Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008109

Physical Location & Seq

Genomic Coordinates Forward (+)

20085154 .. 20087072

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTTCAGGAGAAAAAGAGTTTGAAATAGAACTTGAAAGTGGAGGGAGTACTAGTAAAGAAGTTGCGAGCTTAGATGTTGTTTCGAGCAACGGACAGAAAATTAAGTTCTTGGGTGGTGTTTTCGGTTGGTTTTTGCATTTGAATGAATCAATTACATGTACATGTGGCATTGCATCATCTAGCAGTCTGGAAAAATCTGGCGAGGTTTCGAATGTCAGTGTAGAGACACTAATAGAAAGGAATTCAGAAGGGGAAGAGAGTCAAGGACATATGCCCCGAGCAGAAAAGGCGTGTGAGAATGAGCAGTGTAAGAAGAAAAACTCTAGGAATGCTCCTAAGCCACCACGACCTCCTAAACGTCCATCACTGGATGCCGCTGACCAGAAGTTGGTTAGGGAGATCACTGAGCTGGCCAAGAGAAAGCGTGCAAGAATTGAACAAATGAAAGTAGCAAAGAAGATGAAAGCATCCAAGTCATCCTCTTTATACAGCGGCATATCTGCTCTGATCATCACACTACTCTTCTTCTTTGTCGTAATCTTTCAAGGGATAAGCTCCAGAAGCGTTCCAACTGTGGGTACACAGGGGTCTCCTGAGCCAGCAGTCGCAACAACTCAAGGTTTTGTCCCGGTTGAATACCACAAAAGTGACATACGACGTTCTACCAATCAAAACTTTGGGGAAGACCAGATTTCCCGTTCAGGTGGATGGGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.09

Weight (kDa)

9.0

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900
malus_domestica	MD09G1285700.v1.1 MD17G1278300.v1.1
prunus_persica	Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1
pyrus_communis	pycom09g19290
rosa_chinensis	RchiOBHm_Chr3g0487151
rosa_laevigata	RLG00000023026
rosa_multiflora	Rmu_sc0003329.1_g000004 Rmu_sc0003843.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395100
rosa_rugosa	Rorug03G0231600 Rorug03G0231600 Rorug03G0231700
rosa_samantha	Rh3AG279700 Rh3BG315800 Rh3CG313900 Rh3DG311100
rosa_wichuraiana	Rw3G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AciI	CCGC	2 cut(s)	378, 495
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	244
AfaI	GTAC	3 cut(s)	52, 163, 583
AfiI	CCNNNNNNNGG	2 cut(s)	391, 578
AflIII	ACRYGT	2 cut(s)	158, 164
AgsI	TTSAA	6 cut(s)	26, 38, 145, 440, 548, 638
AhlI	ACTAGT	1 cut(s)	53
AleI	CACNNNNGTG	1 cut(s)	648
AluBI	AGCT	3 cut(s)	72, 412, 558
AluI	AGCT	3 cut(s)	72, 412, 558
Alw26I	GTCTC	2 cut(s)	221, 597
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	632
AsuII	TTCGAA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	279
BalI	TGGCCA	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	693
BccI	CCATC	2 cut(s)	373, 705
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	632
BcoDI	GTCTC	2 cut(s)	221, 597
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	3 cut(s)	54, 183, 327
BisI	GCNGC	2 cut(s)	378, 496
BlsI	GCNGC	2 cut(s)	379, 497
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	3 cut(s)	185, 364, 479
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	544
Bpu10I	CCTNAGC	2 cut(s)	339, 597
Bpu14I	TTCGAA	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	632
BsaI	GGTCTC	1 cut(s)	597
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 578
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	171
BseGI	GGATG	4 cut(s)	379, 470, 479, 716
BseLI	CCNNNNNNNGG	2 cut(s)	391, 578
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	399, 588
BseNI	ACTGG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	391, 578
BsmAI	GTCTC	2 cut(s)	221, 597
BsmFI	GGGAC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1407I	TGTACA	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	402, 510
BspACI	CCGC	2 cut(s)	378, 495
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	400, 589
BspT104I	TTCGAA	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	597
BsrDI	GCAATG	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	402, 510
Bst4CI	ACNGT	1 cut(s)	577
Bst6I	CTCTTC	2 cut(s)	252, 530
BstAUI	TGTACA	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	70, 414, 429, 603
BstDEI	CTNAG	4 cut(s)	73, 339, 408, 597
BstF5I	GGATG	4 cut(s)	379, 470, 479, 716
BstKTI	GATC	2 cut(s)	405, 513
BstMAI	GTCTC	2 cut(s)	221, 597
BstMBI	GATC	2 cut(s)	402, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 564
BstNSI	RCATGY	2 cut(s)	162, 168
BstSCI	CCNGG	1 cut(s)	630
BstV2I	GAAGAC	1 cut(s)	693
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	4 cut(s)	379, 470, 479, 716
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	4 cut(s)	226, 314, 368, 405
Cac8I	GCNNGC	4 cut(s)	70, 414, 429, 603
Csp6I	GTAC	3 cut(s)	51, 162, 582
CviAII	CATG	2 cut(s)	159, 165
CviJI	RGCY	7 cut(s)	5, 72, 343, 412, 416, 558, 601
CviKI_1	RGCY	7 cut(s)	5, 72, 343, 412, 416, 558, 601
CviQI	GTAC	3 cut(s)	51, 162, 582
DdeI	CTNAG	4 cut(s)	73, 339, 408, 597
DpnI	GATC	2 cut(s)	404, 512
DpnII	GATC	2 cut(s)	402, 510
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	252, 530
EarI	CTCTTC	2 cut(s)	252, 530
Eco31I	GGTCTC	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	244
FaeI	CATG	2 cut(s)	162, 168
FaiI	YATR	7 cut(s)	160, 166, 273, 275, 490, 500, 656
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	2 cut(s)	158, 164
FauNDI	CATATG	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	378, 496
FokI	GGATG	3 cut(s)	386, 457, 466
Fsp4HI	GCNGC	2 cut(s)	378, 496
FspBI	CTAG	3 cut(s)	54, 183, 327
GluI	GCNGC	2 cut(s)	378, 496
GsuI	CTGGAG	1 cut(s)	544
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	632
Hin1II	CATG	2 cut(s)	162, 168
HinfI	GANTC	2 cut(s)	149, 262
HpaII	CCGG	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	2 cut(s)	250, 510
Hpy188III	TCNNGA	4 cut(s)	9, 191, 561, 596
Hpy8I	GTNNAC	1 cut(s)	584
Hpy99I	CGWCG	1 cut(s)	663
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4IV	ACGT	2 cut(s)	361, 661
HpyCH4V	TGCA	3 cut(s)	139, 176, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 564
HpyF3I	CTNAG	4 cut(s)	73, 339, 408, 597
HpySE526I	ACGT	2 cut(s)	361, 661
Hsp92II	CATG	2 cut(s)	162, 168
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	402, 510
LmnI	GCTCC	2 cut(s)	340, 563
LweI	GCATC	3 cut(s)	185, 364, 479
MaeI	CTAG	3 cut(s)	54, 183, 327
MaeII	ACGT	2 cut(s)	361, 661
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	2 cut(s)	404, 512
MboI	GATC	2 cut(s)	402, 510
MboII	GAAGA	6 cut(s)	269, 328, 472, 517, 520, 698
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	4 cut(s)	102, 153, 244, 435
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	4 cut(s)	38, 199, 363, 493
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	3 cut(s)	144, 163, 648
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	380, 495
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	290, 564
NciI	CCSGG	1 cut(s)	632
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	2 cut(s)	402, 510
NlaIII	CATG	2 cut(s)	162, 168
NmuCI	GTSAC	1 cut(s)	650
NspI	RCATGY	2 cut(s)	162, 168
NspV	TTCGAA	1 cut(s)	212
OliI	CACNNNNGTG	1 cut(s)	648
PciI	ACATGT	2 cut(s)	158, 164
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	379, 497
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PscI	ACATGT	2 cut(s)	158, 164
RsaI	GTAC	3 cut(s)	52, 163, 583
RsaNI	GTAC	3 cut(s)	51, 162, 582
RseI	CAYNNNNRTG	3 cut(s)	144, 163, 648
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	378, 496
Sau3AI	GATC	2 cut(s)	402, 510
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	632
SetI	ASST	9 cut(s)	74, 210, 355, 364, 414, 560, 625, 664, 709
SfaNI	GCATC	3 cut(s)	185, 364, 479
SfuI	TTCGAA	1 cut(s)	212
SmiMI	CAYNNNNRTG	3 cut(s)	144, 163, 648
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	4 cut(s)	102, 153, 244, 435
SsiI	CCGC	2 cut(s)	378, 495
SspMI	CTAG	3 cut(s)	54, 183, 327
StyD4I	CCNGG	1 cut(s)	630
TaaI	ACNGT	1 cut(s)	577
TaiI	ACGT	2 cut(s)	364, 664
TaqI	TCGA	2 cut(s)	86, 212
TasI	AATT	4 cut(s)	102, 153, 244, 435
TatI	WGTACW	2 cut(s)	50, 161
TauI	GCSGC	2 cut(s)	380, 498
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	4 cut(s)	226, 314, 375, 412
TseFI	GTSAC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	3 cut(s)	162, 461, 479
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	4 cut(s)	226, 314, 375, 412
Van91I	CCANNNNNTGG	1 cut(s)	391
XapI	RAATTY	1 cut(s)	244
XceI	RCATGY	2 cut(s)	162, 168
XspI	CTAG	3 cut(s)	54, 183, 327
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.