FvH4_1g27260

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017972
Physical Location & Seq
Reverse (-)
18993481 .. 18995920
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27260.t1

Sequence Viewer

Length: 495 bp
ATGAGATGGAGTATGGTGATGTTAGGGAGAGGTCTCCCTCTCCATGGAATGCAGGGCGGTGTGTTTGAAGCTTTCAGGGCTATTGGTGCCATTGAAGGTATCAGCAAGTTCAAGTTTGTGACTGGATCACTTATCAGCCTCCTTGAACAAAAGTTGATGGATTGTAACAAAGGTCTCACAACTAGAGGCTGCAGGGGCGGACAAGGAGCATTGGAAGTCGTGATGGGAAAGATGAAATCTGATAAACAATTGGTACTAGGCGTTAATCGTTACTGCTATTTAGTTTCAGATGGTAATGGCCGATTTATCATCGTGTTGATTAAAAGCTTCTTTGAGGTCAATGATCATCAGACAGACTCGGCCTCTCCTCCTTTACACCCGACTACCGCCCAGCCCTCCCTCCCAATTATTTCTCAATCCAAAACTCTAGCTTCGCCCCCTATCGCTTCTTCATCTCAGTCTGAGACCTCAAGGATTGATTCCACTGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004842 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010494 GO:0010498 GO:0010605 GO:0016567 GO:0016740 GO:0016787 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030054 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032446 GO:0032991 GO:0035770 GO:0036211 GO:0036464 GO:0042176 GO:0042177 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0060255 GO:0065007 GO:0070011 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

165

Amino Acids

17.68

Weight (kDa)

9.33

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 3 cut(s) 57, 198, 387
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 298
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 68, 95, 112, 146
AluBI AGCT 3 cut(s) 71, 327, 431
AluI AGCT 3 cut(s) 71, 327, 431
Alw26I GTCTC 3 cut(s) 38, 179, 458
AlwI GGATC 1 cut(s) 133
AoxI GGCC 2 cut(s) 298, 360
ApeKI GCWGC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 176
BccI CCATC 3 cut(s) 151, 217, 284
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 38, 179, 458
BfaI CTAG 3 cut(s) 183, 257, 428
BfmI CTRYAG 1 cut(s) 190
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 454
BsaI GGTCTC 3 cut(s) 38, 179, 458
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 127, 490
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 2 cut(s) 453, 470
BseNI ACTGG 2 cut(s) 127, 490
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 176
BseYI CCCAGC 1 cut(s) 390
BshFI GGCC 2 cut(s) 300, 362
BshNI GGYRCC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 3 cut(s) 38, 179, 458
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 2 cut(s) 300, 362
Bso31I GGTCTC 3 cut(s) 38, 179, 458
Bsp143I GATC 2 cut(s) 125, 343
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 3 cut(s) 57, 198, 387
BspANI GGCC 2 cut(s) 300, 362
BspCNI CTCAG 2 cut(s) 454, 469
BspLI GGNNCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 194
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 86
BspTNI GGTCTC 3 cut(s) 38, 179, 458
BsrI ACTGG 2 cut(s) 127, 490
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 2 cut(s) 125, 343
BssT1I CCWWGG 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 456, 462
BstDSI CCRYGG 1 cut(s) 43
BstKTI GATC 2 cut(s) 128, 346
BstMAI GTCTC 3 cut(s) 38, 179, 458
BstMBI GATC 2 cut(s) 125, 343
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 195
BstSFI CTRYAG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 300, 362
BtgI CCRYGG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 483
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 44
CviJI RGCY 9 cut(s) 71, 80, 138, 189, 300, 327, 362, 394, 431
CviKI_1 RGCY 9 cut(s) 71, 80, 138, 189, 300, 327, 362, 394, 431
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 456, 462
DpnI GATC 2 cut(s) 127, 345
DpnII GATC 2 cut(s) 125, 343
EaeI YGGCCR 1 cut(s) 298
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 43
Eco31I GGTCTC 3 cut(s) 38, 179, 458
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 47
FaiI YATR 2 cut(s) 14, 45
FatI CATG 1 cut(s) 43
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 190
FspBI CTAG 3 cut(s) 183, 257, 428
GluI GCNGC 1 cut(s) 190
GsaI CCCAGC 1 cut(s) 394
HaeIII GGCC 2 cut(s) 300, 362
Hin1II CATG 1 cut(s) 47
HindIII AAGCTT 2 cut(s) 69, 325
HinfI GANTC 2 cut(s) 356, 479
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 4 cut(s) 241, 289, 351, 463
Hpy188III TCNNGA 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 52, 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 195
HpyF3I CTNAG 2 cut(s) 456, 462
Hsp92II CATG 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 125, 343
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 6 cut(s) 38, 61, 108, 178, 404, 471
Lsp1109I GCAGC 1 cut(s) 176
MaeI CTAG 3 cut(s) 183, 257, 428
MaeIII GTNAC 3 cut(s) 118, 164, 269
MalI GATC 2 cut(s) 127, 345
MboI GATC 2 cut(s) 125, 343
MboII GAAGA 1 cut(s) 441
MfeI CAATTG 1 cut(s) 248
MluCI AATT 2 cut(s) 248, 405
MlyI GAGTC 1 cut(s) 350
MseI TTAA 2 cut(s) 264, 321
MunI CAATTG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 54
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 195
NcoI CCATGG 1 cut(s) 43
NdeII GATC 2 cut(s) 125, 343
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 118
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 479
PkrI GCNGC 1 cut(s) 191
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 390
PspN4I GGNNCC 1 cut(s) 88
PstI CTGCAG 1 cut(s) 194
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SaqAI TTAA 2 cut(s) 264, 321
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 2 cut(s) 125, 343
SchI GAGTC 1 cut(s) 350
SetI ASST 8 cut(s) 34, 73, 100, 175, 329, 339, 433, 470
SfcI CTRYAG 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 2 cut(s) 248, 405
SsiI CCGC 3 cut(s) 57, 198, 387
SspMI CTAG 3 cut(s) 183, 257, 428
StyI CCWWGG 1 cut(s) 43
TasI AATT 2 cut(s) 248, 405
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 2 cut(s) 264, 321
Tru9I TTAA 2 cut(s) 264, 321
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 248, 441
TspRI CASTG 1 cut(s) 490
XspI CTAG 3 cut(s) 183, 257, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.