PspGI	CCWGG	4 cut(s)	135, 405, 453, 504
PspN4I	GGNNCC	2 cut(s)	97, 785
PspOMI	GGGCCC	1 cut(s)	783
PspPI	GGNCC	2 cut(s)	783, 784
PstI	CTGCAG	1 cut(s)	156
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	2 cut(s)	128, 736
RsaI	GTAC	4 cut(s)	97, 233, 369, 420
RsaNI	GTAC	4 cut(s)	96, 232, 368, 419
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	162, 629, 729, 815
SatI	GCNGC	3 cut(s)	152, 155, 540
Sau3AI	GATC	6 cut(s)	36, 82, 128, 619, 669, 736
Sau96I	GGNCC	2 cut(s)	783, 784
SchI	GAGTC	2 cut(s)	510, 838
ScrFI	CCNGG	5 cut(s)	137, 407, 455, 506, 653
SduI	GDGCHC	1 cut(s)	787
SexAI	ACCWGGT	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	549
SfcI	CTRYAG	1 cut(s)	152
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	284, 581
StyD4I	CCNGG	5 cut(s)	135, 405, 453, 504, 651
TaiI	ACGT	3 cut(s)	619, 710, 853
TaqI	TCGA	3 cut(s)	39, 49, 672
TaqII	GACCGA	1 cut(s)	47
TatI	WGTACW	2 cut(s)	367, 418
TfiI	GAWTC	2 cut(s)	23, 227
Tru1I	TTAA	4 cut(s)	162, 629, 729, 815
Tru9I	TTAA	4 cut(s)	162, 629, 729, 815
TseI	GCWGC	3 cut(s)	151, 154, 539
TspDTI	ATGAA	2 cut(s)	209, 812
TspGWI	ACGGA	2 cut(s)	355, 856
Van91I	CCANNNNNTGG	1 cut(s)	460
VspI	ATTAAT	1 cut(s)	729
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	7 cut(s)	8, 295, 379, 430, 478, 529, 719
XhoI	CTCGAG	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	2 cut(s)	284, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.