Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008109

Physical Location & Seq

Genomic Coordinates Forward (+)

33824048 .. 33824997

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1278300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTCTAAAAGAAAAACAGTTTGAATTTGACCTTGAAAGTGGAGGGGGTACTCGTGAAGAAGATGAGAGCTTAGACGTTGTTTCAAACAAAAGACCGAAATATAAATTCTTGGGTAGTGTTTTGGGAGGGTTGATGAATTCCAATGAATCAATCATGTTTACATGTGGCGTTGTATCATCTACCAGTTCAGAAAAATCTGGGCAGGTTTCAAATGCTAGTGTGGAGTTGGTAGTAGAAAGGAATTCAGAAGGGGAGGAGAGTCAAGGACATATGACCCTTGCAGAAAAGGCATGTGAGAATGATCGGCCTAGGAAGACCAACTCTAGGAATGCTTCTAAGCCACCACGACCTCCTAAACCTCCATCACTTGATGCAGCCGACCAGAAGTTGGTAAGGGAGATCATCGAGCTCGCCAAGAGGAAGCGAGCGAGAATTGAAAAGATGAAAATAGTAAAGAAGATAAAAGCATCCAAGTCATCCTCGTTACACAGTGGCATATCTGCTATGCTCATCACACTACTCTTCTTCTTTGTCATAATCTTTCAAGGTAAGATTTGCTTTTCAGCATTTAATTGGGCCCTTTTCCTTCCCGTCTTCTTTTTATATGTCATACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.94

Weight (kDa)

9.34

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900
malus_domestica	MD09G1285700.v1.1 MD17G1278300.v1.1
prunus_persica	Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1
pyrus_communis	pycom09g19290
rosa_chinensis	RchiOBHm_Chr3g0487151
rosa_laevigata	RLG00000023026
rosa_multiflora	Rmu_sc0003329.1_g000004 Rmu_sc0003843.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395100
rosa_rugosa	Rorug03G0231600 Rorug03G0231600 Rorug03G0231700
rosa_samantha	Rh3AG279700 Rh3BG315800 Rh3CG313900 Rh3DG311100
rosa_wichuraiana	Rw3G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	391
AcsI	RAATTY	4 cut(s)	26, 107, 139, 244
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	2 cut(s)	327, 391
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	6 cut(s)	26, 38, 87, 213, 440, 548
AluBI	AGCT	2 cut(s)	72, 412
AluI	AGCT	2 cut(s)	72, 412
Alw21I	GWGCWC	1 cut(s)	414
AoxI	GGCC	2 cut(s)	308, 579
ApaI	GGGCCC	1 cut(s)	583
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	4 cut(s)	26, 107, 139, 244
AspA2I	CCTAGG	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	579, 580
AvrII	CCTAGG	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	583
BanII	GRGCYC	2 cut(s)	414, 583
BauI	CACGAG	1 cut(s)	54
BbsI	GAAGAC	2 cut(s)	323, 589
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	1 cut(s)	373
BfaI	CTAG	3 cut(s)	219, 312, 327
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	378
BlnI	CCTAGG	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	579, 580
BmiI	GGNNCC	1 cut(s)	581
BmsI	GCATC	2 cut(s)	364, 479
BpiI	GAAGAC	2 cut(s)	323, 589
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 391
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	2 cut(s)	470, 479
BseLI	CCNNNNNNNGG	2 cut(s)	327, 391
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	1 cut(s)	389
BshFI	GGCC	2 cut(s)	310, 581
BsiHKAI	GWGCWC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	327, 391
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	310, 581
Bsp120I	GGGCCC	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	414, 583
Bsp143I	GATC	2 cut(s)	304, 402
BspANI	GGCC	2 cut(s)	310, 581
BspLI	GGNNCC	1 cut(s)	581
BspMI	ACCTGC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	2 cut(s)	304, 402
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	21, 494
Bst6I	CTCTTC	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	414, 429
BstDEI	CTNAG	2 cut(s)	73, 339
BstF5I	GGATG	2 cut(s)	470, 479
BstKTI	GATC	2 cut(s)	307, 405
BstMBI	GATC	2 cut(s)	304, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNSI	RCATGY	2 cut(s)	168, 297
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	389
BstV2I	GAAGAC	2 cut(s)	323, 589
BsuRI	GGCC	2 cut(s)	310, 581
BtsCI	GGATG	2 cut(s)	470, 479
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	414, 429
Cfr13I	GGNCC	2 cut(s)	579, 580
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	3 cut(s)	157, 165, 294
CviJI	RGCY	7 cut(s)	5, 72, 310, 343, 380, 412, 581
CviKI_1	RGCY	7 cut(s)	5, 72, 310, 343, 380, 412, 581
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	2 cut(s)	73, 339
DpnI	GATC	2 cut(s)	306, 404
DpnII	GATC	2 cut(s)	304, 402
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	311
Eco24I	GRGCYC	2 cut(s)	414, 583
Eco53kI	GAGCTC	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRI	GAATTC	2 cut(s)	139, 244
EcoT14I	CCWWGG	1 cut(s)	311
EcoT38I	GRGCYC	2 cut(s)	414, 583
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	3 cut(s)	160, 168, 297
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FatI	CATG	3 cut(s)	156, 164, 293
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	2 cut(s)	457, 466
FriOI	GRGCYC	2 cut(s)	414, 583
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	3 cut(s)	219, 312, 327
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	310, 581
Hin1II	CATG	3 cut(s)	160, 168, 297
HinfI	GANTC	2 cut(s)	149, 262
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	193, 250
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	245, 599
HpyCH4III	ACNGT	2 cut(s)	21, 494
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	284, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	73, 339
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	160, 168, 297
Kzo9I	GATC	2 cut(s)	304, 402
LpnPI	CCDG	4 cut(s)	186, 191, 199, 398
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	2 cut(s)	364, 479
MaeI	CTAG	3 cut(s)	219, 312, 327
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	486
MalI	GATC	2 cut(s)	306, 404
MboI	GATC	2 cut(s)	304, 402
MboII	GAAGA	7 cut(s)	71, 74, 328, 472, 517, 520, 589
MhlI	GDGCHC	2 cut(s)	414, 583
MluCI	AATT	6 cut(s)	26, 107, 139, 244, 435, 574
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	7 cut(s)	38, 122, 250, 363, 372, 414, 493
MseI	TTAA	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	2 cut(s)	304, 402
NlaIII	CATG	3 cut(s)	160, 168, 297
NlaIV	GGNNCC	1 cut(s)	581
NspI	RCATGY	2 cut(s)	168, 297
PciI	ACATGT	1 cut(s)	164
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PscI	ACATGT	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	581
PspOMI	GGGCCC	1 cut(s)	579
PspPI	GGNCC	2 cut(s)	579, 580
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	2 cut(s)	304, 402
Sau96I	GGNCC	2 cut(s)	579, 580
SchI	GAGTC	1 cut(s)	271
SduI	GDGCHC	2 cut(s)	414, 583
SetI	ASST	8 cut(s)	36, 74, 81, 210, 355, 364, 414, 553
SfaNI	GCATC	2 cut(s)	364, 479
Sse9I	AATT	6 cut(s)	26, 107, 139, 244, 435, 574
SspMI	CTAG	3 cut(s)	219, 312, 327
SstI	GAGCTC	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	21, 494
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	408
TaqII	GACCGA	1 cut(s)	112
TasI	AATT	6 cut(s)	26, 107, 139, 244, 435, 574
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	3 cut(s)	152, 162, 461
TspRI	CASTG	1 cut(s)	499
Van91I	CCANNNNNTGG	1 cut(s)	391
XapI	RAATTY	4 cut(s)	26, 107, 139, 244
XceI	RCATGY	2 cut(s)	168, 297
XmaJI	CCTAGG	1 cut(s)	311
XspI	CTAG	3 cut(s)	219, 312, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.