Rh3AG265800

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008108
Physical Location & Seq
Forward (+)
29887577 .. 29889663
2087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG265800.1

Sequence Viewer

Length: 1140 bp
ATGCAAATGGTTGCAGATAGTTTCTGGAGCTCGAAAACCAAGGCAAAGCAGGAGTCTTGTCTCAGATTGAAAGGAGCCGACTGTCTTTTTCATCCTTTTTTTCATCAAATTTCTTATCTTTACCTCCATCTTATTCAAATCCATTACAGCCCCATGACTGATTTCACCCTTATTGATTCTGAGACCGAGATCGAAGCCTCTCGAGGTACCAGTAGAACAAGAGTGAATATGGCTGAGGGATCTTCAATTGAAGGCCCCCAGGGGAAGAGGTTGCTGCAGCACCTTAAAGACCTACATGAGGAAAACAAGACACTCATGAAGCTCGTTGCGGACAAAGAAAAGCGTATTGAATCGTACATGATAGATTTTGAAGAGCTGAATGGCTTGAAAATCATTGTCAATAAACTAGAGAAACAAAATTTCGTACTCACCCAAGCAAACAGCCAGATGTTGCAAGAGCTACGGAGTTTGAGAAACCATGTGCAGAAAGTAGAACAACCAACTTTACCACCCGCCCAAGAAATAAACCAGGTGCAGGAAGCACAACAACCAAATTTGCAACCCCAAGAAATAATCCAGGTGCAGGAAGCACAACAACCAAATTTGCAACCTGCCCAAGCAAGAGTCCAGGTGCAGGAATTAGAACCACCAAGTTTGCAAGCTGCCCAAGCAAGTAGCCAGATGCAGGAAGAAGAACTTGACCTAGAAAATAGCCAGATATTGCTGGAACTCAAATCACATGATCATATGTTAAGTTCTACTGACGAAGCAGTCCGGGAGTGTATAGATATGATCGAAAAACTTCAAGCTTTGGGCCCTCCTACTAATGAAGCAATCCAACAAGTTAAGGCAAAGCTTCAAGCTTTGGGCCCTCTTACTATTGATGCAGTCCGGCAGATTAGAGTGGGGTTTCGTAAGCTCCAGAAATTGCAGTGTCCAAGGTGTGAATCTAATAACACTAAATTCAGTGTTTTGAAAGCCAAAAGAATATCTGCCCCAAGGTATCACTGCAAAAATTGTAAAATGGAATGGACATTAGGGGGCGAAATAAGGAAACCTATTGTGCTTGGAGGCGTGAATAGAAGAGATCTTCTTCAGCAGCGCATCCAACGTGTTCAGCGTAGAAGGATGAAGACTTGA

Protein Analysis

379

Amino Acids

43.58

Weight (kDa)

8.72

Isoelectric Point (pI)

63.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 309 - 362 9.8e-17 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 770
Acc36I ACCTGC 1 cut(s) 619
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 2 cut(s) 329, 513
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 5 cut(s) 108, 418, 553, 601, 962
AcuI CTGAAG 1 cut(s) 1079
AfaI GTAC 3 cut(s) 208, 356, 426
AfiI CCNNNNNNNGG 5 cut(s) 298, 535, 583, 634, 685
AflIII ACRYGT 1 cut(s) 1111
AjnI CCWGG 4 cut(s) 258, 528, 576, 627
AluBI AGCT 9 cut(s) 30, 322, 376, 460, 662, 809, 856, 863, 919
AluI AGCT 9 cut(s) 30, 322, 376, 460, 662, 809, 856, 863, 919
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 65, 176
AlwI GGATC 1 cut(s) 247
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 3 cut(s) 253, 814, 868
ApaI GGGCCC 2 cut(s) 818, 872
ApeKI GCWGC 4 cut(s) 274, 277, 662, 1099
ApoI RAATTY 5 cut(s) 108, 418, 553, 601, 962
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
Asp700I GAANNNNTTC 1 cut(s) 801
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 1104
AspS9I GGNCC 5 cut(s) 254, 814, 815, 868, 869
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 2 cut(s) 157, 421
AvaI CYCGRG 1 cut(s) 201
BaeGI GKGCMC 2 cut(s) 818, 872
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 3 cut(s) 32, 818, 872
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 261, 289, 649, 1111
BccI CCATC 1 cut(s) 135
BciT130I CCWGG 4 cut(s) 260, 530, 578, 629
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 776
BcoDI GTCTC 2 cut(s) 65, 176
BfaI CTAG 2 cut(s) 407, 704
BfmI CTRYAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 619
BglII AGATCT 1 cut(s) 1087
BisI GCNGC 4 cut(s) 275, 278, 663, 1100
BlsI GCNGC 4 cut(s) 276, 279, 664, 1101
Bme1390I CCNGG 5 cut(s) 260, 530, 578, 629, 776
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 5 cut(s) 254, 814, 815, 868, 869
BmiI GGNNCC 5 cut(s) 76, 208, 256, 816, 870
BmrFI CCNGG 5 cut(s) 260, 530, 578, 629, 776
BmsI GCATC 3 cut(s) 672, 874, 1113
BpmI CTGGAG 2 cut(s) 46, 905
Bpu10I CCTNAGC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 776
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 5 cut(s) 39, 258, 259, 938, 998
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 535, 583, 634, 685
Bse1I ACTGG 1 cut(s) 210
BseBI CCWGG 4 cut(s) 260, 530, 578, 629
BseDI CCNNGG 5 cut(s) 39, 258, 259, 938, 998
BseGI GGATG 3 cut(s) 91, 1104, 1134
BseLI CCNNNNNNNGG 5 cut(s) 298, 535, 583, 634, 685
BseMII CTCAG 3 cut(s) 76, 171, 225
BseNI ACTGG 1 cut(s) 210
BseSI GKGCMC 2 cut(s) 818, 872
BseXI GCAGC 4 cut(s) 261, 289, 649, 1111
BsgI GTGCAG 4 cut(s) 503, 554, 602, 653
BshFI GGCC 3 cut(s) 255, 816, 870
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 2 cut(s) 775, 892
BslI CCNNNNNNNGG 5 cut(s) 298, 535, 583, 634, 685
BsmAI GTCTC 2 cut(s) 65, 176
BsnI GGCC 3 cut(s) 255, 816, 870
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 201
Bsp120I GGGCCC 2 cut(s) 814, 868
Bsp1286I GDGCHC 3 cut(s) 32, 818, 872
Bsp143I GATC 5 cut(s) 189, 239, 742, 792, 1087
BspACI CCGC 2 cut(s) 329, 513
BspANI GGCC 3 cut(s) 255, 816, 870
BspCNI CTCAG 3 cut(s) 75, 172, 226
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 5 cut(s) 76, 208, 256, 816, 870
BspMAI CTGCAG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 5 cut(s) 39, 258, 259, 938, 998
BssMI GATC 5 cut(s) 189, 239, 742, 792, 1087
BssT1I CCWWGG 3 cut(s) 39, 938, 998
Bst2UI CCWGG 4 cut(s) 260, 530, 578, 629
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 3 cut(s) 260, 366, 1078
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 3 cut(s) 62, 180, 234
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 91, 1104, 1134
BstHHI GCGC 1 cut(s) 1104
BstKTI GATC 5 cut(s) 192, 242, 745, 795, 1090
BstMAI GTCTC 2 cut(s) 65, 176
BstMBI GATC 5 cut(s) 189, 239, 742, 792, 1087
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNI CCWGG 4 cut(s) 260, 530, 578, 629
BstSCI CCNGG 5 cut(s) 258, 528, 576, 627, 774
BstSFI CTRYAG 1 cut(s) 275
BstSLI GKGCMC 2 cut(s) 818, 872
BstV1I GCAGC 4 cut(s) 261, 289, 649, 1111
BstX2I RGATCY 2 cut(s) 239, 1087
BstYI RGATCY 2 cut(s) 239, 1087
BsuRI GGCC 3 cut(s) 255, 816, 870
BtsCI GGATG 3 cut(s) 91, 1104, 1134
BtsI GCAGTG 2 cut(s) 938, 1006
BtsIMutI CAGTG 3 cut(s) 938, 973, 1006
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 660
CciI TCATGA 1 cut(s) 315
CfoI GCGC 1 cut(s) 1104
Cfr13I GGNCC 5 cut(s) 254, 814, 815, 868, 869
CsiI ACCWGGT 1 cut(s) 528
Csp6I GTAC 3 cut(s) 207, 355, 425
CspCI CAANNNNNGTGG 2 cut(s) 636, 671
CviAII CATG 6 cut(s) 154, 296, 316, 358, 479, 740
CviQI GTAC 3 cut(s) 207, 355, 425
DdeI CTNAG 3 cut(s) 62, 180, 234
DpnI GATC 5 cut(s) 191, 241, 744, 794, 1089
DpnII GATC 5 cut(s) 189, 239, 742, 792, 1087
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
Eam1104I CTCTTC 3 cut(s) 260, 366, 1078
EarI CTCTTC 3 cut(s) 260, 366, 1078
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 3 cut(s) 39, 938, 998
Eco24I GRGCYC 3 cut(s) 32, 818, 872
Eco31I GGTCTC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 1079
Eco88I CYCGRG 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 30
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 3 cut(s) 254, 815, 869
EcoRII CCWGG 4 cut(s) 258, 528, 576, 627
EcoT14I CCWWGG 3 cut(s) 39, 938, 998
EcoT38I GRGCYC 3 cut(s) 32, 818, 872
ErhI CCWWGG 3 cut(s) 39, 938, 998
FaeI CATG 6 cut(s) 157, 299, 319, 361, 482, 743
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FatI CATG 6 cut(s) 153, 295, 315, 357, 478, 739
FauI CCCGC 1 cut(s) 520
FauNDI CATATG 1 cut(s) 747
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 4 cut(s) 275, 278, 663, 1100
FokI GGATG 2 cut(s) 78, 1091
FriOI GRGCYC 3 cut(s) 32, 818, 872
Fsp4HI GCNGC 4 cut(s) 275, 278, 663, 1100
FspBI CTAG 2 cut(s) 407, 704
GlaI GCGC 1 cut(s) 1103
GluI GCNGC 4 cut(s) 275, 278, 663, 1100
GsuI CTGGAG 2 cut(s) 46, 905
HaeIII GGCC 3 cut(s) 255, 816, 870
HapII CCGG 2 cut(s) 775, 892
HhaI GCGC 1 cut(s) 1104
Hin1II CATG 6 cut(s) 157, 299, 319, 361, 482, 743
Hin6I GCGC 1 cut(s) 1102
HinP1I GCGC 1 cut(s) 1102
HindIII AAGCTT 3 cut(s) 807, 854, 861
HinfI GANTC 5 cut(s) 53, 176, 350, 624, 947
HpaII CCGG 2 cut(s) 775, 892
HphI GGTGA 2 cut(s) 157, 421
Hpy188I TCNGA 2 cut(s) 65, 181
Hpy188III TCNNGA 4 cut(s) 25, 201, 316, 922
HpyAV CCTTC 2 cut(s) 245, 1119
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 1111
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 3 cut(s) 62, 180, 234
HpySE526I ACGT 1 cut(s) 1111
Hsp92II CATG 6 cut(s) 157, 299, 319, 361, 482, 743
HspAI GCGC 1 cut(s) 1102
KpnI GGTACC 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 5 cut(s) 189, 239, 742, 792, 1087
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 3 cut(s) 27, 74, 924
Lsp1109I GCAGC 4 cut(s) 261, 289, 649, 1111
LweI GCATC 3 cut(s) 672, 874, 1113
MabI ACCWGGT 1 cut(s) 528
MaeI CTAG 2 cut(s) 407, 704
MaeII ACGT 1 cut(s) 1111
MalI GATC 5 cut(s) 191, 241, 744, 794, 1089
MboI GATC 5 cut(s) 189, 239, 742, 792, 1087
MboII GAAGA 8 cut(s) 234, 277, 383, 701, 704, 1082, 1085, 1095
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 2 cut(s) 239, 1087
MhlI GDGCHC 3 cut(s) 32, 818, 872
MluCI AATT 9 cut(s) 108, 246, 418, 553, 601, 638, 926, 962, 1015
MlyI GAGTC 2 cut(s) 62, 633
MmeI TCCRAC 2 cut(s) 862, 1132
MnlI CCTC 9 cut(s) 134, 197, 208, 229, 261, 292, 828, 882, 1064
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 3 cut(s) 285, 752, 846
MspI CCGG 2 cut(s) 775, 892
MspR9I CCNGG 5 cut(s) 260, 530, 578, 629, 776
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 4 cut(s) 260, 530, 578, 629
MwoI GCNNNNNNNGC 1 cut(s) 668
NciI CCSGG 1 cut(s) 776
NdeI CATATG 1 cut(s) 747
NdeII GATC 5 cut(s) 189, 239, 742, 792, 1087
NlaIII CATG 6 cut(s) 157, 299, 319, 361, 482, 743
NlaIV GGNNCC 5 cut(s) 76, 208, 256, 816, 870
PaeR7I CTCGAG 1 cut(s) 201
PagI TCATGA 1 cut(s) 315
PasI CCCWGGG 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 1117
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 3 cut(s) 176, 350, 947
PfoI TCCNGGA 1 cut(s) 774
PkrI GCNGC 4 cut(s) 276, 279, 664, 1101
PleI GAGTC 2 cut(s) 61, 632
PpsI GAGTC 2 cut(s) 61, 632
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 4 cut(s) 258, 528, 576, 627
PspGI CCWGG 4 cut(s) 258, 528, 576, 627
PspN4I GGNNCC 5 cut(s) 76, 208, 256, 816, 870
PspOMI GGGCCC 2 cut(s) 814, 868
PspPI GGNCC 5 cut(s) 254, 814, 815, 868, 869
PstI CTGCAG 1 cut(s) 279
PsuI RGATCY 2 cut(s) 239, 1087
RsaI GTAC 3 cut(s) 208, 356, 426
RsaNI GTAC 3 cut(s) 207, 355, 425
SacI GAGCTC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 3 cut(s) 285, 752, 846
SatI GCNGC 4 cut(s) 275, 278, 663, 1100
Sau3AI GATC 5 cut(s) 189, 239, 742, 792, 1087
Sau96I GGNCC 5 cut(s) 254, 814, 815, 868, 869
SchI GAGTC 2 cut(s) 62, 633
ScrFI CCNGG 5 cut(s) 260, 530, 578, 629, 776
SduI GDGCHC 3 cut(s) 32, 818, 872
SexAI ACCWGGT 1 cut(s) 528
SfaNI GCATC 3 cut(s) 672, 874, 1113
SfcI CTRYAG 1 cut(s) 275
Sfr274I CTCGAG 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 9 cut(s) 108, 246, 418, 553, 601, 638, 926, 962, 1015
SsiI CCGC 2 cut(s) 329, 513
SspMI CTAG 2 cut(s) 407, 704
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 5 cut(s) 258, 528, 576, 627, 774
StyI CCWWGG 3 cut(s) 39, 938, 998
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 1114
TaqI TCGA 4 cut(s) 32, 192, 202, 795
TaqII GACCGA 1 cut(s) 200
TasI AATT 9 cut(s) 108, 246, 418, 553, 601, 638, 926, 962, 1015
TfiI GAWTC 3 cut(s) 176, 350, 947
Tru1I TTAA 3 cut(s) 285, 752, 846
Tru9I TTAA 3 cut(s) 285, 752, 846
TscAI CASTG 3 cut(s) 938, 973, 1013
TseI GCWGC 4 cut(s) 274, 277, 662, 1099
TspDTI ATGAA 4 cut(s) 80, 92, 332, 843
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 3 cut(s) 938, 973, 1013
XagI CCTNNNNNAGG 1 cut(s) 296
XapI RAATTY 5 cut(s) 108, 418, 553, 601, 962
XhoI CTCGAG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 2 cut(s) 407, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.