Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008109

Physical Location & Seq

Genomic Coordinates Reverse (-)

33351270 .. 33357273

Gene Structure 6004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTGCAGTTGAAAATTTAGACATTGAAAGTGGAGGCCATACTAGTCAAGAAGATGCAGGCTTGGAGCTTCTTTGGAGCAAGAGACTCAAAAACAAATTCTTGAATAGTAATTTGGGGGTGTTTTTGAGTTCCAGTGAGTCAATTATCTGCAAATATGGCATTCAATCATCTAGGAGTTTGGAAAGATATGGCCAAGTTATGATTGAAAGTGAGGTAGTAATGAATTCAGAAGAGAGTCGAGGGCATTTGAACCTTGCAGAGAAAACATATGAGAATGAGAGGCACAGGAATACCAACTCTAGGAATGCTCTGAAGCCACCGCGACCTCCTAAAGGTCCATCACTCGATGCTGCTGATCAGAAGTTGGTTAGGGAGATCGTGGAGCTTGCTAGGAGAAAGCGTGCAAGAATTCAACAAATTAAGGCAGCAAAGAAGACGAAAGCAACCAAGTCATCATCTGTGCAAAGTGGCATATCTGCCATGATCGTCACACTATTGTTCTTCTGTGTCATAATATTTCAAGGTGTAAGCTCCACAACTGTTCCAAATATGAATACACAAGGGTCTCCAGAGCCAGCAGTTGCAACAGCTGGAGATTTAATTTTTCTTCATTACTCCCAAAGCACGATACCTCGTTCTAGCTTTCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.1

Weight (kDa)

9.59

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900
malus_domestica	MD09G1285700.v1.1 MD17G1278300.v1.1
prunus_persica	Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1
pyrus_communis	pycom09g19290
rosa_chinensis	RchiOBHm_Chr3g0487151
rosa_laevigata	RLG00000023026
rosa_multiflora	Rmu_sc0003329.1_g000004 Rmu_sc0003843.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395100
rosa_rugosa	Rorug03G0231600 Rorug03G0231600 Rorug03G0231700
rosa_samantha	Rh3AG279700 Rh3BG315800 Rh3CG313900 Rh3DG311100
rosa_wichuraiana	Rw3G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	325
AciI	CCGC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	4 cut(s)	16, 98, 226, 411
AcuI	CTGAAG	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	303, 335
AgsI	TTSAA	8 cut(s)	14, 29, 106, 167, 209, 253, 416, 524
AhlI	ACTAGT	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	5 cut(s)	70, 388, 534, 593, 645
AluI	AGCT	5 cut(s)	70, 388, 534, 593, 645
Alw26I	GTCTC	2 cut(s)	79, 573
AoxI	GGCC	2 cut(s)	37, 193
ApeKI	GCWGC	3 cut(s)	5, 353, 428
ApoI	RAATTY	4 cut(s)	16, 98, 226, 411
AspS9I	GGNCC	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	2 cut(s)	340, 440
BccI	CCATC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	79, 573
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	5 cut(s)	45, 174, 303, 393, 642
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	3 cut(s)	6, 354, 429
BlsI	GCNGC	3 cut(s)	7, 355, 430
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmsI	GCATC	2 cut(s)	46, 340
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	2 cut(s)	555, 615
BsaI	GGTCTC	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 335
Bse1I	ACTGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	303, 335
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	340, 440
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	2 cut(s)	39, 195
BslI	CCNNNNNNNGG	2 cut(s)	303, 335
BsmAI	GTCTC	2 cut(s)	79, 573
BsmI	GAATGC	2 cut(s)	162, 313
BsnI	GGCC	2 cut(s)	39, 195
Bso31I	GGTCTC	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	358, 378, 486
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	39, 195
BspFNI	CGCG	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	135
BssMI	GATC	3 cut(s)	358, 378, 486
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	4 cut(s)	61, 390, 405, 579
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	325
BstKTI	GATC	3 cut(s)	361, 381, 489
BstMAI	GTCTC	2 cut(s)	79, 573
BstMBI	GATC	3 cut(s)	358, 378, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	340, 440
BstV2I	GAAGAC	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	39, 195
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	4 cut(s)	61, 390, 405, 579
Cfr13I	GGNCC	1 cut(s)	338
CviAII	CATG	1 cut(s)	484
DpnI	GATC	3 cut(s)	360, 380, 488
DpnII	GATC	3 cut(s)	358, 378, 486
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	226, 411
FaeI	CATG	1 cut(s)	487
FatI	CATG	1 cut(s)	483
FauNDI	CATATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	6, 354, 429
Fsp4HI	GCNGC	3 cut(s)	6, 354, 429
FspBI	CTAG	5 cut(s)	45, 174, 303, 393, 642
GluI	GCNGC	3 cut(s)	6, 354, 429
GsuI	CTGGAG	2 cut(s)	555, 615
HaeIII	GGCC	2 cut(s)	39, 195
Hin1II	CATG	1 cut(s)	487
HinfI	GANTC	3 cut(s)	87, 140, 238
Hpy188I	TCNGA	4 cut(s)	232, 315, 363, 651
Hpy188III	TCNNGA	3 cut(s)	50, 103, 572
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	7 cut(s)	8, 59, 153, 260, 407, 466, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	358, 378, 486
LmnI	GCTCC	4 cut(s)	67, 78, 385, 539
LpnPI	CCDG	6 cut(s)	45, 148, 274, 579, 585, 591
Lsp1109I	GCAGC	2 cut(s)	340, 440
LweI	GCATC	2 cut(s)	46, 340
MaeI	CTAG	5 cut(s)	45, 174, 303, 393, 642
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	3 cut(s)	360, 380, 488
MboI	GATC	3 cut(s)	358, 378, 486
MboII	GAAGA	5 cut(s)	65, 245, 448, 496, 602
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	8 cut(s)	16, 98, 112, 144, 226, 411, 420, 603
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	81, 149, 247
MnlI	CCTC	6 cut(s)	29, 208, 236, 276, 339, 645
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	423, 602
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	593
Mva1269I	GAATGC	2 cut(s)	162, 313
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	3 cut(s)	358, 378, 486
NlaIII	CATG	1 cut(s)	487
NmuCI	GTSAC	1 cut(s)	490
PctI	GAATGC	2 cut(s)	162, 313
PkrI	GCNGC	3 cut(s)	7, 355, 430
PleI	GAGTC	3 cut(s)	81, 148, 246
PpsI	GAGTC	3 cut(s)	81, 148, 246
PspPI	GGNCC	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	423, 602
SatI	GCNGC	3 cut(s)	6, 354, 429
Sau3AI	GATC	3 cut(s)	358, 378, 486
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	3 cut(s)	81, 149, 247
SfaNI	GCATC	2 cut(s)	46, 340
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	8 cut(s)	16, 98, 112, 144, 226, 411, 420, 603
SsiI	CCGC	1 cut(s)	323
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	5 cut(s)	45, 174, 303, 393, 642
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	2 cut(s)	241, 348
TasI	AATT	8 cut(s)	16, 98, 112, 144, 226, 411, 420, 603
Tru1I	TTAA	2 cut(s)	423, 602
Tru9I	TTAA	2 cut(s)	423, 602
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	3 cut(s)	5, 353, 428
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	239, 569, 602
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	338
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	4 cut(s)	16, 98, 226, 411
XspI	CTAG	5 cut(s)	45, 174, 303, 393, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.