Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009364

Physical Location & Seq

Genomic Coordinates Reverse (-)

28327209 .. 28328656

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G319700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGCATTCCTCCGGTCAGGGCACCACGTATTACAAAGTATCTAAAGCCTTATGTTCTGAAAATGCACTTTACAAACAAATACGTAACTGCACAAGTAATCCACACACCAACGGCCACAGTAGCTTCTTCTGCAAGCTCCCAGGAAAAGGCCTTGAGAGAAAGCATGGAGATACGCCGGGACGTTGCTGCTGCTGGAAAGATAGGGAAGATATTGGGGGAGCGCCTCCTGCTCAAGAACATCCCTGCTGTATGCGTCCAGTTGAAGAGAGAACAGAAATATCATGGTAAGGTTAAAGCTGTCGTTGACAGTGTGGTGGAAGCAGGTGTCAAACTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

114

Amino Acids

12.45

Weight (kDa)

10.15

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27820
fragaria_vesca	FvH4_1g25940
malus_domestica	MD04G1198900.v1.1 MD12G1212100.v1.1
prunus_persica	Prupe.2G141100_v2.0.a1 Prupe.6G319700_v2.0.a1
pyrus_communis	pycom04g17580 pycom12g19840
rosa_chinensis	RchiOBHm_Chr6g0270961
rosa_laevigata	RLG00000025332
rosa_multiflora	Rmu_sc0020335.1_g000005 Rmu_sc0023945.1_g000002
rosa_roxburghii	Rroxscaffold_7G00197480
rosa_rugosa	Rorug03G0011200 Rorug06G0057400
rosa_samantha	Rh3DG072800 Rh6AG177000 Rh6CG176400 Rh6DG168600
rosa_wichuraiana	Rw3G005630 Rw3G005980 Rw6G015090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	3 cut(s)	125, 138, 299
AluI	AGCT	3 cut(s)	125, 138, 299
AoxI	GGCC	2 cut(s)	114, 150
ApeKI	GCWGC	2 cut(s)	188, 191
AspLEI	GCGC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	175, 178
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	2 cut(s)	189, 192
BlsI	GCNGC	2 cut(s)	190, 193
Bme1390I	CCNGG	2 cut(s)	143, 179
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	143, 179
BpuEI	CTTGAG	2 cut(s)	175, 218
BpuMI	CCSGG	1 cut(s)	179
BsaAI	YACGTR	2 cut(s)	29, 85
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	175, 178
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	116, 152
BshNI	GGYRCC	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	14, 178
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	6
BsnI	GGCC	2 cut(s)	116, 152
Bsp1286I	GDGCHC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	116, 152
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	121, 311
Bst6I	CTCTTC	1 cut(s)	260
BstBAI	YACGTR	2 cut(s)	29, 85
BstC8I	GCNNGC	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 229
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	141, 177
BstSLI	GKGCMC	1 cut(s)	25
BstSNI	TACGTA	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	175, 178
BsuRI	GGCC	2 cut(s)	116, 152
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	225
CseI	GACGC	1 cut(s)	244
CviAII	CATG	2 cut(s)	166, 284
CviJI	RGCY	6 cut(s)	49, 116, 125, 138, 152, 299
CviKI_1	RGCY	6 cut(s)	49, 116, 125, 138, 152, 299
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco105I	TACGTA	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	169, 287
FaiI	YATR	4 cut(s)	54, 167, 253, 285
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	165, 283
Fnu4HI	GCNGC	2 cut(s)	189, 192
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	189, 192
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	2 cut(s)	189, 192
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	116, 152
HapII	CCGG	2 cut(s)	14, 178
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	169, 287
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HpaII	CCGG	2 cut(s)	14, 178
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	60, 341
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	121, 311
HpyCH4IV	ACGT	3 cut(s)	28, 84, 183
HpyCH4V	TGCA	3 cut(s)	67, 92, 134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 229
HpySE526I	ACGT	3 cut(s)	28, 84, 183
Hsp92II	CATG	2 cut(s)	169, 287
HspAI	GCGC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	143, 220
Lsp1109I	GCAGC	2 cut(s)	175, 178
MaeII	ACGT	3 cut(s)	28, 84, 183
MaeIII	GTNAC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	120, 220, 277
MhlI	GDGCHC	1 cut(s)	25
MnlI	CCTC	2 cut(s)	21, 236
MseI	TTAA	1 cut(s)	294
MspI	CCGG	2 cut(s)	14, 178
MspR9I	CCNGG	2 cut(s)	143, 179
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 229
NciI	CCSGG	1 cut(s)	179
NlaIII	CATG	2 cut(s)	169, 287
NlaIV	GGNNCC	1 cut(s)	24
PaqCI	CACCTGC	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	152
PctI	GAATGC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	190, 193
Ppu21I	YACGTR	2 cut(s)	29, 85
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	189, 192
ScrFI	CCNGG	2 cut(s)	143, 179
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	8 cut(s)	31, 87, 127, 140, 186, 294, 301, 328
SmlI	CTYRAG	2 cut(s)	154, 233
SmoI	CTYRAG	2 cut(s)	154, 233
SnaBI	TACGTA	1 cut(s)	85
SseBI	AGGCCT	1 cut(s)	152
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	141, 177
TaaI	ACNGT	2 cut(s)	121, 311
TaiI	ACGT	3 cut(s)	31, 87, 186
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	2 cut(s)	188, 191
TspRI	CASTG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.