Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023945.1

Orthogroup ID

OG0009364

Physical Location & Seq

Genomic Coordinates Forward (+)

4118 .. 4462

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023945.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggttgttcctcctccaatcaggccacctactgttacgaagtttctaaagccttatgtcctgaaaatgcactttacaaataaatttgtaactgcacaggtcatccactcgccaactgccactgtagcctcttccgcaagctctcaggaaaaggccttgagagaaagcttggaatcgcatcgggatgttgctgctgctgcaaagattgggaagatattaggtgagcgcctgctgctcaagaacatccctgcggtcgcagtccacttgaagagagaacagaaatatcatggtaaggttaaagctgtcatagataatgtggtggaagcaggtgttaagctactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

114

Amino Acids

12.47

Weight (kDa)

10.17

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27820
fragaria_vesca	FvH4_1g25940
malus_domestica	MD04G1198900.v1.1 MD12G1212100.v1.1
prunus_persica	Prupe.2G141100_v2.0.a1 Prupe.6G319700_v2.0.a1
pyrus_communis	pycom04g17580 pycom12g19840
rosa_chinensis	RchiOBHm_Chr6g0270961
rosa_laevigata	RLG00000025332
rosa_multiflora	Rmu_sc0020335.1_g000005 Rmu_sc0023945.1_g000002
rosa_roxburghii	Rroxscaffold_7G00197480
rosa_rugosa	Rorug03G0011200 Rorug06G0057400
rosa_samantha	Rh3DG072800 Rh6AG177000 Rh6CG176400 Rh6DG168600
rosa_wichuraiana	Rw3G005630 Rw3G005980 Rw6G015090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	317
AciI	CCGC	2 cut(s)	135, 251
AcsI	RAATTY	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	268
AluBI	AGCT	4 cut(s)	141, 168, 302, 337
AluI	AGCT	4 cut(s)	141, 168, 302, 337
AoxI	GGCC	2 cut(s)	23, 153
ApeKI	GCWGC	4 cut(s)	191, 194, 197, 232
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	233
BbvI	GCAGC	4 cut(s)	178, 181, 184, 219
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	4 cut(s)	192, 195, 198, 233
BlsI	GCNGC	4 cut(s)	193, 196, 199, 234
BmsI	GCATC	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	178, 221
BseGI	GGATG	3 cut(s)	102, 190, 243
BseMII	CTCAG	1 cut(s)	158
BseXI	GCAGC	4 cut(s)	178, 181, 184, 219
BsgI	GTGCAG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	25, 155
BsiEI	CGRYCG	1 cut(s)	255
BsnI	GGCC	2 cut(s)	25, 155
BspACI	CCGC	2 cut(s)	135, 251
BspANI	GGCC	2 cut(s)	25, 155
BspCNI	CTCAG	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	34, 124
Bst6I	CTCTTC	2 cut(s)	136, 263
BstC8I	GCNNGC	2 cut(s)	139, 230
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	102, 190, 243
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 134, 197, 232
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	178, 181, 184, 219
BsuRI	GGCC	2 cut(s)	25, 155
BtsCI	GGATG	3 cut(s)	102, 190, 243
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	139, 230
CfoI	GCGC	1 cut(s)	228
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	8 cut(s)	25, 52, 128, 141, 155, 168, 302, 337
CviKI_1	RGCY	8 cut(s)	25, 52, 128, 141, 155, 168, 302, 337
DdeI	CTNAG	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	136, 263
EarI	CTCTTC	2 cut(s)	136, 263
Eco147I	AGGCCT	1 cut(s)	155
FaeI	CATG	1 cut(s)	290
FaiI	YATR	3 cut(s)	57, 288, 308
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	4 cut(s)	192, 195, 198, 233
FokI	GGATG	3 cut(s)	89, 197, 230
Fsp4HI	GCNGC	4 cut(s)	192, 195, 198, 233
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	4 cut(s)	192, 195, 198, 233
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	25, 155
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	1 cut(s)	173
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188III	TCNNGA	4 cut(s)	61, 146, 182, 238
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	34, 124
HpyCH4V	TGCA	3 cut(s)	70, 95, 200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 134, 197, 232
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	7, 74, 83, 131, 242, 261, 312
Lsp1109I	GCAGC	4 cut(s)	178, 181, 184, 219
LweI	GCATC	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	34, 88
MboII	GAAGA	3 cut(s)	123, 223, 280
MluCI	AATT	1 cut(s)	83
MnlI	CCTC	3 cut(s)	21, 24, 139
MseI	TTAA	2 cut(s)	297, 333
MslI	CAYNNNNRTG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	125, 134, 197, 232
NlaIII	CATG	1 cut(s)	290
PaqCI	CACCTGC	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	193, 196, 199, 234
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	297, 333
SatI	GCNGC	4 cut(s)	192, 195, 198, 233
SetI	ASST	9 cut(s)	31, 102, 143, 170, 223, 297, 304, 331, 339
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	2 cut(s)	157, 236
SmoI	CTYRAG	2 cut(s)	157, 236
Sse9I	AATT	1 cut(s)	83
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	2 cut(s)	135, 251
StuI	AGGCCT	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	34, 124
TasI	AATT	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	297, 333
Tru9I	TTAA	2 cut(s)	297, 333
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	4 cut(s)	191, 194, 197, 232
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.