Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017972

Physical Location & Seq

Genomic Coordinates Forward (+)

9422174 .. 9424011

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47163

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCCAGAAAAAGCTGGAGAACCGCTGGAGCTGTCGAAGCTTGTCGGCGTCGATTCTCTCTCTCTCTCTCTCTAAATCTTTCTGGGTTCGGAGCTTTTAGGGTTTTAGAGAAAGACCCAAATGAGAAACGAGAAATTGAGGACCGATCAAGAACTGGGCTGCACGATTTTACTAGGGCTTCAAGAAAGGCTGAAGAATCAGCATCAAGGCGATTACAAGCTGTTGAGTGGCTTGAAAGCTTTGTGGAGAAGGAGTTCATTCCTTGCCTGAGAAATGATCTCATCCTATGCAATGCCATAAACAAGATTCAACCCGAATCAGTGCCTAGGGTAGTTCTTCAATTTCTATCCCCAGATTATTGGACTTCCCCCTCTGTTTCGTTAATAATTAATGAGAAGAAACAAAGAAAGAAAGTACAAGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

142

Amino Acids

16.42

Weight (kDa)

9.81

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017972)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27260 FvH4_1g27361 FvH4_2g36070 FvH4_3g27460 FvH4_5g28560 FvH4_5g29240
rosa_chinensis	RchiOBHm_Chr2g0096731 RchiOBHm_Chr7g0235231
rosa_multiflora	Rmu_co8237525.1_g000001 Rmu_sc0032369.1_g000004
rosa_samantha	Rh3BG364300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	1 cut(s)	417
AgsI	TTSAA	4 cut(s)	183, 236, 311, 341
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	6 cut(s)	15, 32, 41, 95, 221, 240
AluI	AGCT	6 cut(s)	15, 32, 41, 95, 221, 240
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	160
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	254
AspA2I	CCTAGG	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
AvrII	CCTAGG	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	147
BfaI	CTAG	2 cut(s)	174, 327
BisI	GCNGC	1 cut(s)	161
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	165
BpmI	CTGGAG	2 cut(s)	37, 48
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	146, 277
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	2 cut(s)	146, 277
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	326
BstACI	GRCGYC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	2 cut(s)	149, 280
BstMBI	GATC	2 cut(s)	146, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	142
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	416
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	148, 279
DpnII	GATC	2 cut(s)	146, 277
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaiI	YATR	3 cut(s)	289, 299, 427
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	2 cut(s)	174, 327
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	2 cut(s)	37, 48
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	49
HindIII	AAGCTT	2 cut(s)	39, 238
HinfI	GANTC	4 cut(s)	54, 197, 307, 317
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	2 cut(s)	150, 183
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	163, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	269
Hsp92I	GRCGYC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	146, 277
LmnI	GCTCC	2 cut(s)	29, 92
LpnPI	CCDG	6 cut(s)	12, 19, 69, 141, 281, 366
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	174, 327
MalI	GATC	2 cut(s)	148, 279
MboI	GATC	2 cut(s)	146, 277
MboII	GAAGA	3 cut(s)	206, 329, 409
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	135, 341, 387
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	133, 382
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	383, 390
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	2 cut(s)	146, 277
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	4 cut(s)	54, 197, 307, 317
PkrI	GCNGC	1 cut(s)	162
PshBI	ATTAAT	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	383, 390
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	146, 277
Sau96I	GGNCC	1 cut(s)	142
SetI	ASST	6 cut(s)	17, 34, 43, 97, 223, 242
SfaNI	GCATC	1 cut(s)	212
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	3 cut(s)	135, 341, 387
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	174, 327
StyI	CCWWGG	1 cut(s)	326
TaqI	TCGA	2 cut(s)	36, 52
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	3 cut(s)	135, 341, 387
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	4 cut(s)	54, 197, 307, 317
Tru1I	TTAA	2 cut(s)	383, 390
Tru9I	TTAA	2 cut(s)	383, 390
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	142
VspI	ATTAAT	1 cut(s)	390
XmaJI	CCTAGG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	174, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.