Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008109

Physical Location & Seq

Genomic Coordinates Reverse (-)

18711023 .. 18714176

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26900.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTTCAATTGAGAATTTAGACCTTGAAAGTGGATGCCGTACTAGTCAAGAAGATGCAGGCTTGGAGCTTCTTTGGAGCAAGAGATCGGTAACCAAATTCTCGAGTAGTGATTTGGGTGTGTTTTTGAGTTCCAAGGAGTCAATTATGTGCAAATGTGGCAATCAATCATCTAGCAATTTGGATAAATATAGCCAAGTTAGGAGTGAAAGTGGGGAGGTGAAGGTAGAAATTAGTTCACAAGAGAATCGAGGGCAATTTAACCTTGCAGAGAAAGCATATGATAATGAGAGGCCCAGGAATACCAACTCTAGGAATGCTTTGAAGCCACCGCGACCTCCTAAAGGTCCATCACTCGATGCTGCTGATCAGAAGTTGGTTAGAGAGATTGTGGAGTTTGCTAGGAGAAAGCGTGCACGAATTGAACAGATTAAGGCAGCTAAGAAGACAAAAGCAACCAAGTCATCATCTGTGCAAAGTGGCATATCTGCCATGATCTTCACACTACTGTTCTTCTGTGTCATAATATTTCAAGGGATAAGCTCCACAACTGTTCCAAATATGAATACCCAGGGGTCTCCAGAGCCAGCAGTTGCAACAACTGGAGATTTAACTTTCCTTCATTACTCCCAAAGCACCATACCACGTTCTAGCTTTCAGAATTCTGTCAAATATCAGGTTTCTCGTTCAGGTCCGGCTGGAAAGGTGATCAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.27

Weight (kDa)

9.62

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900
malus_domestica	MD09G1285700.v1.1 MD17G1278300.v1.1
prunus_persica	Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1
pyrus_communis	pycom09g19290
rosa_chinensis	RchiOBHm_Chr3g0487151
rosa_laevigata	RLG00000023026
rosa_multiflora	Rmu_sc0003329.1_g000004 Rmu_sc0003843.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395100
rosa_rugosa	Rorug03G0231600 Rorug03G0231600 Rorug03G0231700
rosa_samantha	Rh3AG279700 Rh3BG315800 Rh3CG313900 Rh3DG311100
rosa_wichuraiana	Rw3G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AciI	CCGC	1 cut(s)	332
AcsI	RAATTY	3 cut(s)	16, 98, 661
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	312, 344
AgsI	TTSAA	5 cut(s)	9, 29, 325, 425, 533
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	2 cut(s)	296, 570
AluBI	AGCT	4 cut(s)	70, 440, 543, 654
AluI	AGCT	4 cut(s)	70, 440, 543, 654
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	582
Alw44I	GTGCAC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	293
ApaLI	GTGCAC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	362, 437
ApoI	RAATTY	3 cut(s)	16, 98, 661
AspS9I	GGNCC	3 cut(s)	294, 347, 692
AsuHPI	GGTGA	2 cut(s)	232, 718
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	347, 692
BaeGI	GKGCMC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	349, 449
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	298, 572
BclI	TGATCA	2 cut(s)	367, 708
BcoDI	GTCTC	1 cut(s)	582
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	5 cut(s)	45, 174, 312, 402, 651
BisI	GCNGC	2 cut(s)	363, 438
BlsI	GCNGC	2 cut(s)	364, 439
Bme1390I	CCNGG	2 cut(s)	298, 572
Bme18I	GGWCC	2 cut(s)	347, 692
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	294, 347, 692
BmrFI	CCNGG	2 cut(s)	298, 572
BmsI	GCATC	3 cut(s)	26, 46, 349
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	2 cut(s)	564, 624
BsaI	GGTCTC	1 cut(s)	582
BsaJI	CCNNGG	4 cut(s)	135, 296, 570, 571
BsaXI	ACNNNNNCTCC	4 cut(s)	196, 226, 397, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 344
Bse1I	ACTGG	1 cut(s)	607
BseBI	CCWGG	2 cut(s)	298, 572
BseDI	CCNNGG	4 cut(s)	135, 296, 570, 571
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	2 cut(s)	312, 344
BseNI	ACTGG	1 cut(s)	607
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	2 cut(s)	349, 449
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	695
BslI	CCNNNNNNNGG	2 cut(s)	312, 344
BsmAI	GTCTC	1 cut(s)	582
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	582
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	4 cut(s)	86, 367, 495, 708
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	4 cut(s)	135, 296, 570, 571
BssMI	GATC	4 cut(s)	86, 367, 495, 708
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	298, 572
Bst4CI	ACNGT	2 cut(s)	510, 553
BstC8I	GCNNGC	3 cut(s)	61, 414, 588
BstDEI	CTNAG	1 cut(s)	441
BstEII	GGTNACC	1 cut(s)	91
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	4 cut(s)	89, 370, 498, 711
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	4 cut(s)	86, 367, 495, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 275
BstNI	CCWGG	2 cut(s)	298, 572
BstPI	GGTNACC	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	296, 570
BstSLI	GKGCMC	1 cut(s)	418
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	349, 449
BstV2I	GAAGAC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	61, 414, 588
Cfr13I	GGNCC	3 cut(s)	294, 347, 692
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	1 cut(s)	493
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	4 cut(s)	88, 369, 497, 710
DpnII	GATC	4 cut(s)	86, 367, 495, 708
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	582
Eco47I	GGWCC	2 cut(s)	347, 692
Eco88I	CYCGRG	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO65I	GGTNACC	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	296, 570
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	1 cut(s)	496
FaiI	YATR	9 cut(s)	149, 192, 280, 282, 485, 494, 524, 563, 641
FatI	CATG	1 cut(s)	492
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	2 cut(s)	367, 708
Fnu4HI	GCNGC	2 cut(s)	363, 438
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	363, 438
FspBI	CTAG	5 cut(s)	45, 174, 312, 402, 651
GluI	GCNGC	2 cut(s)	363, 438
GsuI	CTGGAG	2 cut(s)	564, 624
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	695
Hin1II	CATG	1 cut(s)	496
HinfI	GANTC	2 cut(s)	140, 247
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	2 cut(s)	232, 718
Hpy166II	GTNNAC	2 cut(s)	239, 416
Hpy188I	TCNGA	2 cut(s)	372, 660
Hpy188III	TCNNGA	4 cut(s)	50, 103, 581, 712
Hpy8I	GTNNAC	2 cut(s)	239, 416
HpyAV	CCTTC	2 cut(s)	217, 629
HpyCH4III	ACNGT	2 cut(s)	510, 553
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	6 cut(s)	59, 153, 269, 416, 475, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 275
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	646
Hsp92II	CATG	1 cut(s)	496
Ksp22I	TGATCA	2 cut(s)	367, 708
Kzo9I	GATC	4 cut(s)	86, 367, 495, 708
LmnI	GCTCC	3 cut(s)	67, 78, 548
Lsp1109I	GCAGC	2 cut(s)	349, 449
LweI	GCATC	3 cut(s)	26, 46, 349
MaeI	CTAG	5 cut(s)	45, 174, 312, 402, 651
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	88, 369, 497, 710
MboI	GATC	4 cut(s)	86, 367, 495, 708
MboII	GAAGA	4 cut(s)	65, 457, 490, 505
MfeI	CAATTG	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	9 cut(s)	9, 16, 98, 144, 178, 231, 257, 420, 661
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	4 cut(s)	211, 245, 285, 348
MseI	TTAA	3 cut(s)	261, 432, 611
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	2 cut(s)	298, 572
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	298, 572
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	2 cut(s)	159, 275
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	4 cut(s)	86, 367, 495, 708
NlaIII	CATG	1 cut(s)	496
PaeR7I	CTCGAG	1 cut(s)	103
PasI	CCCWGGG	1 cut(s)	571
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	364, 439
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	296, 570
PspEI	GGTNACC	1 cut(s)	91
PspGI	CCWGG	2 cut(s)	296, 570
PspPI	GGNCC	3 cut(s)	294, 347, 692
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	261, 432, 611
SatI	GCNGC	2 cut(s)	363, 438
Sau3AI	GATC	4 cut(s)	86, 367, 495, 708
Sau96I	GGNCC	3 cut(s)	294, 347, 692
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	298, 572
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	3 cut(s)	26, 46, 349
Sfr274I	CTCGAG	1 cut(s)	103
SinI	GGWCC	2 cut(s)	347, 692
SlaI	CTCGAG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	9 cut(s)	9, 16, 98, 144, 178, 231, 257, 420, 661
SsiI	CCGC	1 cut(s)	332
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	5 cut(s)	45, 174, 312, 402, 651
StyD4I	CCNGG	2 cut(s)	296, 570
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	510, 553
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	3 cut(s)	104, 250, 357
TasI	AATT	9 cut(s)	9, 16, 98, 144, 178, 231, 257, 420, 661
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	3 cut(s)	261, 432, 611
Tru9I	TTAA	3 cut(s)	261, 432, 611
TseI	GCWGC	2 cut(s)	362, 437
TspDTI	ATGAA	2 cut(s)	578, 611
VneI	GTGCAC	1 cut(s)	414
VpaK11BI	GGWCC	2 cut(s)	347, 692
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	3 cut(s)	16, 98, 661
XhoI	CTCGAG	1 cut(s)	103
XspI	CTAG	5 cut(s)	45, 174, 312, 402, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.