Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008109

Physical Location & Seq

Genomic Coordinates Reverse (-)

495276 .. 498845

Gene Structure 3570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTCCCAGAGAAAAAGGATTTGAATTAGACCTTGAAAGTGGGGGGAGTACTAGTGAAGAAGATGCAAGCTTAGAGCTTGTTTCAAGCAAAGGACCAAAAAAGAAATTCTTGAGTAGTGATTTGGGTGGGTTACAGAGTTCCAATGAATCAGTTGTGTGTACATGTGGTATTGAATCATCTAGCAGTTCAGAGAAATCTGGTGAGGTTACAAATGACAGTGTGGAGTTACTAATAGAAAGGAATTCAGAAGTGGAAGAGAATCAAGGACATATGACCCTTGCAGAAAAGACGAGCGAGAATGAGTGGCGTAGGAAGACCAACTCTAGGAATGCGCCTAAGCCACCACGACCTCCTAGAGGTCCATCACTGGATGCCGCTGACCAGAAGTTGGTTAGGGAGATCACTGAGCTGGCCAAGAGAAAGCGTGCACGAATTGAGCAAAGGAAAGCAGCGAAGAAGATGAAAGCATCAAAGTCATCATCTTTACAAAGTGGCATATCTGCTATGATCATCACATTACTGTTCTTCTTTGTCATAATCTTTCAAGGGATAAGTTCCAGAAGTGTTCCAAATGTGATTATGCAGGGGTCTCCTGAGCCAGCAGTCCTAACTGAAGGTTTAGTCTCTGTTCAATTCTACAAAAGCAGCCTACCCAAATCTACTTATCAAGGTGTCGTTGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

24.97

Weight (kDa)

7.7

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900
malus_domestica	MD09G1285700.v1.1 MD17G1278300.v1.1
prunus_persica	Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1
pyrus_communis	pycom09g19290
rosa_chinensis	RchiOBHm_Chr3g0487151
rosa_laevigata	RLG00000023026
rosa_multiflora	Rmu_sc0003329.1_g000004 Rmu_sc0003843.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395100
rosa_rugosa	Rorug03G0231600 Rorug03G0231600 Rorug03G0231700
rosa_samantha	Rh3AG279700 Rh3BG315800 Rh3CG313900 Rh3DG311100
rosa_wichuraiana	Rw3G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AciI	CCGC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	107, 244
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	2 cut(s)	52, 163
AfiI	CCNNNNNNNGG	3 cut(s)	327, 359, 391
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	7 cut(s)	26, 38, 87, 176, 548, 635, 683
AhlI	ACTAGT	1 cut(s)	53
AluBI	AGCT	3 cut(s)	72, 79, 412
AluI	AGCT	3 cut(s)	72, 79, 412
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	2 cut(s)	597, 631
Alw44I	GTGCAC	1 cut(s)	429
AoxI	GGCC	1 cut(s)	414
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	2 cut(s)	452, 648
ApoI	RAATTY	2 cut(s)	107, 244
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	2 cut(s)	95, 362
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	95, 362
BaeGI	GKGCMC	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	2 cut(s)	464, 660
BccI	CCATC	1 cut(s)	373
BclI	TGATCA	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	597, 631
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	5 cut(s)	54, 183, 327, 357, 688
BisI	GCNGC	3 cut(s)	378, 453, 649
BlsI	GCNGC	3 cut(s)	379, 454, 650
BmcAI	AGTACT	1 cut(s)	52
Bme18I	GGWCC	2 cut(s)	95, 362
BmgT120I	GGNCC	2 cut(s)	95, 362
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	55, 364, 479
BpiI	GAAGAC	1 cut(s)	323
Bpu10I	CCTNAGC	2 cut(s)	339, 597
BpuEI	CTTGAG	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	597
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 359, 391
Bse1I	ACTGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	3 cut(s)	327, 359, 391
BseMII	CTCAG	2 cut(s)	399, 588
BseNI	ACTGG	1 cut(s)	375
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	464, 660
BshFI	GGCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	327, 359, 391
BsmAI	GTCTC	2 cut(s)	597, 631
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	597
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp1407I	TGTACA	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	402, 510
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	400, 589
BspLI	GGNNCC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	597
BsrGI	TGTACA	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	402, 510
Bst4CI	ACNGT	2 cut(s)	221, 525
Bst6I	CTCTTC	1 cut(s)	252
BstAUI	TGTACA	1 cut(s)	161
BstC8I	GCNNGC	4 cut(s)	70, 414, 429, 603
BstDEI	CTNAG	4 cut(s)	73, 339, 408, 597
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	405, 513
BstMAI	GTCTC	2 cut(s)	597, 631
BstMBI	GATC	2 cut(s)	402, 510
BstNSI	RCATGY	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	464, 660
BstV2I	GAAGAC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	226, 368, 405
Cac8I	GCNNGC	4 cut(s)	70, 414, 429, 603
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	95, 362
Csp6I	GTAC	2 cut(s)	51, 162
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	8 cut(s)	5, 72, 79, 343, 412, 416, 601, 651
CviKI_1	RGCY	8 cut(s)	5, 72, 79, 343, 412, 416, 601, 651
CviQI	GTAC	2 cut(s)	51, 162
DdeI	CTNAG	4 cut(s)	73, 339, 408, 597
DpnI	GATC	2 cut(s)	404, 512
DpnII	GATC	2 cut(s)	402, 510
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	95, 362
Eco57I	CTGAAG	1 cut(s)	636
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	244
FaeI	CATG	1 cut(s)	168
FaiI	YATR	7 cut(s)	166, 273, 275, 500, 509, 539, 584
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	1 cut(s)	164
FauNDI	CATATG	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	3 cut(s)	378, 453, 649
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	3 cut(s)	378, 453, 649
FspBI	CTAG	5 cut(s)	54, 183, 327, 357, 688
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	3 cut(s)	378, 453, 649
HaeIII	GGCC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	3 cut(s)	149, 176, 262
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	162, 431
Hpy188I	TCNGA	2 cut(s)	193, 250
Hpy188III	TCNNGA	3 cut(s)	112, 561, 596
Hpy8I	GTNNAC	2 cut(s)	162, 431
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	2 cut(s)	221, 525
HpyCH4V	TGCA	4 cut(s)	68, 284, 431, 586
HpyF3I	CTNAG	4 cut(s)	73, 339, 408, 597
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	402, 510
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	9 cut(s)	22, 186, 356, 398, 398, 572, 574, 609, 615
Lsp1109I	GCAGC	2 cut(s)	464, 660
LweI	GCATC	3 cut(s)	55, 364, 479
MaeI	CTAG	5 cut(s)	54, 183, 327, 357, 688
MaeIII	GTNAC	3 cut(s)	132, 208, 228
MalI	GATC	2 cut(s)	404, 512
MboI	GATC	2 cut(s)	402, 510
MboII	GAAGA	7 cut(s)	71, 74, 269, 328, 469, 472, 520
MhlI	GDGCHC	1 cut(s)	433
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	5 cut(s)	26, 107, 244, 435, 635
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	3 cut(s)	199, 353, 363
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	337
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	2 cut(s)	402, 510
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	168
PciI	ACATGT	1 cut(s)	164
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	3 cut(s)	149, 176, 262
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	379, 454, 650
PscI	ACATGT	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	95, 362
RsaI	GTAC	2 cut(s)	52, 163
RsaNI	GTAC	2 cut(s)	51, 162
SatI	GCNGC	3 cut(s)	378, 453, 649
Sau3AI	GATC	2 cut(s)	402, 510
Sau96I	GGNCC	2 cut(s)	95, 362
ScaI	AGTACT	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	9 cut(s)	36, 74, 81, 210, 355, 364, 414, 622, 676
SfaNI	GCATC	3 cut(s)	55, 364, 479
SinI	GGWCC	2 cut(s)	95, 362
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	5 cut(s)	26, 107, 244, 435, 635
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	5 cut(s)	54, 183, 327, 357, 688
TaaI	ACNGT	2 cut(s)	221, 525
TasI	AATT	5 cut(s)	26, 107, 244, 435, 635
TatI	WGTACW	2 cut(s)	50, 161
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	3 cut(s)	149, 176, 262
TscAI	CASTG	3 cut(s)	226, 375, 412
TseI	GCWGC	2 cut(s)	452, 648
TspDTI	ATGAA	2 cut(s)	162, 479
TspRI	CASTG	3 cut(s)	226, 375, 412
Van91I	CCANNNNNTGG	1 cut(s)	391
VneI	GTGCAC	1 cut(s)	429
VpaK11BI	GGWCC	2 cut(s)	95, 362
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	2 cut(s)	107, 244
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	5 cut(s)	54, 183, 327, 357, 688
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.