Rmu_sc0003843.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003843.1
OG0008109
Physical Location & Seq
Forward (+)
29915 .. 30340
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003843.1_g000007.1.cds

Sequence Viewer

Length: 426 bp
atgtgcaaatatggcattcaatcatctaggagtttggaaagatatggccaagttatgattgaaagtggggaggtaaaggtagtaatgaattcagaagagagtcgagggcatttgaaccttgcagagaaaacatatgagaatgagaggcacaggaataccaactctaggaatgctctgaagccaccgcgacctcctaaaggtccatcactcgatgctgctgatcagaagttggtgagggagatcgtggagcttgctaggagaaagcgtgcaagaattcaacaaatgaaggcagcaaagaagacgaaagcaaccaagtcatcatctgtgcaaagtggcatatctgccatgatcatcacactattgttcttctgtgtcataatatttcaaggtagacttttcccttctcttttcatcttttgtatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.02

Weight (kDa)

10.18

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 391
AccII CGCG 1 cut(s) 187
AciI CCGC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 88, 273
AcuI CTGAAG 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 165, 197
AgsI TTSAA 5 cut(s) 20, 62, 115, 278, 386
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 215, 290
ApoI RAATTY 2 cut(s) 88, 273
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 202, 302
BccI CCATC 1 cut(s) 211
BclI TGATCA 2 cut(s) 220, 348
BfaI CTAG 3 cut(s) 27, 165, 255
BisI GCNGC 2 cut(s) 216, 291
BlsI GCNGC 2 cut(s) 217, 292
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 197
BseLI CCNNNNNNNGG 2 cut(s) 165, 197
BseXI GCAGC 2 cut(s) 202, 302
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 165, 197
BsmI GAATGC 2 cut(s) 15, 175
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 3 cut(s) 220, 240, 348
BspACI CCGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 48
BspFNI CGCG 1 cut(s) 187
BssMI GATC 3 cut(s) 220, 240, 348
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 252, 267
BstENI CCTNNNNNAGG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 3 cut(s) 223, 243, 351
BstMBI GATC 3 cut(s) 220, 240, 348
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 202, 302
BstV2I GAAGAC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 252, 267
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 1 cut(s) 346
CviJI RGCY 3 cut(s) 48, 181, 250
CviKI_1 RGCY 3 cut(s) 48, 181, 250
DpnI GATC 3 cut(s) 222, 242, 350
DpnII GATC 3 cut(s) 220, 240, 348
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 195
EcoRI GAATTC 2 cut(s) 88, 273
FaeI CATG 1 cut(s) 349
FaiI YATR 9 cut(s) 12, 45, 56, 133, 135, 338, 347, 377, 422
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 1 cut(s) 345
FauNDI CATATG 1 cut(s) 133
FbaI TGATCA 2 cut(s) 220, 348
FblI GTMKAC 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 216, 291
Fsp4HI GCNGC 2 cut(s) 216, 291
FspBI CTAG 3 cut(s) 27, 165, 255
GluI GCNGC 2 cut(s) 216, 291
HaeIII GGCC 1 cut(s) 48
Hin1II CATG 1 cut(s) 349
HinfI GANTC 1 cut(s) 100
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 3 cut(s) 94, 177, 225
Hpy8I GTNNAC 1 cut(s) 392
HpyAV CCTTC 2 cut(s) 280, 411
HpyCH4V TGCA 4 cut(s) 6, 122, 269, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
Hsp92II CATG 1 cut(s) 349
Ksp22I TGATCA 2 cut(s) 220, 348
Kzo9I GATC 3 cut(s) 220, 240, 348
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 1 cut(s) 136
Lsp1109I GCAGC 2 cut(s) 202, 302
LweI GCATC 1 cut(s) 202
MaeI CTAG 3 cut(s) 27, 165, 255
MalI GATC 3 cut(s) 222, 242, 350
MboI GATC 3 cut(s) 220, 240, 348
MboII GAAGA 3 cut(s) 107, 310, 358
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 2 cut(s) 88, 273
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 5 cut(s) 64, 98, 138, 201, 228
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 48
Mva1269I GAATGC 2 cut(s) 15, 175
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeI CATATG 1 cut(s) 133
NdeII GATC 3 cut(s) 220, 240, 348
NlaIII CATG 1 cut(s) 349
PctI GAATGC 2 cut(s) 15, 175
PkrI GCNGC 2 cut(s) 217, 292
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 200
SatI GCNGC 2 cut(s) 216, 291
Sau3AI GATC 3 cut(s) 220, 240, 348
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 109
SetI ASST 7 cut(s) 75, 81, 120, 193, 202, 252, 391
SfaNI GCATC 1 cut(s) 202
SinI GGWCC 1 cut(s) 200
Sse9I AATT 2 cut(s) 88, 273
SsiI CCGC 1 cut(s) 185
SspI AATATT 1 cut(s) 381
SspMI CTAG 3 cut(s) 27, 165, 255
TaqI TCGA 2 cut(s) 103, 210
TasI AATT 2 cut(s) 88, 273
TseI GCWGC 2 cut(s) 215, 290
TspDTI ATGAA 3 cut(s) 101, 299, 400
VpaK11BI GGWCC 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 195
XapI RAATTY 2 cut(s) 88, 273
XmiI GTMKAC 1 cut(s) 391
XspI CTAG 3 cut(s) 27, 165, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.