Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008109

Physical Location & Seq

Genomic Coordinates Forward (+)

36392745 .. 36395368

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1285700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTTCAGGGGAAAAAGAGTTTGAAATAGACCTTGAAAGTGGAGGGTGTACTAGTAAAGAAGATGCGAGCTTAGATGTTGTTTCGAGCAACGGACAGAGAATTAAGTTCTTGGGTAGTGTTTTCGGTTGGTTTTTGCATTTGAATGAATCAATTACATGTACATGTGGCATTGTATCATCTAGCAGTCTGGAAAAATCTGGCGAGGTTTCGAATGTCAGTGTAGAGACACTAATAGAAAGGAATTCAGAAGGGGAAGAGAGTCAAGGACATATGCCCCGAGCAGAAAAGGCGTGTGAGAATGAACAGTGTAAGAAGAAAAACTCTAGGAATGCTCCTAAGCCACCACGACCTCCTAAACGTCCATCACTGGATGCCGCTGACCAGAAGTTGGTTAGGGAGATCACTGAGCTGGCCAAGAGAAAGCGTGCAAGAATTGAACAAATGAAAGTAGCAAAGAAGATGAAAGCATCCAAGTCATCCTCTTTATACAGCGGCATATCTGCTCTGATCATCACACTACTCTTCTTCGTCGTAATCTTTCAAGGGATAAGCTCCAGAAGCGTTCCAACTGTGAGTACACAGGGGTCTCCTGAGCCAGCAATCGCAACAACTCAAGGTTTTGTCTCAGTTGAATACCAAAAAAGCGACATACAACGTTCTACCAATCAAAACTTTGGGGAAGAGATTTCCCGTTCAGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

25.6

Weight (kDa)

8.55

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900
malus_domestica	MD09G1285700.v1.1 MD17G1278300.v1.1
prunus_persica	Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1
pyrus_communis	pycom09g19290
rosa_chinensis	RchiOBHm_Chr3g0487151
rosa_laevigata	RLG00000023026
rosa_multiflora	Rmu_sc0003329.1_g000004 Rmu_sc0003843.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395100
rosa_rugosa	Rorug03G0231600 Rorug03G0231600 Rorug03G0231700
rosa_samantha	Rh3AG279700 Rh3BG315800 Rh3CG313900 Rh3DG311100
rosa_wichuraiana	Rw3G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AciI	CCGC	2 cut(s)	378, 495
AclI	AACGTT	1 cut(s)	658
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	244
AfaI	GTAC	3 cut(s)	52, 163, 580
AfiI	CCNNNNNNNGG	1 cut(s)	391
AflIII	ACRYGT	2 cut(s)	158, 164
AgsI	TTSAA	6 cut(s)	26, 38, 145, 440, 545, 635
AhlI	ACTAGT	1 cut(s)	53
AluBI	AGCT	3 cut(s)	72, 412, 555
AluI	AGCT	3 cut(s)	72, 412, 555
Alw26I	GTCTC	3 cut(s)	221, 594, 631
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	279
BalI	TGGCCA	1 cut(s)	416
BccI	CCATC	1 cut(s)	373
BclI	TGATCA	1 cut(s)	510
BcoDI	GTCTC	3 cut(s)	221, 594, 631
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	3 cut(s)	54, 183, 327
BisI	GCNGC	2 cut(s)	378, 496
BlsI	GCNGC	2 cut(s)	379, 497
BmeT110I	CYCGRG	1 cut(s)	279
BmsI	GCATC	3 cut(s)	55, 364, 479
BpmI	CTGGAG	1 cut(s)	541
Bpu10I	CCTNAGC	2 cut(s)	339, 594
Bpu14I	TTCGAA	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	375
BseGI	GGATG	3 cut(s)	379, 470, 479
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMII	CTCAG	3 cut(s)	399, 585, 642
BseNI	ACTGG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	3 cut(s)	221, 594, 631
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	594
BsoBI	CYCGRG	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1407I	TGTACA	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	402, 510
BspACI	CCGC	2 cut(s)	378, 495
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	3 cut(s)	400, 586, 641
BspT104I	TTCGAA	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	594
BsrGI	TGTACA	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	402, 510
Bst4CI	ACNGT	2 cut(s)	309, 574
Bst6I	CTCTTC	3 cut(s)	252, 530, 678
BstAUI	TGTACA	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	70, 414, 429, 600
BstDEI	CTNAG	5 cut(s)	73, 339, 408, 594, 628
BstF5I	GGATG	3 cut(s)	379, 470, 479
BstKTI	GATC	2 cut(s)	405, 513
BstMAI	GTCTC	3 cut(s)	221, 594, 631
BstMBI	GATC	2 cut(s)	402, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 561
BstNSI	RCATGY	2 cut(s)	162, 168
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	379, 470, 479
BtsIMutI	CAGTG	4 cut(s)	226, 314, 368, 405
Cac8I	GCNNGC	4 cut(s)	70, 414, 429, 600
Csp6I	GTAC	3 cut(s)	51, 162, 579
CviAII	CATG	2 cut(s)	159, 165
CviJI	RGCY	7 cut(s)	5, 72, 343, 412, 416, 555, 598
CviKI_1	RGCY	7 cut(s)	5, 72, 343, 412, 416, 555, 598
CviQI	GTAC	3 cut(s)	51, 162, 579
DdeI	CTNAG	5 cut(s)	73, 339, 408, 594, 628
DpnI	GATC	2 cut(s)	404, 512
DpnII	GATC	2 cut(s)	402, 510
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	3 cut(s)	252, 530, 678
EarI	CTCTTC	3 cut(s)	252, 530, 678
Eco31I	GGTCTC	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	244
FaeI	CATG	2 cut(s)	162, 168
FaiI	YATR	7 cut(s)	160, 166, 273, 275, 490, 500, 653
FatI	CATG	2 cut(s)	158, 164
FauNDI	CATATG	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	378, 496
FokI	GGATG	3 cut(s)	386, 457, 466
Fsp4HI	GCNGC	2 cut(s)	378, 496
FspBI	CTAG	3 cut(s)	54, 183, 327
GluI	GCNGC	2 cut(s)	378, 496
GsuI	CTGGAG	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	162, 168
HinfI	GANTC	2 cut(s)	149, 262
Hpy166II	GTNNAC	2 cut(s)	51, 581
Hpy188I	TCNGA	2 cut(s)	250, 510
Hpy188III	TCNNGA	3 cut(s)	191, 558, 593
Hpy8I	GTNNAC	2 cut(s)	51, 581
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	309, 574
HpyCH4IV	ACGT	2 cut(s)	361, 658
HpyCH4V	TGCA	2 cut(s)	139, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 561
HpyF3I	CTNAG	5 cut(s)	73, 339, 408, 594, 628
HpySE526I	ACGT	2 cut(s)	361, 658
Hsp92II	CATG	2 cut(s)	162, 168
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	402, 510
LmnI	GCTCC	2 cut(s)	340, 560
LweI	GCATC	3 cut(s)	55, 364, 479
MaeI	CTAG	3 cut(s)	54, 183, 327
MaeII	ACGT	2 cut(s)	361, 658
MalI	GATC	2 cut(s)	404, 512
MboI	GATC	2 cut(s)	402, 510
MboII	GAAGA	7 cut(s)	74, 269, 328, 472, 517, 520, 695
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	4 cut(s)	102, 153, 244, 435
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	593
MnlI	CCTC	4 cut(s)	38, 199, 363, 493
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	2 cut(s)	144, 163
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	380, 495
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	290, 561
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	2 cut(s)	402, 510
NlaIII	CATG	2 cut(s)	162, 168
NspI	RCATGY	2 cut(s)	162, 168
NspV	TTCGAA	1 cut(s)	212
PciI	ACATGT	2 cut(s)	158, 164
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	379, 497
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PscI	ACATGT	2 cut(s)	158, 164
Psp1406I	AACGTT	1 cut(s)	658
RsaI	GTAC	3 cut(s)	52, 163, 580
RsaNI	GTAC	3 cut(s)	51, 162, 579
RseI	CAYNNNNRTG	2 cut(s)	144, 163
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	378, 496
Sau3AI	GATC	2 cut(s)	402, 510
SchI	GAGTC	1 cut(s)	271
SfaNI	GCATC	3 cut(s)	55, 364, 479
SfuI	TTCGAA	1 cut(s)	212
SmiMI	CAYNNNNRTG	2 cut(s)	144, 163
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	4 cut(s)	102, 153, 244, 435
SsiI	CCGC	2 cut(s)	378, 495
SspMI	CTAG	3 cut(s)	54, 183, 327
TaaI	ACNGT	2 cut(s)	309, 574
TaiI	ACGT	2 cut(s)	364, 661
TaqI	TCGA	2 cut(s)	86, 212
TasI	AATT	4 cut(s)	102, 153, 244, 435
TatI	WGTACW	3 cut(s)	50, 161, 578
TauI	GCSGC	2 cut(s)	380, 498
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	4 cut(s)	226, 314, 375, 412
TspDTI	ATGAA	4 cut(s)	162, 318, 461, 479
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	4 cut(s)	226, 314, 375, 412
Van91I	CCANNNNNTGG	1 cut(s)	391
XapI	RAATTY	1 cut(s)	244
XceI	RCATGY	2 cut(s)	162, 168
XspI	CTAG	3 cut(s)	54, 183, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.