Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8237525.1

Orthogroup ID

OG0017972

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 736

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8237525.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggaggaccgatcaagaactgggttgcacgattttactagggcttcaagaaaggctgaagaatcagcctggaggcgatttcaagcagttgagtggcttgagagctttgtgggtccacttggcataccgaaccagccatcggagaaggagttcatttcttgcctgagaaatggtctcatcctatgcaacgccataaacaagattcaacccggatcagtgcccagggtggtggagagccaaatgcctttacaatcactaagcagggaatctcaaccactgcctgcatatcagtactttgagaatgtccgaaactttctggttgctgctgaagagttaaagctgcctgcttttgaagcctctgaccttgaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

124

Amino Acids

14.17

Weight (kDa)

5.49

Isoelectric Point (pI)

65.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017972)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27260 FvH4_1g27361 FvH4_2g36070 FvH4_3g27460 FvH4_5g28560 FvH4_5g29240
rosa_chinensis	RchiOBHm_Chr2g0096731 RchiOBHm_Chr7g0235231
rosa_multiflora	Rmu_co8237525.1_g000001 Rmu_sc0032369.1_g000004
rosa_samantha	Rh3BG364300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	78, 348
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	5 cut(s)	48, 83, 206, 353, 368
AjnI	CCWGG	2 cut(s)	68, 221
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	2 cut(s)	105, 340
AluI	AGCT	2 cut(s)	105, 340
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	323, 340
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	7, 113
AsuC2I	CCSGG	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	7, 113
BaeGI	GKGCMC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	310, 327
BccI	CCATC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	70, 223
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	2 cut(s)	324, 341
BlsI	GCNGC	2 cut(s)	325, 342
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	3 cut(s)	70, 210, 223
Bme18I	GGWCC	2 cut(s)	7, 113
BmgT120I	GGNCC	2 cut(s)	7, 113
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	3 cut(s)	70, 210, 223
BmrI	ACTGGG	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	221, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	70, 223
BseDI	CCNNGG	2 cut(s)	221, 222
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	310, 327
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	11, 212
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	221, 222
BssMI	GATC	2 cut(s)	11, 212
Bst2UI	CCWGG	2 cut(s)	70, 223
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	282, 345
BstDEI	CTNAG	2 cut(s)	164, 257
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	14, 215
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	2 cut(s)	11, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	70, 223
BstSCI	CCNGG	3 cut(s)	68, 208, 221
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	310, 327
BstXI	CCANNNNNNTGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	222, 275
Cac8I	GCNNGC	2 cut(s)	282, 345
Cfr13I	GGNCC	2 cut(s)	7, 113
Csp6I	GTAC	1 cut(s)	292
CviJI	RGCY	9 cut(s)	44, 56, 68, 97, 105, 136, 237, 340, 356
CviKI_1	RGCY	9 cut(s)	44, 56, 68, 97, 105, 136, 237, 340, 356
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	2 cut(s)	164, 257
DpnI	GATC	2 cut(s)	13, 214
DpnII	GATC	2 cut(s)	11, 212
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	7, 113
Eco57I	CTGAAG	2 cut(s)	78, 348
EcoRII	CCWGG	2 cut(s)	68, 221
FaiI	YATR	4 cut(s)	125, 184, 194, 286
Fnu4HI	GCNGC	2 cut(s)	324, 341
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	324, 341
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	2 cut(s)	324, 341
GsuI	CTGGAG	1 cut(s)	91
HapII	CCGG	1 cut(s)	210
HinfI	GANTC	3 cut(s)	62, 202, 266
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	142, 308, 361
Hpy188III	TCNNGA	2 cut(s)	15, 48
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	28, 186, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	164, 257
Kzo9I	GATC	2 cut(s)	11, 212
Lsp1109I	GCAGC	2 cut(s)	310, 327
MaeI	CTAG	1 cut(s)	39
MalI	GATC	2 cut(s)	13, 214
MboI	GATC	2 cut(s)	11, 212
MboII	GAAGA	2 cut(s)	71, 341
MhlI	GDGCHC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	66, 367
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	1 cut(s)	335
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	3 cut(s)	70, 210, 223
MvaI	CCWGG	2 cut(s)	70, 223
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	11, 212
NlaIV	GGNNCC	1 cut(s)	114
PasI	CCCWGGG	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	62, 202, 266
PkrI	GCNGC	2 cut(s)	325, 342
Psp6I	CCWGG	2 cut(s)	68, 221
PspGI	CCWGG	2 cut(s)	68, 221
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	7, 113
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	2 cut(s)	324, 341
Sau3AI	GATC	2 cut(s)	11, 212
Sau96I	GGNCC	2 cut(s)	7, 113
ScaI	AGTACT	1 cut(s)	293
ScrFI	CCNGG	3 cut(s)	70, 210, 223
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	3 cut(s)	107, 342, 366
SinI	GGWCC	2 cut(s)	7, 113
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	3 cut(s)	68, 208, 221
TaqII	GACCGA	1 cut(s)	24
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	62, 202, 266
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	222, 282
TseI	GCWGC	2 cut(s)	323, 340
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	2 cut(s)	222, 282
VpaK11BI	GGWCC	2 cut(s)	7, 113
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.