Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008109

Physical Location & Seq

Genomic Coordinates Forward (+)

16057628 .. 16060414

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTGCAGTTGAAAATTTAGACATTGAAAGTGGAGGCAATACTAGTCAAGAAGATGCAGGCTTGGAGCTTCTTTGGAGCAAGAGACTCAAAAACAATTTCTTGAATAGTAATTTGGGGGTGTTTTTGAGTTCCGGTGAGTCAATTATGTGCAAATATGGCATTCAATCATCTAGGAGTTTGGAAAGATATGGCCAAGTTATGATTGAAAGTGGGGAGGTAAAGGTAGTAATGAATTCAGAAGAGAGTCGAGGGCATTTGAACCTTGCAGAAAAAACATATGAGAAGGAGAGGCACAGGAATACCAGCTCTAGGAATGCTCTGAAGCCACCGCGACCTCCTAAACGTCCATCACTCGATGCTGCTGATCAGAAGTTGATTAGGGAGATCGTGGAGCTTGCTAGGAGAAAGCGTGCAAGAATTCAACAAATTAAGGCAGCAAAGAAGACGAAAGCAACCAAGTCATCATCTGTGCAAAGTGGCATATCTGCCATGATCATCACACTATTGTTCTTCTGTGTCATAATATTTCAAGGTGTAATTAGCTCCACAACTGTTCCAAATATGAATACACAAGGGTCTCCAGAGCCAGCATTTGCAACAGCTGGAGATTTTATTTTTCTTCATTACTCCCAAAGCACGATACCTCGTTCTAGCTTTCAGAATTCTGTCAAAGACCAGGTTTCTCGTTCAGGTCCGGGTGAAAAGGTGATGAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.57

Weight (kDa)

9.77

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900
malus_domestica	MD09G1285700.v1.1 MD17G1278300.v1.1
prunus_persica	Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1
pyrus_communis	pycom09g19290
rosa_chinensis	RchiOBHm_Chr3g0487151
rosa_laevigata	RLG00000023026
rosa_multiflora	Rmu_sc0003329.1_g000004 Rmu_sc0003843.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395100
rosa_rugosa	Rorug03G0231600 Rorug03G0231600 Rorug03G0231700
rosa_samantha	Rh3AG279700 Rh3BG315800 Rh3CG313900 Rh3DG311100
rosa_wichuraiana	Rw3G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AciI	CCGC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	4 cut(s)	16, 235, 420, 664
AcuI	CTGAAG	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	8 cut(s)	14, 29, 106, 167, 209, 262, 425, 533
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	678
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	6 cut(s)	70, 309, 397, 546, 605, 657
AluI	AGCT	6 cut(s)	70, 309, 397, 546, 605, 657
Alw26I	GTCTC	2 cut(s)	79, 585
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	5, 362, 437
ApoI	RAATTY	4 cut(s)	16, 235, 420, 664
AspS9I	GGNCC	1 cut(s)	695
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	3 cut(s)	149, 713, 721
AvaII	GGWCC	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	349, 449
BccI	CCATC	1 cut(s)	358
BciT130I	CCWGG	1 cut(s)	680
BclI	TGATCA	2 cut(s)	367, 495
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	79, 585
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	5 cut(s)	45, 174, 312, 402, 654
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	3 cut(s)	6, 363, 438
BlsI	GCNGC	3 cut(s)	7, 364, 439
Bme1390I	CCNGG	2 cut(s)	680, 699
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmrFI	CCNGG	2 cut(s)	680, 699
BmsI	GCATC	2 cut(s)	46, 349
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	2 cut(s)	567, 627
BpuMI	CCSGG	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	585
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	680
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	349, 449
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	135, 698
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	79, 585
BsmI	GAATGC	2 cut(s)	162, 322
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	585
Bsp143I	GATC	3 cut(s)	367, 387, 495
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	585
BssMI	GATC	3 cut(s)	367, 387, 495
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	61, 399, 414, 591
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	3 cut(s)	370, 390, 498
BstMAI	GTCTC	2 cut(s)	79, 585
BstMBI	GATC	3 cut(s)	367, 387, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	678, 697
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	349, 449
BstV2I	GAAGAC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	195
Cac8I	GCNNGC	4 cut(s)	61, 399, 414, 591
Cfr13I	GGNCC	1 cut(s)	695
CsiI	ACCWGGT	1 cut(s)	678
CviAII	CATG	1 cut(s)	493
DpnI	GATC	3 cut(s)	369, 389, 497
DpnII	GATC	3 cut(s)	367, 387, 495
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	344
EcoRI	GAATTC	3 cut(s)	235, 420, 664
EcoRII	CCWGG	1 cut(s)	678
FaeI	CATG	1 cut(s)	496
FatI	CATG	1 cut(s)	492
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	2 cut(s)	367, 495
Fnu4HI	GCNGC	3 cut(s)	6, 363, 438
Fsp4HI	GCNGC	3 cut(s)	6, 363, 438
FspBI	CTAG	5 cut(s)	45, 174, 312, 402, 654
GluI	GCNGC	3 cut(s)	6, 363, 438
GsuI	CTGGAG	2 cut(s)	567, 627
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	2 cut(s)	135, 698
Hin1II	CATG	1 cut(s)	496
HinfI	GANTC	3 cut(s)	87, 140, 247
HpaII	CCGG	2 cut(s)	135, 698
HphI	GGTGA	3 cut(s)	149, 713, 721
Hpy188I	TCNGA	4 cut(s)	241, 324, 372, 663
Hpy188III	TCNNGA	3 cut(s)	50, 103, 584
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	7 cut(s)	8, 59, 153, 269, 416, 475, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	496
Ksp22I	TGATCA	2 cut(s)	367, 495
Kzo9I	GATC	3 cut(s)	367, 387, 495
LmnI	GCTCC	4 cut(s)	67, 78, 394, 551
Lsp1109I	GCAGC	2 cut(s)	349, 449
LweI	GCATC	2 cut(s)	46, 349
MabI	ACCWGGT	1 cut(s)	678
MaeI	CTAG	5 cut(s)	45, 174, 312, 402, 654
MaeII	ACGT	1 cut(s)	346
MalI	GATC	3 cut(s)	369, 389, 497
MboI	GATC	3 cut(s)	367, 387, 495
MboII	GAAGA	5 cut(s)	65, 254, 457, 505, 614
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	9 cut(s)	16, 97, 112, 144, 235, 420, 429, 540, 664
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	81, 149, 256
MnlI	CCTC	6 cut(s)	29, 211, 245, 285, 348, 657
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	605
MspI	CCGG	2 cut(s)	135, 698
MspR9I	CCNGG	2 cut(s)	680, 699
Mva1269I	GAATGC	2 cut(s)	162, 322
MvaI	CCWGG	1 cut(s)	680
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	699
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	3 cut(s)	367, 387, 495
NlaIII	CATG	1 cut(s)	496
PctI	GAATGC	2 cut(s)	162, 322
PkrI	GCNGC	3 cut(s)	7, 364, 439
PleI	GAGTC	3 cut(s)	81, 148, 255
PpsI	GAGTC	3 cut(s)	81, 148, 255
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	6, 363, 438
Sau3AI	GATC	3 cut(s)	367, 387, 495
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	3 cut(s)	81, 149, 256
ScrFI	CCNGG	2 cut(s)	680, 699
SexAI	ACCWGGT	1 cut(s)	678
SfaNI	GCATC	2 cut(s)	46, 349
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	695
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	9 cut(s)	16, 97, 112, 144, 235, 420, 429, 540, 664
SsiI	CCGC	1 cut(s)	332
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	5 cut(s)	45, 174, 312, 402, 654
StyD4I	CCNGG	2 cut(s)	678, 697
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	250, 357
TasI	AATT	9 cut(s)	16, 97, 112, 144, 235, 420, 429, 540, 664
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseI	GCWGC	3 cut(s)	5, 362, 437
TspDTI	ATGAA	3 cut(s)	248, 581, 614
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	4 cut(s)	16, 235, 420, 664
XspI	CTAG	5 cut(s)	45, 174, 312, 402, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.