Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008109

Physical Location & Seq

Genomic Coordinates Reverse (-)

32265115 .. 32274958

Gene Structure 9844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G024790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTGCAGTTGAAAATTTAGACATTGAAAGTGGAGGCCATACTAGTCAAGAAGATGCAGGCTTGGAGCTTCTTTGGAGCAAGAGACTCAAAAACAAATTCTTGAATAGTAATTTGGGGGTGTTTTTGAGTTCCAGTGAGTCAATTATCTGCAAATATGGCATTCAATCATCTACGAGTTTGGAAAGATATGGCCAAGTTATGATTGAAAGTGAGGTAGTAATGAATTCAGAAGAGAGTCGAGGGCATTTGAACCTTGCAGAGAAAACATATGAGAATGAGAGGCACAGGAATACCAACTCTAGGAATGCTCTGAAGCCACCGCGACCTCCTAAAGGTCCATCACTCGATGCTGCTGATCAGAAGTTGGTTAGGGAGATCGTGGAGCTTGCTAGGAGAAAGCGTGCAAGAATTCAACAAATTAAGGCAGCAAAGAAGACGAAGAAAGCAACCAAGTCATCATCTGTGCAAAGTGGCATATCTGCCATGATCGTCACACTATTGTTCTTCTGTGTCATAATATTTCAAGGTGTAAGCTCCACAACTGTTCCAAATATGAATACACAAGGGTCTCCAGAGCCAGCAGTTGCAACAGCTGGAGATTTAATTTTTCTTCATTACTCCCAAAGCACGATACCTCGTTCTAGCTTTCAGAATTCTGTCAAAGACCAGGTTTCTCGTTCAGGTCCGGGTGAAAAGGTGATGAAGATATGTATAGATCAACCTTGCTTTTCCCCTACCAAAATAAAGAGAGGAATAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.0

Weight (kDa)

9.65

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900 FvH4_1g26900
malus_domestica	MD09G1285700.v1.1 MD17G1278300.v1.1
prunus_persica	Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1 Prupe.3G008100_v2.0.a1
pyrus_communis	pycom09g19290
rosa_chinensis	RchiOBHm_Chr3g0487151
rosa_laevigata	RLG00000023026
rosa_multiflora	Rmu_sc0003329.1_g000004 Rmu_sc0003843.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395100
rosa_rugosa	Rorug03G0231600 Rorug03G0231600 Rorug03G0231700
rosa_samantha	Rh3AG279700 Rh3BG315800 Rh3CG313900 Rh3DG311100
rosa_wichuraiana	Rw3G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	325
AciI	CCGC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	5 cut(s)	16, 98, 226, 411, 655
AcuI	CTGAAG	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	303, 335
AgsI	TTSAA	8 cut(s)	14, 29, 106, 167, 209, 253, 416, 527
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	669
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	5 cut(s)	70, 388, 537, 596, 648
AluI	AGCT	5 cut(s)	70, 388, 537, 596, 648
Alw26I	GTCTC	2 cut(s)	79, 576
AoxI	GGCC	2 cut(s)	37, 193
ApeKI	GCWGC	3 cut(s)	5, 353, 428
ApoI	RAATTY	5 cut(s)	16, 98, 226, 411, 655
AspS9I	GGNCC	2 cut(s)	338, 686
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	2 cut(s)	704, 712
AvaII	GGWCC	2 cut(s)	338, 686
BalI	TGGCCA	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	2 cut(s)	340, 440
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	671
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	2 cut(s)	79, 576
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	4 cut(s)	45, 303, 393, 645
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	3 cut(s)	6, 354, 429
BlsI	GCNGC	3 cut(s)	7, 355, 430
Bme1390I	CCNGG	2 cut(s)	671, 690
Bme18I	GGWCC	2 cut(s)	338, 686
BmgT120I	GGNCC	2 cut(s)	338, 686
BmrFI	CCNGG	2 cut(s)	671, 690
BmsI	GCATC	2 cut(s)	46, 340
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	2 cut(s)	558, 618
BpuMI	CCSGG	1 cut(s)	690
BsaI	GGTCTC	1 cut(s)	576
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 335
Bse1I	ACTGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	671
BseLI	CCNNNNNNNGG	2 cut(s)	303, 335
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	340, 440
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	2 cut(s)	39, 195
BsiSI	CCGG	1 cut(s)	689
BslI	CCNNNNNNNGG	2 cut(s)	303, 335
BsmAI	GTCTC	2 cut(s)	79, 576
BsmI	GAATGC	2 cut(s)	162, 313
BsnI	GGCC	2 cut(s)	39, 195
Bso31I	GGTCTC	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	358, 378, 489, 718
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	39, 195
BspFNI	CGCG	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	135
BssMI	GATC	4 cut(s)	358, 378, 489, 718
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	4 cut(s)	61, 390, 405, 582
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	325
BstKTI	GATC	4 cut(s)	361, 381, 492, 721
BstMAI	GTCTC	2 cut(s)	79, 576
BstMBI	GATC	4 cut(s)	358, 378, 489, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	669, 688
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	340, 440
BstV2I	GAAGAC	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	39, 195
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	4 cut(s)	61, 390, 405, 582
Cfr13I	GGNCC	2 cut(s)	338, 686
CsiI	ACCWGGT	1 cut(s)	669
CviAII	CATG	1 cut(s)	487
DpnI	GATC	4 cut(s)	360, 380, 491, 720
DpnII	GATC	4 cut(s)	358, 378, 489, 718
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	576
Eco47I	GGWCC	2 cut(s)	338, 686
Eco57I	CTGAAG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRI	GAATTC	3 cut(s)	226, 411, 655
EcoRII	CCWGG	1 cut(s)	669
FaeI	CATG	1 cut(s)	490
FatI	CATG	1 cut(s)	486
FauNDI	CATATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	6, 354, 429
Fsp4HI	GCNGC	3 cut(s)	6, 354, 429
FspBI	CTAG	4 cut(s)	45, 303, 393, 645
GluI	GCNGC	3 cut(s)	6, 354, 429
GsuI	CTGGAG	2 cut(s)	558, 618
HaeIII	GGCC	2 cut(s)	39, 195
HapII	CCGG	1 cut(s)	689
Hin1II	CATG	1 cut(s)	490
HinfI	GANTC	3 cut(s)	87, 140, 238
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	2 cut(s)	704, 712
Hpy188I	TCNGA	4 cut(s)	232, 315, 363, 654
Hpy188III	TCNNGA	3 cut(s)	50, 103, 575
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	7 cut(s)	8, 59, 153, 260, 407, 469, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	358, 378, 489, 718
LmnI	GCTCC	4 cut(s)	67, 78, 385, 542
Lsp1109I	GCAGC	2 cut(s)	340, 440
LweI	GCATC	2 cut(s)	46, 340
MabI	ACCWGGT	1 cut(s)	669
MaeI	CTAG	4 cut(s)	45, 303, 393, 645
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	4 cut(s)	360, 380, 491, 720
MboI	GATC	4 cut(s)	358, 378, 489, 718
MboII	GAAGA	7 cut(s)	65, 245, 448, 454, 499, 605, 718
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	9 cut(s)	16, 98, 112, 144, 226, 411, 420, 606, 655
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	81, 149, 247
MnlI	CCTC	7 cut(s)	29, 208, 236, 276, 339, 648, 746
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	423, 605
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	2 cut(s)	671, 690
Mva1269I	GAATGC	2 cut(s)	162, 313
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	4 cut(s)	358, 378, 489, 718
NlaIII	CATG	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	493
PctI	GAATGC	2 cut(s)	162, 313
PkrI	GCNGC	3 cut(s)	7, 355, 430
PleI	GAGTC	3 cut(s)	81, 148, 246
PpsI	GAGTC	3 cut(s)	81, 148, 246
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspPI	GGNCC	2 cut(s)	338, 686
PstI	CTGCAG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	423, 605
SatI	GCNGC	3 cut(s)	6, 354, 429
Sau3AI	GATC	4 cut(s)	358, 378, 489, 718
Sau96I	GGNCC	2 cut(s)	338, 686
SchI	GAGTC	3 cut(s)	81, 149, 247
ScrFI	CCNGG	2 cut(s)	671, 690
SexAI	ACCWGGT	1 cut(s)	669
SfaNI	GCATC	2 cut(s)	46, 340
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	338, 686
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	9 cut(s)	16, 98, 112, 144, 226, 411, 420, 606, 655
SsiI	CCGC	1 cut(s)	323
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	4 cut(s)	45, 303, 393, 645
StyD4I	CCNGG	2 cut(s)	669, 688
TaaI	ACNGT	1 cut(s)	547
TaqI	TCGA	2 cut(s)	241, 348
TasI	AATT	9 cut(s)	16, 98, 112, 144, 226, 411, 420, 606, 655
Tru1I	TTAA	2 cut(s)	423, 605
Tru9I	TTAA	2 cut(s)	423, 605
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	3 cut(s)	5, 353, 428
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	4 cut(s)	239, 572, 605, 719
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	338, 686
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	5 cut(s)	16, 98, 226, 411, 655
XspI	CTAG	4 cut(s)	45, 303, 393, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.