Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009364

Physical Location & Seq

Genomic Coordinates Forward (+)

19752035 .. 19753206

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGCATTCCTCCGGTGAGGCCACCGCGCATTATAAAGTATCTAAAGCCTTATGTTCTGAAAATGCACTTTACAAACAAATTCGTAACTGCCCAAGTAATCCACACACCAACTGCCACAGTAGCCTCTTCTGCAAGCTCCCAGGAAAAGGCCTTGAGAGAAAGCATGGAGATACGCCGCGACGTTGCTGCTGCTGCAAAGATAGGGAAGATATTAGGGGAGCGCCTCCTGCTCAAGAACATCCCTGCTGTATCCGTCCAGTTGAAGAAAGAACAGAAATATCATGGTAAGGTTAAAGCTGTCGTTGACAGTGTGGTGGAAGCCGGTGTCAAACTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

114

Amino Acids

12.44

Weight (kDa)

10.25

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27820
fragaria_vesca	FvH4_1g25940
malus_domestica	MD04G1198900.v1.1 MD12G1212100.v1.1
prunus_persica	Prupe.2G141100_v2.0.a1 Prupe.6G319700_v2.0.a1
pyrus_communis	pycom04g17580 pycom12g19840
rosa_chinensis	RchiOBHm_Chr6g0270961
rosa_laevigata	RLG00000025332
rosa_multiflora	Rmu_sc0020335.1_g000005 Rmu_sc0023945.1_g000002
rosa_roxburghii	Rroxscaffold_7G00197480
rosa_rugosa	Rorug03G0011200 Rorug06G0057400
rosa_samantha	Rh3DG072800 Rh6AG177000 Rh6CG176400 Rh6DG168600
rosa_wichuraiana	Rw3G005630 Rw3G005980 Rw6G015090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
AccII	CGCG	2 cut(s)	28, 180
AciI	CCGC	2 cut(s)	26, 178
AcsI	RAATTY	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	2 cut(s)	138, 299
AluI	AGCT	2 cut(s)	138, 299
AoxI	GGCC	2 cut(s)	20, 150
ApeKI	GCWGC	3 cut(s)	188, 191, 194
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	30, 225
AsuHPI	GGTGA	1 cut(s)	28
BbvI	GCAGC	3 cut(s)	175, 178, 181
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	262
BfoI	RGCGCY	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	4 cut(s)	178, 189, 192, 195
BlsI	GCNGC	4 cut(s)	179, 190, 193, 196
Bme1390I	CCNGG	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	175, 218
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	175, 178, 181
Bsh1236I	CGCG	2 cut(s)	28, 180
BshFI	GGCC	2 cut(s)	22, 152
BsiSI	CCGG	2 cut(s)	14, 324
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	6
BsnI	GGCC	2 cut(s)	22, 152
BspACI	CCGC	2 cut(s)	26, 178
BspANI	GGCC	2 cut(s)	22, 152
BspFNI	CGCG	2 cut(s)	28, 180
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	121, 311
Bst6I	CTCTTC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	2 cut(s)	28, 180
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	30, 225
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 131, 194, 229
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstUI	CGCG	2 cut(s)	28, 180
BstV1I	GCAGC	3 cut(s)	175, 178, 181
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	22, 152
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	2 cut(s)	30, 225
Cfr10I	RCCGGY	1 cut(s)	323
CviAII	CATG	2 cut(s)	166, 284
CviJI	RGCY	7 cut(s)	22, 49, 125, 138, 152, 299, 323
CviKI_1	RGCY	7 cut(s)	22, 49, 125, 138, 152, 299, 323
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	169, 287
FaiI	YATR	4 cut(s)	35, 54, 167, 285
FatI	CATG	2 cut(s)	165, 283
Fnu4HI	GCNGC	4 cut(s)	178, 189, 192, 195
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	178, 189, 192, 195
GlaI	GCGC	2 cut(s)	29, 224
GluI	GCNGC	4 cut(s)	178, 189, 192, 195
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	22, 152
HapII	CCGG	2 cut(s)	14, 324
HhaI	GCGC	2 cut(s)	30, 225
Hin1II	CATG	2 cut(s)	169, 287
Hin6I	GCGC	2 cut(s)	28, 223
HinP1I	GCGC	2 cut(s)	28, 223
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HpaII	CCGG	2 cut(s)	14, 324
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	60, 341
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	185
HpyCH4III	ACNGT	2 cut(s)	121, 311
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	67, 134, 197
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 131, 194, 229
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	169, 287
HspAI	GCGC	2 cut(s)	28, 223
LmnI	GCTCC	2 cut(s)	143, 220
LpnPI	CCDG	7 cut(s)	27, 128, 155, 242, 258, 272, 337
Lsp1109I	GCAGC	3 cut(s)	175, 178, 181
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	120, 220, 277
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	4 cut(s)	12, 21, 136, 236
MseI	TTAA	1 cut(s)	294
MspI	CCGG	2 cut(s)	14, 324
MspR9I	CCNGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	2 cut(s)	28, 180
MwoI	GCNNNNNNNGC	4 cut(s)	122, 131, 194, 229
NlaIII	CATG	2 cut(s)	169, 287
PceI	AGGCCT	1 cut(s)	152
PctI	GAATGC	1 cut(s)	6
PkrI	GCNGC	4 cut(s)	179, 190, 193, 196
PsiI	TTATAA	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	178, 189, 192, 195
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	4 cut(s)	140, 186, 294, 301
SmlI	CTYRAG	2 cut(s)	154, 233
SmoI	CTYRAG	2 cut(s)	154, 233
Sse9I	AATT	1 cut(s)	80
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	26, 178
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	121, 311
TaiI	ACGT	1 cut(s)	186
TasI	AATT	1 cut(s)	80
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	3 cut(s)	188, 191, 194
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.