Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008108

Physical Location & Seq

Genomic Coordinates Forward (+)

19592471 .. 19597642

Gene Structure 5172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0215600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGGCGACGTACTTTCATGGTAACTCGGAAATCCAACCCCCCGACGGCGGCTTGCAGACTCTGGTTCTCATGAACCACGGTGGTTACGTCCAGTACTCGGATACTACTCAACAGCAACAGTCACCGTCGGCAGCGACTAACCAGCTTGTCTTCCTCAACTCTGCTGGGGCCAATCCACTCGGTCAGGGCTCCACTCTCCCCCACGCGCCGCCCTCCCATACCCAGCAATTTGTCGGCATACCGCTCCCGACCGTGTCCTCTCAGGACCCCAGTAACTCGCAGTCCATGCATCCCCACCACGACATGGCTGCTCTCCACGCCTTCATGCCTCGCATTCAGACTCAGTACGCGCTCTGGAACTCAATCGACCCTTCCGCGCGTGAAACCCCACGCGCCCAGCAGGGCCTGTCACTGAGTCTGTCGTCCCAGCAGCCCGGGTTCGGGTCCTTCCGTGGCGCTGATCGGGAAGTCCCGACTGGTGAGGATATTCGGGTTTCGAGCGGGTCCAACTCTTCGGCTTCGGGTGTGACTAATGGAGTTTCGGGTATGCAGAGCGTGTTGCTGAGCTCCAAGTACTTGAAGGCTGCACAGGAGCTTCTTGATGAGGTTGTGAACGTTGGAAATGGGATGAGGTCTGACTTGCCTAAGAAGGGTAATGGGAACCAGGGTAAGGCCATGGCCGAGTCTTCTATGGCGGCCGCCGGAGATGGTTCGATCGGCGGTGATCAAGATAGTGGGAAGCGTGCTGTAGAGCTAAGCACTGCAGAGAGGCAGGAAGTTCAGATGAAGAAGGGAAAGCTCATCAGCATGCTTGATGAGGTGGATCAAAGGTACAGACAGTACCATCGCCAGATGCAAATGGTAATTTCGTCGTTCGAGCAAGCATCCGGGATTGGTTCAGCAAGAACATACACTGCTCTTGCACTTCAAACAATCTCAAAGCAGTTCAGGTGCTTGAAAGATGCAATAACAAACCAAATTCGAGCCGCCAACAAGAGCTTAGGCGAAGAGGATTGCAGTGGTGGGAAGATTGAAGGTTCAAGGCTCAAATATGTTGACCACCAGCTCAGGCAGCAAAGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAAAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTTTTCGAACATTTTCTGCACCCCTATCCAAAGGATTCAGACAAGCATATGCTTGCAAAACAAACAGGGCTTACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGTCTGTGGAAGCCAATGGTGGAAGAAATGTACTTGGAGGAAATCAAGGAGAATGAGCTCAATGGATCATCTGAGAAGATGAGCAAGAGCAATGAGGATTCTGCATCAAAGTCCACACCTCCACAAGAGAGAAGTCCTGCTACTGATCAGAACCAAACCAATAGCACTTTCAATTCCAAACAAGAGCCTTCCACAAATCATATTGCTGCTCCTCCATCAATGTCAATGTCAATGTCCTCAGCTTCAACATCTCCCACAAACATTGTTCGGAACCAGTCCGGATTCAGCCTCATCGGGTCATCAGAATTGGATGGCATCACACAAGGTAGTCCAAAGAAGCCAAGGAGCACCGAATTAATGCATTCCCCAAGTAGTATGATGAACCATATGGATGTCAAGCCTCAAGAGGTGAGCAATGAGCAAGTTTCTATGAAATTTGGGGATGAGAGGCAGAGCAGAGATGGCTACTCATTCATGGGAGGACAGACCAATTTTATTGGGAATTTCGGGCAATACCCAATTGGTGAAATTGGGAGGTTCGATGCAGACCAATTCACACCACGGTTCTCAGGCAATGGTGTCTCTCTCACTCTTGGTCTTCCTCATTGTGAAAACCTCTCCTTGTCTGGTGCCCATCACCAAACTTTTCTCCCAAACCAAAACATTCAATTGGGGAGAAGAGTTGATCACATTGGAGAACCAAATGATCAGTTTGGTACCATGAACACTTCAGCTCCTCACTCTTCTGCCGGATTCGAAAGCATCGACATTCAGAATCGAAAGAGGTTCGTAGCACAATTGTTGCCAGACTTTGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

701

Amino Acids

76.72

Weight (kDa)

6.75

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	186 - 324	1.5e-49	Associated with HOX
Homeobox_KN	PF05920	390 - 429	1.9e-19	Homeobox KN domain
Homeodomain	PF00046	397 - 429	1.2e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008108)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900 FvH4_1g25900
rosa_chinensis	RchiOBHm_Chr3g0485041
rosa_laevigata	RLG00000023173
rosa_multiflora	Rmu_sc0006040.1_g000014
rosa_roxburghii	Rroxscaffold_6G00397230
rosa_rugosa	Rorug03G0215400 Rorug03G0215500 Rorug03G0215600 Rorug03G0215600 Rorug03G0215600
rosa_samantha	Rh3AG265800 Rh3BG301400 Rh3CG299700 Rh3DG295500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1271
Acc65I	GGTACC	1 cut(s)	2000
AccB1I	GGYRCC	2 cut(s)	1913, 2000
AccB7I	CCANNNNNTGG	2 cut(s)	304, 1093
AccBSI	CCGCTC	2 cut(s)	244, 501
AccII	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
AccIII	TCCGGA	1 cut(s)	1562
AciI	CCGC	9 cut(s)	48, 209, 242, 375, 501, 695, 699, 720, 987
AclI	AACGTT	1 cut(s)	615
AclWI	GGATC	3 cut(s)	831, 1096, 1357
AcoI	YGGCCR	2 cut(s)	678, 696
AcsI	RAATTY	3 cut(s)	978, 1718, 1786
AcuI	CTGAAG	1 cut(s)	1998
AfaI	GTAC	8 cut(s)	11, 95, 347, 575, 833, 842, 1316, 2002
AgsI	TTSAA	9 cut(s)	580, 929, 958, 1034, 1041, 1260, 1456, 1530, 1952
AjnI	CCWGG	2 cut(s)	663, 1251
AjuI	GAANNNNNNNTTGG	2 cut(s)	1436, 1468
Alw21I	GWGCWC	4 cut(s)	569, 1084, 1344, 1634
Alw26I	GTCTC	2 cut(s)	1114, 1870
AlwI	GGATC	3 cut(s)	831, 1096, 1357
AlwNI	CAGNNNCTG	2 cut(s)	61, 406
Ama87I	CYCGRG	2 cut(s)	434, 1278
Aor13HI	TCCGGA	1 cut(s)	1562
AoxI	GGCC	6 cut(s)	168, 403, 672, 678, 696, 2100
ApeKI	GCWGC	6 cut(s)	131, 308, 430, 584, 1072, 1490
ApoI	RAATTY	3 cut(s)	978, 1718, 1786
AseI	ATTAAT	1 cut(s)	1640
Asp700I	GAANNNNTTC	1 cut(s)	1182
Asp718I	GGTACC	1 cut(s)	2000
AspLEI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1166
AspS9I	GGNCC	5 cut(s)	168, 265, 403, 444, 504
AsuC2I	CCSGG	3 cut(s)	435, 436, 889
AsuHPI	GGTGA	6 cut(s)	114, 491, 734, 1705, 1820, 1913
AsuII	TTCGAA	2 cut(s)	1176, 2040
AvaI	CYCGRG	2 cut(s)	434, 1278
AvaII	GGWCC	3 cut(s)	265, 444, 504
BaeGI	GKGCMC	1 cut(s)	1918
BanI	GGYRCC	2 cut(s)	1913, 2000
BanII	GRGCYC	4 cut(s)	191, 569, 1084, 1344
BarI	GAAGNNNNNNTAC	2 cut(s)	1408, 1440
BbsI	GAAGAC	3 cut(s)	142, 678, 1874
Bbv12I	GWGCWC	4 cut(s)	569, 1084, 1344, 1634
BbvCI	CCTCAGC	1 cut(s)	1522
BbvI	GCAGC	6 cut(s)	143, 295, 442, 571, 1084, 1477
BccI	CCATC	6 cut(s)	701, 852, 1507, 1589, 1739, 1926
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	2 cut(s)	665, 1253
BciVI	GTATCC	1 cut(s)	94
BclI	TGATCA	4 cut(s)	724, 1429, 1969, 1990
BcnI	CCSGG	3 cut(s)	435, 436, 889
BcoDI	GTCTC	2 cut(s)	1114, 1870
BfaI	CTAG	1 cut(s)	1245
BfmI	CTRYAG	2 cut(s)	747, 762
BfoI	RGCGCY	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	1145
BlpI	GCTNAGC	2 cut(s)	563, 755
BmcAI	AGTACT	2 cut(s)	95, 575
Bme1390I	CCNGG	5 cut(s)	435, 436, 665, 889, 1253
Bme18I	GGWCC	3 cut(s)	265, 444, 504
BmeT110I	CYCGRG	2 cut(s)	434, 1278
BmgT120I	GGNCC	5 cut(s)	168, 265, 403, 444, 504
BmrFI	CCNGG	5 cut(s)	435, 436, 665, 889, 1253
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	8 cut(s)	298, 843, 893, 952, 1397, 1608, 1816, 2055
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	3 cut(s)	142, 678, 1874
Bpu10I	CCTNAGC	3 cut(s)	1000, 1067, 1522
Bpu1102I	GCTNAGC	2 cut(s)	563, 755
Bpu14I	TTCGAA	2 cut(s)	1176, 2040
BpuEI	CTTGAG	1 cut(s)	1671
BpuMI	CCSGG	3 cut(s)	435, 436, 889
BsaI	GGTCTC	1 cut(s)	1114
BsaJI	CCNNGG	7 cut(s)	76, 434, 451, 664, 675, 1625, 1844
BsaWI	WCCGGW	1 cut(s)	1562
BsaXI	ACNNNNNCTCC	2 cut(s)	2002, 2032
Bse1I	ACTGG	4 cut(s)	91, 270, 481, 1558
Bse3DI	GCAATG	3 cut(s)	1381, 1705, 1864
BseAI	TCCGGA	1 cut(s)	1562
BseBI	CCWGG	2 cut(s)	665, 1253
BseDI	CCNNGG	7 cut(s)	76, 434, 451, 664, 675, 1625, 1844
BseGI	GGATG	6 cut(s)	289, 633, 884, 1600, 1681, 1732
BseMI	GCAATG	3 cut(s)	1381, 1705, 1864
BseMII	CTCAG	8 cut(s)	275, 356, 404, 554, 1081, 1347, 1536, 1866
BseNI	ACTGG	4 cut(s)	91, 270, 481, 1558
BseRI	GAGGAG	2 cut(s)	1485, 2010
BseSI	GKGCMC	1 cut(s)	1918
BseX3I	CGGCCG	1 cut(s)	696
BseXI	GCAGC	6 cut(s)	143, 295, 442, 571, 1084, 1477
BseYI	CCCAGC	4 cut(s)	164, 222, 396, 426
BsgI	GTGCAG	2 cut(s)	570, 1172
Bsh1236I	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
Bsh1285I	CGRYCG	3 cut(s)	252, 699, 717
BshFI	GGCC	6 cut(s)	170, 405, 674, 680, 698, 2102
BshNI	GGYRCC	2 cut(s)	1913, 2000
BsiEI	CGRYCG	3 cut(s)	252, 699, 717
BsiHKAI	GWGCWC	4 cut(s)	569, 1084, 1344, 1634
BsiHKCI	CYCGRG	2 cut(s)	434, 1278
BsiSI	CCGG	5 cut(s)	435, 702, 888, 1563, 2034
BslFI	GGGAC	2 cut(s)	409, 455
BsmAI	GTCTC	2 cut(s)	1114, 1870
BsmFI	GGGAC	2 cut(s)	409, 455
BsmI	GAATGC	2 cut(s)	333, 1645
BsnI	GGCC	6 cut(s)	170, 405, 674, 680, 698, 2102
Bso31I	GGTCTC	1 cut(s)	1114
BsoBI	CYCGRG	2 cut(s)	434, 1278
Bsp119I	TTCGAA	2 cut(s)	1176, 2040
Bsp1286I	GDGCHC	6 cut(s)	191, 569, 1084, 1344, 1634, 1918
Bsp13I	TCCGGA	1 cut(s)	1562
Bsp1720I	GCTNAGC	2 cut(s)	563, 755
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	9 cut(s)	48, 209, 242, 375, 501, 695, 699, 720, 987
BspANI	GGCC	6 cut(s)	170, 405, 674, 680, 698, 2102
BspCNI	CTCAG	8 cut(s)	274, 355, 405, 555, 1080, 1348, 1535, 1865
BspEI	TCCGGA	1 cut(s)	1562
BspFNI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
BspHI	TCATGA	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	3 cut(s)	831, 1096, 1357
BspT104I	TTCGAA	2 cut(s)	1176, 2040
BspT107I	GGYRCC	2 cut(s)	1913, 2000
BspTNI	GGTCTC	1 cut(s)	1114
BsrBI	CCGCTC	2 cut(s)	244, 501
BsrDI	GCAATG	3 cut(s)	1381, 1705, 1864
BsrI	ACTGG	4 cut(s)	91, 270, 481, 1558
BssECI	CCNNGG	7 cut(s)	76, 434, 451, 664, 675, 1625, 1844
BssT1I	CCWWGG	2 cut(s)	675, 1625
Bst2UI	CCWGG	2 cut(s)	665, 1253
Bst4CI	ACNGT	7 cut(s)	80, 120, 126, 253, 840, 1092, 1848
Bst6I	CTCTTC	4 cut(s)	517, 1002, 1957, 2032
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstBI	TTCGAA	2 cut(s)	1176, 2040
BstC8I	GCNNGC	5 cut(s)	53, 744, 809, 882, 1224
BstDSI	CCRYGG	4 cut(s)	76, 451, 675, 1844
BstF5I	GGATG	6 cut(s)	289, 633, 884, 1600, 1681, 1732
BstFNI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1166
BstMAI	GTCTC	2 cut(s)	1114, 1870
BstMCI	CGRYCG	3 cut(s)	252, 699, 717
BstMWI	GCNNNNNNNGC	4 cut(s)	286, 317, 1072, 1746
BstNI	CCWGG	2 cut(s)	665, 1253
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	5 cut(s)	433, 434, 663, 887, 1251
BstSFI	CTRYAG	2 cut(s)	747, 762
BstSLI	GKGCMC	1 cut(s)	1918
BstUI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
BstV1I	GCAGC	6 cut(s)	143, 295, 442, 571, 1084, 1477
BstV2I	GAAGAC	3 cut(s)	142, 678, 1874
BstX2I	RGATCY	1 cut(s)	1145
BstYI	RGATCY	1 cut(s)	1145
BstZI	CGGCCG	1 cut(s)	696
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	6 cut(s)	170, 405, 674, 680, 698, 2102
BtgI	CCRYGG	4 cut(s)	76, 451, 675, 1844
BtgZI	GCGATG	1 cut(s)	830
BtsCI	GGATG	6 cut(s)	289, 633, 884, 1600, 1681, 1732
BtsI	GCAGTG	3 cut(s)	759, 912, 1024
BtsIMutI	CAGTG	4 cut(s)	410, 759, 912, 1024
Cac8I	GCNNGC	5 cut(s)	53, 744, 809, 882, 1224
CaiI	CAGNNNCTG	2 cut(s)	61, 406
CciI	TCATGA	1 cut(s)	69
CciNI	GCGGCCGC	1 cut(s)	696
CfoI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1166
Cfr13I	GGNCC	5 cut(s)	168, 265, 403, 444, 504
Cfr9I	CCCGGG	1 cut(s)	434
Csp6I	GTAC	8 cut(s)	10, 94, 346, 574, 832, 841, 1315, 2001
CspCI	CAANNNNNGTGG	2 cut(s)	1528, 1563
CviAII	CATG	9 cut(s)	17, 70, 286, 304, 325, 676, 808, 1759, 2005
CviQI	GTAC	8 cut(s)	10, 94, 346, 574, 832, 841, 1315, 2001
EaeI	YGGCCR	2 cut(s)	678, 696
EagI	CGGCCG	1 cut(s)	696
Eam1104I	CTCTTC	4 cut(s)	517, 1002, 1957, 2032
EarI	CTCTTC	4 cut(s)	517, 1002, 1957, 2032
Ecl136II	GAGCTC	3 cut(s)	567, 1082, 1342
EclXI	CGGCCG	1 cut(s)	696
Eco130I	CCWWGG	2 cut(s)	675, 1625
Eco24I	GRGCYC	4 cut(s)	191, 569, 1084, 1344
Eco31I	GGTCTC	1 cut(s)	1114
Eco47I	GGWCC	3 cut(s)	265, 444, 504
Eco52I	CGGCCG	1 cut(s)	696
Eco53kI	GAGCTC	3 cut(s)	567, 1082, 1342
Eco57I	CTGAAG	1 cut(s)	1998
Eco88I	CYCGRG	2 cut(s)	434, 1278
EcoICRI	GAGCTC	3 cut(s)	567, 1082, 1342
EcoO109I	RGGNCCY	3 cut(s)	265, 403, 444
EcoRII	CCWGG	2 cut(s)	663, 1251
EcoT14I	CCWWGG	2 cut(s)	675, 1625
EcoT22I	ATGCAT	2 cut(s)	291, 1647
EcoT38I	GRGCYC	4 cut(s)	191, 569, 1084, 1344
ErhI	CCWWGG	2 cut(s)	675, 1625
FaeI	CATG	9 cut(s)	20, 73, 289, 307, 328, 679, 811, 1762, 2008
FaqI	GGGAC	2 cut(s)	409, 455
FatI	CATG	9 cut(s)	16, 69, 285, 303, 324, 675, 807, 1758, 2004
FauI	CCCGC	1 cut(s)	494
FauNDI	CATATG	2 cut(s)	1218, 1671
FbaI	TGATCA	4 cut(s)	724, 1429, 1969, 1990
FokI	GGATG	6 cut(s)	276, 640, 871, 1607, 1688, 1739
FriOI	GRGCYC	4 cut(s)	191, 569, 1084, 1344
FspBI	CTAG	1 cut(s)	1245
GlaI	GCGC	6 cut(s)	207, 351, 378, 394, 457, 1165
GsaI	CCCAGC	4 cut(s)	168, 226, 400, 430
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	6 cut(s)	170, 405, 674, 680, 698, 2102
HapII	CCGG	5 cut(s)	435, 702, 888, 1563, 2034
HhaI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1166
Hin1II	CATG	9 cut(s)	20, 73, 289, 307, 328, 679, 811, 1762, 2008
Hin6I	GCGC	6 cut(s)	206, 350, 377, 393, 456, 1164
HinP1I	GCGC	6 cut(s)	206, 350, 377, 393, 456, 1164
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HinfI	GANTC	9 cut(s)	58, 340, 415, 683, 1205, 1382, 1566, 2037, 2059
HpaII	CCGG	5 cut(s)	435, 702, 888, 1563, 2034
HphI	GGTGA	6 cut(s)	114, 491, 734, 1705, 1820, 1913
Hpy166II	GTNNAC	3 cut(s)	613, 1057, 1398
Hpy8I	GTNNAC	3 cut(s)	613, 1057, 1398
Hpy99I	CGWCG	4 cut(s)	10, 47, 130, 874
HpyAV	CCTTC	8 cut(s)	331, 381, 457, 574, 643, 784, 1028, 1482
HpyCH4III	ACNGT	7 cut(s)	80, 120, 126, 253, 840, 1092, 1848
HpyCH4IV	ACGT	3 cut(s)	8, 87, 615
HpyF10VI	GCNNNNNNNGC	4 cut(s)	286, 317, 1072, 1746
HpySE526I	ACGT	3 cut(s)	8, 87, 615
Hsp92II	CATG	9 cut(s)	20, 73, 289, 307, 328, 679, 811, 1762, 2008
HspAI	GCGC	6 cut(s)	206, 350, 377, 393, 456, 1164
Kpn2I	TCCGGA	1 cut(s)	1562
KpnI	GGTACC	1 cut(s)	2004
Ksp22I	TGATCA	4 cut(s)	724, 1429, 1969, 1990
LmnI	GCTCC	8 cut(s)	194, 249, 572, 592, 1248, 1498, 1629, 2023
Lsp1109I	GCAGC	6 cut(s)	143, 295, 442, 571, 1084, 1477
LweI	GCATC	8 cut(s)	298, 843, 893, 952, 1397, 1608, 1816, 2055
MaeI	CTAG	1 cut(s)	1245
MaeII	ACGT	3 cut(s)	8, 87, 615
MaeIII	GTNAC	6 cut(s)	20, 83, 120, 272, 408, 526
MbiI	CCGCTC	2 cut(s)	244, 501
MfeI	CAATTG	3 cut(s)	1803, 1952, 2081
MflI	RGATCY	1 cut(s)	1145
MhlI	GDGCHC	6 cut(s)	191, 569, 1084, 1344, 1634, 1918
MlyI	GAGTC	4 cut(s)	52, 334, 424, 692
MmeI	TCCRAC	4 cut(s)	58, 531, 598, 1111
Mph1103I	ATGCAT	2 cut(s)	291, 1647
MroI	TCCGGA	1 cut(s)	1562
MroXI	GAANNNNTTC	1 cut(s)	1182
MseI	TTAA	1 cut(s)	1640
MslI	CAYNNNNRTG	2 cut(s)	806, 1674
MspI	CCGG	5 cut(s)	435, 702, 888, 1563, 2034
MspR9I	CCNGG	5 cut(s)	435, 436, 665, 889, 1253
MunI	CAATTG	3 cut(s)	1803, 1952, 2081
Mva1269I	GAATGC	2 cut(s)	333, 1645
MvaI	CCWGG	2 cut(s)	665, 1253
MvnI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
MwoI	GCNNNNNNNGC	4 cut(s)	286, 317, 1072, 1746
NciI	CCSGG	3 cut(s)	435, 436, 889
NcoI	CCATGG	1 cut(s)	675
NdeI	CATATG	2 cut(s)	1218, 1671
NlaIII	CATG	9 cut(s)	20, 73, 289, 307, 328, 679, 811, 1762, 2008
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	3 cut(s)	120, 408, 526
NotI	GCGGCCGC	1 cut(s)	696
NsiI	ATGCAT	2 cut(s)	291, 1647
NspI	RCATGY	1 cut(s)	811
NspV	TTCGAA	2 cut(s)	1176, 2040
PaeI	GCATGC	1 cut(s)	811
PaeR7I	CTCGAG	1 cut(s)	1278
PagI	TCATGA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 2046
PctI	GAATGC	2 cut(s)	333, 1645
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	5 cut(s)	1205, 1382, 1566, 2037, 2059
PflFI	GACNNNGTC	1 cut(s)	253
PflMI	CCANNNNNTGG	2 cut(s)	304, 1093
PfoI	TCCNGGA	1 cut(s)	887
Ple19I	CGATCG	1 cut(s)	717
PleI	GAGTC	4 cut(s)	52, 334, 423, 691
PpsI	GAGTC	4 cut(s)	52, 334, 423, 691
PpuMI	RGGWCCY	2 cut(s)	265, 444
PshBI	ATTAAT	1 cut(s)	1640
PsiI	TTATAA	1 cut(s)	1271
Psp124BI	GAGCTC	3 cut(s)	569, 1084, 1344
Psp1406I	AACGTT	1 cut(s)	615
Psp5II	RGGWCCY	2 cut(s)	265, 444
Psp6I	CCWGG	2 cut(s)	663, 1251
PspFI	CCCAGC	4 cut(s)	164, 222, 396, 426
PspGI	CCWGG	2 cut(s)	663, 1251
PspPI	GGNCC	5 cut(s)	168, 265, 403, 444, 504
PspPPI	RGGWCCY	2 cut(s)	265, 444
PspXI	VCTCGAGB	1 cut(s)	1278
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	2 cut(s)	61, 406
PsuI	RGATCY	1 cut(s)	1145
PsyI	GACNNNGTC	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	717
RsaI	GTAC	8 cut(s)	11, 95, 347, 575, 833, 842, 1316, 2002
RsaNI	GTAC	8 cut(s)	10, 94, 346, 574, 832, 841, 1315, 2001
RseI	CAYNNNNRTG	2 cut(s)	806, 1674
SacI	GAGCTC	3 cut(s)	569, 1084, 1344
SaqAI	TTAA	1 cut(s)	1640
Sau96I	GGNCC	5 cut(s)	168, 265, 403, 444, 504
ScaI	AGTACT	2 cut(s)	95, 575
SchI	GAGTC	4 cut(s)	52, 334, 424, 692
ScrFI	CCNGG	5 cut(s)	435, 436, 665, 889, 1253
SduI	GDGCHC	6 cut(s)	191, 569, 1084, 1344, 1634, 1918
SfaNI	GCATC	8 cut(s)	298, 843, 893, 952, 1397, 1608, 1816, 2055
SfcI	CTRYAG	2 cut(s)	747, 762
Sfr274I	CTCGAG	1 cut(s)	1278
SfuI	TTCGAA	2 cut(s)	1176, 2040
SinI	GGWCC	3 cut(s)	265, 444, 504
SlaI	CTCGAG	1 cut(s)	1278
SmaI	CCCGGG	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	806, 1674
SmlI	CTYRAG	2 cut(s)	1278, 1686
SmoI	CTYRAG	2 cut(s)	1278, 1686
SphI	GCATGC	1 cut(s)	811
SsiI	CCGC	9 cut(s)	48, 209, 242, 375, 501, 695, 699, 720, 987
SspMI	CTAG	1 cut(s)	1245
SstI	GAGCTC	3 cut(s)	569, 1084, 1344
StyD4I	CCNGG	5 cut(s)	433, 434, 663, 887, 1251
StyI	CCWWGG	2 cut(s)	675, 1625
TaaI	ACNGT	7 cut(s)	80, 120, 126, 253, 840, 1092, 1848
TaiI	ACGT	3 cut(s)	11, 90, 618
TaqII	GACCGA	1 cut(s)	170
TatI	WGTACW	3 cut(s)	93, 573, 1314
TauI	GCSGC	5 cut(s)	51, 211, 698, 701, 989
TfiI	GAWTC	5 cut(s)	1205, 1382, 1566, 2037, 2059
Tru1I	TTAA	1 cut(s)	1640
Tru9I	TTAA	1 cut(s)	1640
TscAI	CASTG	4 cut(s)	417, 766, 919, 1024
TseFI	GTSAC	3 cut(s)	120, 408, 526
TseI	GCWGC	6 cut(s)	131, 308, 430, 584, 1072, 1490
Tsp45I	GTSAC	3 cut(s)	120, 408, 526
TspDTI	ATGAA	8 cut(s)	5, 86, 313, 800, 1679, 1730, 1747, 2021
TspGWI	ACGGA	1 cut(s)	440
TspMI	CCCGGG	1 cut(s)	434
TspRI	CASTG	4 cut(s)	417, 766, 919, 1024
Tth111I	GACNNNGTC	1 cut(s)	253
Van91I	CCANNNNNTGG	2 cut(s)	304, 1093
VpaK11BI	GGWCC	3 cut(s)	265, 444, 504
VspI	ATTAAT	1 cut(s)	1640
XapI	RAATTY	3 cut(s)	978, 1718, 1786
XceI	RCATGY	1 cut(s)	811
XhoI	CTCGAG	1 cut(s)	1278
XmaI	CCCGGG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	1 cut(s)	1245
ZrmI	AGTACT	2 cut(s)	95, 575
Zsp2I	ATGCAT	2 cut(s)	291, 1647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.