Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008108

Physical Location & Seq

Genomic Coordinates Reverse (-)

19564075 .. 19564742

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0215500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCCGATCGCGTTCCCCCGGATCACCCTTCAGCACTATACCGCTGTCTGCATAACTGCCATACTTGTTCTCAATGCCAAGGATCCAATAAAGGATTACTGGAAAAGAAAGTTTGGTGCTCGTTCTTCATCACATGCCAATGCTATTAGTTCTGCTGCTGTTGTTGCCGATACTGGTGCTGCAGCCGCCACTACTGCTAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

68

Amino Acids

7.15

Weight (kDa)

9.74

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008108)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900
rosa_chinensis	RchiOBHm_Chr3g0485041
rosa_laevigata	RLG00000023173
rosa_multiflora	Rmu_sc0006040.1_g000014
rosa_roxburghii	Rroxscaffold_6G00397230
rosa_rugosa	Rorug03G0215400 Rorug03G0215500 Rorug03G0215600 Rorug03G0215600 Rorug03G0215600
rosa_samantha	Rh3AG265800 Rh3BG301400 Rh3CG299700 Rh3DG295500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	42, 186
AclWI	GGATC	3 cut(s)	29, 77, 90
AcuI	CTGAAG	1 cut(s)	14
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	3 cut(s)	29, 77, 90
ApeKI	GCWGC	3 cut(s)	155, 179, 182
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	142, 166, 194
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcnI	CCSGG	1 cut(s)	19
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	4 cut(s)	156, 180, 183, 186
BlsI	GCNGC	4 cut(s)	157, 181, 184, 187
Bme1390I	CCNGG	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	17, 78
Bse1I	ACTGG	2 cut(s)	104, 178
BseDI	CCNNGG	2 cut(s)	17, 78
BseNI	ACTGG	2 cut(s)	104, 178
BseXI	GCAGC	3 cut(s)	142, 166, 194
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	6, 21, 82
BspACI	CCGC	2 cut(s)	42, 186
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	3 cut(s)	29, 77, 90
BsrI	ACTGG	2 cut(s)	104, 178
BssECI	CCNNGG	2 cut(s)	17, 78
BssMI	GATC	3 cut(s)	6, 21, 82
BssT1I	CCWWGG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	9, 24, 85
BstMBI	GATC	3 cut(s)	6, 21, 82
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 185, 194
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	142, 166, 194
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	2 cut(s)	185, 204
CviKI_1	RGCY	2 cut(s)	185, 204
DpnI	GATC	3 cut(s)	8, 23, 84
DpnII	GATC	3 cut(s)	6, 21, 82
Eco130I	CCWWGG	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	137
FaiI	YATR	4 cut(s)	39, 53, 62, 135
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	156, 180, 183, 186
Fsp4HI	GCNGC	4 cut(s)	156, 180, 183, 186
GluI	GCNGC	4 cut(s)	156, 180, 183, 186
HapII	CCGG	1 cut(s)	19
Hin1II	CATG	1 cut(s)	137
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	51, 182
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 185, 194
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	6, 21, 82
LpnPI	CCDG	3 cut(s)	32, 85, 159
Lsp1109I	GCAGC	3 cut(s)	142, 166, 194
MalI	GATC	3 cut(s)	8, 23, 84
MboI	GATC	3 cut(s)	6, 21, 82
MboII	GAAGA	1 cut(s)	117
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	121
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	2 cut(s)	44, 204
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	164, 185, 194
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	6, 21, 82
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	157, 181, 184, 187
Ple19I	CGATCG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	138
SatI	GCNGC	4 cut(s)	156, 180, 183, 186
Sau3AI	GATC	3 cut(s)	6, 21, 82
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	1 cut(s)	206
SfcI	CTRYAG	1 cut(s)	180
SgeI	CNNG	9 cut(s)	22, 30, 31, 77, 91, 112, 132, 146, 186
SmiMI	CAYNNNNRTG	1 cut(s)	138
SsiI	CCGC	2 cut(s)	42, 186
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	78
TauI	GCSGC	1 cut(s)	188
TseI	GCWGC	3 cut(s)	155, 179, 182
TspDTI	ATGAA	1 cut(s)	117
XceI	RCATGY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.