FvH4_1g25940

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009364
Physical Location & Seq
Forward (+)
17826902 .. 17828644
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25940.t1

Sequence Viewer

Length: 345 bp
ATGGTTGTTCCTCCCCCGGTCAGGCCTCCTACTATCACAAAGTTTTTAAAGCCTTATGTGCTAAAAATGCACTTTACAAATAAATATGTAAGTGCCCAGGTAGTCCACTCACCAACTGCTACTGTAGCCTCTTCTGCAAGCTCACAAGAAAAGGCTTTGAGAGAGAGCCTGGAATCACATCGGGATGTTGCTGCTGCTGCGAAGATTGGGAAGATATTAGGGGAGCGCCTGCTGCTCAAGAATATCCCTGCTGTATCAGTCCACTTAAAGAGAGAACAGAAATATCATGGTAAGGTTAAAGCTGTCATTGATAATGTGGTAGAAGCAGGTGTCAAACTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

115

Amino Acids

12.47

Weight (kDa)

10.1

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 20 - 113 2.5e-13 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 21
AjnI CCWGG 2 cut(s) 96, 168
AluBI AGCT 2 cut(s) 141, 302
AluI AGCT 2 cut(s) 141, 302
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 4 cut(s) 191, 194, 197, 232
AspLEI GCGC 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 97
BbvI GCAGC 4 cut(s) 178, 181, 184, 219
BciT130I CCWGG 2 cut(s) 98, 170
BcnI CCSGG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 4 cut(s) 192, 195, 198, 233
BlsI GCNGC 4 cut(s) 193, 196, 199, 234
Bme1390I CCNGG 3 cut(s) 17, 98, 170
BmrFI CCNGG 3 cut(s) 17, 98, 170
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 15, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseBI CCWGG 2 cut(s) 98, 170
BseDI CCNNGG 2 cut(s) 15, 96
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 4 cut(s) 178, 181, 184, 219
BshFI GGCC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 97
BspANI GGCC 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 15, 96
Bst2UI CCWGG 2 cut(s) 98, 170
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 139, 230
BstF5I GGATG 1 cut(s) 190
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstMWI GCNNNNNNNGC 6 cut(s) 58, 67, 125, 134, 197, 232
BstNI CCWGG 2 cut(s) 98, 170
BstSCI CCNGG 3 cut(s) 15, 96, 168
BstSFI CTRYAG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 4 cut(s) 178, 181, 184, 219
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 190
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 139, 230
CfoI GCGC 1 cut(s) 228
CviAII CATG 1 cut(s) 287
CviJI RGCY 7 cut(s) 25, 52, 128, 141, 155, 168, 302
CviKI_1 RGCY 7 cut(s) 25, 52, 128, 141, 155, 168, 302
DraI TTTAAA 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 96, 168
FaeI CATG 1 cut(s) 290
FaiI YATR 3 cut(s) 57, 87, 288
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 192, 195, 198, 233
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 4 cut(s) 192, 195, 198, 233
GlaI GCGC 1 cut(s) 227
GluI GCNGC 4 cut(s) 192, 195, 198, 233
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 1 cut(s) 173
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 2 cut(s) 106, 262
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 2 cut(s) 182, 238
Hpy8I GTNNAC 2 cut(s) 106, 262
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 70, 137
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 67, 125, 134, 197, 232
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 9 cut(s) 7, 30, 83, 110, 155, 182, 242, 261, 312
Lsp1109I GCAGC 4 cut(s) 178, 181, 184, 219
MboII GAAGA 3 cut(s) 123, 214, 223
MhlI GDGCHC 1 cut(s) 97
MnlI CCTC 3 cut(s) 21, 36, 139
MseI TTAA 3 cut(s) 47, 266, 297
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 3 cut(s) 17, 98, 170
MvaI CCWGG 2 cut(s) 98, 170
MwoI GCNNNNNNNGC 6 cut(s) 58, 67, 125, 134, 197, 232
NciI CCSGG 1 cut(s) 17
NlaIII CATG 1 cut(s) 290
PaqCI CACCTGC 1 cut(s) 317
PceI AGGCCT 1 cut(s) 25
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 4 cut(s) 193, 196, 199, 234
Psp6I CCWGG 2 cut(s) 96, 168
PspGI CCWGG 2 cut(s) 96, 168
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 3 cut(s) 47, 266, 297
SatI GCNGC 4 cut(s) 192, 195, 198, 233
ScrFI CCNGG 3 cut(s) 17, 98, 170
SduI GDGCHC 1 cut(s) 97
SetI ASST 5 cut(s) 102, 143, 297, 304, 331
SfcI CTRYAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SseBI AGGCCT 1 cut(s) 25
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 3 cut(s) 15, 96, 168
TaaI ACNGT 1 cut(s) 124
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 3 cut(s) 47, 266, 297
Tru9I TTAA 3 cut(s) 47, 266, 297
TseI GCWGC 4 cut(s) 191, 194, 197, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.