Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006040.1

Orthogroup ID

OG0008108

Physical Location & Seq

Genomic Coordinates Reverse (-)

59092 .. 61038

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006040.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgactgatttcacccttattgattctgagaccgagatcgaagcctctcgaggtaccagtagaacaagagtgaatatggctgagggatcttcatttgaaggcccccaggggaagaggttgctgcagcaccttaaagacctacacgaggaaaacaagacactcatgaagctcgttgcagacaaagaaaagcgtattgaatcgtacatgatagattttgaagagctgaatggcttgaaaatcattgtcaataaactagagaaacaaaatttcatactcacccaagcaaacagccagatgttgcaagagctacggagtttgagaaaccatgtgcagaaagtagaacaaccaaatttaacacccgcccaagaaataaaccaggtgcacgaagtacaacaaccaaatttgcaaccccaagaaataatccaggtgcaggaagcacaacaaccaaatttgcaacctgcccaagcaagagtccaggtgcagcaattagaaccaccaagtttgcaagctgcccaagcaagtagccagatgcaggaagaagaacttgacctagaaaatagccagatattgctggaactcaaatcacatgatcatatgttaagttctactgacgaagcagtccaggagtgtatagatatgatcgaaaaacttcaagctttgggccctcctactaatgaagcaatccaacaagttaaggcaaagcttcaagctttgggccctcttactattgatgcagtccggcagattagagtggggtttcgtaagcttcagaaattgcagtgtccaaggtgtgaatctaataacactaaattcagtgttttgaaagccaaaagaatatctgccccaaggtatcactgcaaaaattgtaaaatggaatggacattagggggcgaaataaggaaacctattgtgcttggaggcgtgaatagaagagatcttcttcagcagcgcatccaacgtgttcagcgtagaaggatgaagacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

328

Amino Acids

37.63

Weight (kDa)

8.52

Isoelectric Point (pI)

62.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008108)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900
rosa_chinensis	RchiOBHm_Chr3g0485041
rosa_laevigata	RLG00000023173
rosa_multiflora	Rmu_sc0006040.1_g000014
rosa_roxburghii	Rroxscaffold_6G00397230
rosa_rugosa	Rorug03G0215400 Rorug03G0215500 Rorug03G0215600 Rorug03G0215600 Rorug03G0215600
rosa_samantha	Rh3AG265800 Rh3BG301400 Rh3CG299700 Rh3DG295500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	466
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	5 cut(s)	265, 349, 400, 448, 809
AcuI	CTGAAG	2 cut(s)	752, 926
AfaI	GTAC	3 cut(s)	55, 203, 390
AfiI	CCNNNNNNNGG	3 cut(s)	145, 430, 532
AflIII	ACRYGT	1 cut(s)	958
AgsI	TTSAA	7 cut(s)	98, 197, 218, 235, 653, 707, 823
AjnI	CCWGG	5 cut(s)	105, 375, 423, 474, 621
AluBI	AGCT	8 cut(s)	169, 223, 307, 509, 656, 703, 710, 766
AluI	AGCT	8 cut(s)	169, 223, 307, 509, 656, 703, 710, 766
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	3 cut(s)	100, 661, 715
ApaI	GGGCCC	2 cut(s)	665, 719
ApaLI	GTGCAC	1 cut(s)	380
ApeKI	GCWGC	5 cut(s)	121, 124, 481, 509, 946
ApoI	RAATTY	5 cut(s)	265, 349, 400, 448, 809
Asp700I	GAANNNNTTC	1 cut(s)	648
Asp718I	GGTACC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	951
AspS9I	GGNCC	5 cut(s)	101, 661, 662, 715, 716
AsuHPI	GGTGA	2 cut(s)	4, 268
AvaI	CYCGRG	1 cut(s)	48
BaeGI	GKGCMC	3 cut(s)	384, 665, 719
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	665, 719
BauI	CACGAG	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	5 cut(s)	108, 136, 493, 496, 958
BciT130I	CCWGG	5 cut(s)	107, 377, 425, 476, 623
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	2 cut(s)	254, 551
BfmI	CTRYAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	466
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	5 cut(s)	122, 125, 482, 510, 947
BlsI	GCNGC	5 cut(s)	123, 126, 483, 511, 948
Bme1390I	CCNGG	5 cut(s)	107, 377, 425, 476, 623
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	5 cut(s)	101, 661, 662, 715, 716
BmiI	GGNNCC	4 cut(s)	55, 103, 663, 717
BmrFI	CCNGG	5 cut(s)	107, 377, 425, 476, 623
BmsI	GCATC	3 cut(s)	519, 721, 960
Bpu10I	CCTNAGC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	105, 106, 785, 845
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 430, 532
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	5 cut(s)	107, 377, 425, 476, 623
BseDI	CCNNGG	4 cut(s)	105, 106, 785, 845
BseGI	GGATG	2 cut(s)	951, 981
BseLI	CCNNNNNNNGG	3 cut(s)	145, 430, 532
BseMII	CTCAG	2 cut(s)	18, 72
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	3 cut(s)	384, 665, 719
BseXI	GCAGC	5 cut(s)	108, 136, 493, 496, 958
BsgI	GTGCAG	3 cut(s)	350, 449, 500
BshFI	GGCC	3 cut(s)	102, 663, 717
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	739
BslI	CCNNNNNNNGG	3 cut(s)	145, 430, 532
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	3 cut(s)	102, 663, 717
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	48
Bsp120I	GGGCCC	2 cut(s)	661, 715
Bsp1286I	GDGCHC	3 cut(s)	384, 665, 719
Bsp143I	GATC	5 cut(s)	36, 86, 589, 639, 934
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	3 cut(s)	102, 663, 717
BspCNI	CTCAG	2 cut(s)	19, 73
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	4 cut(s)	55, 103, 663, 717
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	4 cut(s)	105, 106, 785, 845
BssMI	GATC	5 cut(s)	36, 86, 589, 639, 934
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	785, 845
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	5 cut(s)	107, 377, 425, 476, 623
Bst6I	CTCTTC	3 cut(s)	107, 213, 925
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	27, 81
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	951, 981
BstHHI	GCGC	1 cut(s)	951
BstKTI	GATC	5 cut(s)	39, 89, 592, 642, 937
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	5 cut(s)	36, 86, 589, 639, 934
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	5 cut(s)	107, 377, 425, 476, 623
BstSCI	CCNGG	5 cut(s)	105, 375, 423, 474, 621
BstSFI	CTRYAG	1 cut(s)	122
BstSLI	GKGCMC	3 cut(s)	384, 665, 719
BstV1I	GCAGC	5 cut(s)	108, 136, 493, 496, 958
BstX2I	RGATCY	2 cut(s)	86, 934
BstYI	RGATCY	2 cut(s)	86, 934
BsuRI	GGCC	3 cut(s)	102, 663, 717
BtsCI	GGATG	2 cut(s)	951, 981
BtsI	GCAGTG	2 cut(s)	785, 853
BtsIMutI	CAGTG	3 cut(s)	785, 820, 853
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	162
CfoI	GCGC	1 cut(s)	951
Cfr13I	GGNCC	5 cut(s)	101, 661, 662, 715, 716
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	54, 202, 389
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	4 cut(s)	163, 205, 326, 587
CviQI	GTAC	3 cut(s)	54, 202, 389
DdeI	CTNAG	2 cut(s)	27, 81
DpnI	GATC	5 cut(s)	38, 88, 591, 641, 936
DpnII	GATC	5 cut(s)	36, 86, 589, 639, 934
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
Eam1104I	CTCTTC	3 cut(s)	107, 213, 925
EarI	CTCTTC	3 cut(s)	107, 213, 925
Eco130I	CCWWGG	2 cut(s)	785, 845
Eco24I	GRGCYC	2 cut(s)	665, 719
Eco31I	GGTCTC	1 cut(s)	23
Eco57I	CTGAAG	2 cut(s)	752, 926
Eco88I	CYCGRG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	3 cut(s)	101, 662, 716
EcoRII	CCWGG	5 cut(s)	105, 375, 423, 474, 621
EcoT14I	CCWWGG	2 cut(s)	785, 845
EcoT38I	GRGCYC	2 cut(s)	665, 719
ErhI	CCWWGG	2 cut(s)	785, 845
FaeI	CATG	4 cut(s)	166, 208, 329, 590
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FatI	CATG	4 cut(s)	162, 204, 325, 586
FauI	CCCGC	1 cut(s)	367
FauNDI	CATATG	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	5 cut(s)	122, 125, 482, 510, 947
FokI	GGATG	1 cut(s)	938
FriOI	GRGCYC	2 cut(s)	665, 719
Fsp4HI	GCNGC	5 cut(s)	122, 125, 482, 510, 947
FspBI	CTAG	2 cut(s)	254, 551
GlaI	GCGC	1 cut(s)	950
GluI	GCNGC	5 cut(s)	122, 125, 482, 510, 947
HaeIII	GGCC	3 cut(s)	102, 663, 717
HapII	CCGG	1 cut(s)	739
HhaI	GCGC	1 cut(s)	951
Hin1II	CATG	4 cut(s)	166, 208, 329, 590
Hin6I	GCGC	1 cut(s)	949
HinP1I	GCGC	1 cut(s)	949
HindIII	AAGCTT	4 cut(s)	654, 701, 708, 764
HinfI	GANTC	4 cut(s)	23, 197, 471, 794
HpaII	CCGG	1 cut(s)	739
HphI	GGTGA	2 cut(s)	4, 268
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	28, 771
Hpy188III	TCNNGA	2 cut(s)	48, 163
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	92, 966
HpyCH4IV	ACGT	1 cut(s)	958
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	2 cut(s)	27, 81
HpySE526I	ACGT	1 cut(s)	958
Hsp92II	CATG	4 cut(s)	166, 208, 329, 590
HspAI	GCGC	1 cut(s)	949
KpnI	GGTACC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	5 cut(s)	36, 86, 589, 639, 934
LguI	GCTCTTC	1 cut(s)	213
Lsp1109I	GCAGC	5 cut(s)	108, 136, 493, 496, 958
LweI	GCATC	3 cut(s)	519, 721, 960
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	2 cut(s)	254, 551
MaeII	ACGT	1 cut(s)	958
MalI	GATC	5 cut(s)	38, 88, 591, 641, 936
MboI	GATC	5 cut(s)	36, 86, 589, 639, 934
MboII	GAAGA	8 cut(s)	81, 124, 230, 548, 551, 929, 932, 942
MflI	RGATCY	2 cut(s)	86, 934
MhlI	GDGCHC	3 cut(s)	384, 665, 719
MluCI	AATT	8 cut(s)	265, 349, 400, 448, 485, 773, 809, 862
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	2 cut(s)	709, 979
MnlI	CCTC	8 cut(s)	44, 55, 76, 108, 139, 675, 729, 911
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	4 cut(s)	132, 353, 599, 693
MspI	CCGG	1 cut(s)	739
MspR9I	CCNGG	5 cut(s)	107, 377, 425, 476, 623
MvaI	CCWGG	5 cut(s)	107, 377, 425, 476, 623
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	5 cut(s)	36, 86, 589, 639, 934
NlaIII	CATG	4 cut(s)	166, 208, 329, 590
NlaIV	GGNNCC	4 cut(s)	55, 103, 663, 717
PaeR7I	CTCGAG	1 cut(s)	48
PagI	TCATGA	1 cut(s)	162
PasI	CCCWGGG	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	964
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	3 cut(s)	23, 197, 794
PfoI	TCCNGGA	1 cut(s)	621
PkrI	GCNGC	5 cut(s)	123, 126, 483, 511, 948
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp6I	CCWGG	5 cut(s)	105, 375, 423, 474, 621
PspGI	CCWGG	5 cut(s)	105, 375, 423, 474, 621
PspN4I	GGNNCC	4 cut(s)	55, 103, 663, 717
PspOMI	GGGCCC	2 cut(s)	661, 715
PspPI	GGNCC	5 cut(s)	101, 661, 662, 715, 716
PstI	CTGCAG	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	86, 934
RsaI	GTAC	3 cut(s)	55, 203, 390
RsaNI	GTAC	3 cut(s)	54, 202, 389
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	4 cut(s)	132, 353, 599, 693
SatI	GCNGC	5 cut(s)	122, 125, 482, 510, 947
Sau3AI	GATC	5 cut(s)	36, 86, 589, 639, 934
Sau96I	GGNCC	5 cut(s)	101, 661, 662, 715, 716
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	5 cut(s)	107, 377, 425, 476, 623
SduI	GDGCHC	3 cut(s)	384, 665, 719
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	519, 721, 960
SfcI	CTRYAG	1 cut(s)	122
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	8 cut(s)	265, 349, 400, 448, 485, 773, 809, 862
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	2 cut(s)	254, 551
StyD4I	CCNGG	5 cut(s)	105, 375, 423, 474, 621
StyI	CCWWGG	2 cut(s)	785, 845
TaiI	ACGT	1 cut(s)	961
TaqI	TCGA	3 cut(s)	39, 49, 642
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	8 cut(s)	265, 349, 400, 448, 485, 773, 809, 862
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	3 cut(s)	23, 197, 794
Tru1I	TTAA	4 cut(s)	132, 353, 599, 693
Tru9I	TTAA	4 cut(s)	132, 353, 599, 693
TscAI	CASTG	3 cut(s)	785, 820, 860
TseI	GCWGC	5 cut(s)	121, 124, 481, 509, 946
TspDTI	ATGAA	4 cut(s)	81, 179, 259, 690
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	3 cut(s)	785, 820, 860
VneI	GTGCAC	1 cut(s)	380
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	5 cut(s)	265, 349, 400, 448, 809
XhoI	CTCGAG	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	2 cut(s)	254, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.