FvH4_1g27361

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017972
Physical Location & Seq
Forward (+)
19091313 .. 19093078
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27361.t1

Sequence Viewer

Length: 501 bp
ATGTTGATCTGCAGGAAATCCCTACGGTTTGGCATTCTAAGCATCAGTTTCTGGCTGAAATTTGGTTTATATTGGGTAGGTCTCAAATCAGGTTGTAGTCAAGGTTACTGTGATTTTGTTGGTCAGGGAGAGGGAGAGCGAGAGGGTGAGGGGCAGAGAGACAGAGTTTCCAGCGTGATATCGAGAGGGGGAGGAACTGGGGGACTAGAGGTCTCCCTCTCCACCGCTTCATTTTCTATGTTTGAAGCTTCCATAGCATTCTGGATAGTGTGTGAATTGTGGTCTTTGAGTACTGGTGTGAACTGTATAGGCTCTTCTTGGGGGTTGTCGGCTATTGGTGCCATTGAAGGTATCAGCAAGTTTGTGACTGGATCACTTATCAGCCTCTTTGAACAAGAGTTGATGGATTGTAACAAAGGTCTCACAACTAGAGGCTGCAGGGGCGGACAATTAATCAGATGGTGGCATCTCTCTCCGAGTCTAGATGAGCTGCTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004842 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009888 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010494 GO:0010498 GO:0010605 GO:0016020 GO:0016049 GO:0016567 GO:0016740 GO:0016787 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030163 GO:0031146 GO:0031224 GO:0031225 GO:0031347 GO:0031348 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0035770 GO:0036211 GO:0036464 GO:0040007 GO:0042176 GO:0042177 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0060255 GO:0060560 GO:0065007 GO:0070011 GO:0070647 GO:0071695 GO:0071704 GO:0080090 GO:0080134 GO:0080147 GO:0090558 GO:0090627 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

167

Amino Acids

18.04

Weight (kDa)

5.85

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 101 - 155 3e-09 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AciI CCGC 2 cut(s) 225, 444
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 1 cut(s) 292
AgsI TTSAA 3 cut(s) 245, 347, 392
AhdI GACNNNNNGTC 1 cut(s) 209
AluBI AGCT 2 cut(s) 248, 490
AluI AGCT 2 cut(s) 248, 490
Alw26I GTCTC 4 cut(s) 86, 153, 217, 425
AlwI GGATC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 435, 490
ApoI RAATTY 1 cut(s) 59
AseI ATTAAT 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 158
BanI GGYRCC 1 cut(s) 338
BarI GAAGNNNNNNTAC 2 cut(s) 298, 330
BbvI GCAGC 2 cut(s) 422, 477
BccI CCATC 2 cut(s) 397, 453
BcoDI GTCTC 4 cut(s) 86, 153, 217, 425
BfaI CTAG 3 cut(s) 206, 429, 482
BfmI CTRYAG 2 cut(s) 10, 436
BisI GCNGC 2 cut(s) 436, 491
BlsI GCNGC 2 cut(s) 437, 492
BmcAI AGTACT 1 cut(s) 292
BmeRI GACNNNNNGTC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 340
BmrI ACTGGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 51, 475
BmuI ACTGGG 1 cut(s) 207
BsaI GGTCTC 3 cut(s) 86, 217, 425
Bse1I ACTGG 3 cut(s) 202, 298, 373
BseNI ACTGG 3 cut(s) 202, 298, 373
BseXI GCAGC 2 cut(s) 422, 477
BshNI GGYRCC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 4 cut(s) 86, 153, 217, 425
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 2 cut(s) 33, 257
Bso31I GGTCTC 3 cut(s) 86, 217, 425
Bsp143I GATC 2 cut(s) 6, 371
BspACI CCGC 2 cut(s) 225, 444
BspLI GGNNCC 1 cut(s) 340
BspMAI CTGCAG 2 cut(s) 14, 440
BspPI GGATC 1 cut(s) 379
BspQI GCTCTTC 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 338
BspTNI GGTCTC 3 cut(s) 86, 217, 425
BsrI ACTGG 3 cut(s) 202, 298, 373
BssMI GATC 2 cut(s) 6, 371
Bst4CI ACNGT 3 cut(s) 27, 110, 305
Bst6I CTCTTC 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 38
BstKTI GATC 2 cut(s) 9, 374
BstMAI GTCTC 4 cut(s) 86, 153, 217, 425
BstMBI GATC 2 cut(s) 6, 371
BstMWI GCNNNNNNNGC 4 cut(s) 39, 254, 338, 441
BstSFI CTRYAG 2 cut(s) 10, 436
BstV1I GCAGC 2 cut(s) 422, 477
CaiI CAGNNNCTG 1 cut(s) 51
Csp6I GTAC 1 cut(s) 291
CviJI RGCY 7 cut(s) 55, 248, 312, 332, 384, 435, 490
CviKI_1 RGCY 7 cut(s) 55, 248, 312, 332, 384, 435, 490
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 1 cut(s) 38
DpnI GATC 2 cut(s) 8, 373
DpnII GATC 2 cut(s) 6, 371
DriI GACNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 319
Eam1105I GACNNNNNGTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 319
EciI GGCGGA 1 cut(s) 459
Eco31I GGTCTC 3 cut(s) 86, 217, 425
Eco32I GATATC 1 cut(s) 180
EcoRV GATATC 1 cut(s) 180
FaiI YATR 4 cut(s) 70, 239, 254, 308
FaqI GGGAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 436, 491
Fsp4HI GCNGC 2 cut(s) 436, 491
FspBI CTAG 3 cut(s) 206, 429, 482
GluI GCNGC 2 cut(s) 436, 491
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 1 cut(s) 478
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 458, 477
Hpy188III TCNNGA 3 cut(s) 183, 262, 482
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 3 cut(s) 27, 110, 305
HpyCH4V TGCA 2 cut(s) 12, 438
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 254, 338, 441
HpyF3I CTNAG 1 cut(s) 38
Kzo9I GATC 2 cut(s) 6, 371
LguI GCTCTTC 1 cut(s) 319
LpnPI CCDG 9 cut(s) 37, 75, 110, 183, 184, 247, 279, 354, 424
Lsp1109I GCAGC 2 cut(s) 422, 477
LweI GCATC 2 cut(s) 51, 475
MaeI CTAG 3 cut(s) 206, 429, 482
MaeIII GTNAC 3 cut(s) 104, 364, 410
MalI GATC 2 cut(s) 8, 373
MboI GATC 2 cut(s) 6, 371
MboII GAAGA 1 cut(s) 306
MluCI AATT 3 cut(s) 59, 275, 449
MlyI GAGTC 1 cut(s) 487
MnlI CCTC 9 cut(s) 124, 136, 142, 179, 185, 202, 227, 395, 425
MseI TTAA 1 cut(s) 452
Mva1269I GAATGC 2 cut(s) 33, 257
MwoI GCNNNNNNNGC 4 cut(s) 39, 254, 338, 441
NdeII GATC 2 cut(s) 6, 371
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 319
PctI GAATGC 2 cut(s) 33, 257
PkrI GCNGC 2 cut(s) 437, 492
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 340
PstI CTGCAG 2 cut(s) 14, 440
PstNI CAGNNNCTG 1 cut(s) 51
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 2 cut(s) 436, 491
Sau3AI GATC 2 cut(s) 6, 371
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 487
SetI ASST 8 cut(s) 82, 94, 106, 213, 250, 352, 421, 492
SfaNI GCATC 2 cut(s) 51, 475
SfcI CTRYAG 2 cut(s) 10, 436
Sse9I AATT 3 cut(s) 59, 275, 449
SsiI CCGC 2 cut(s) 225, 444
SspMI CTAG 3 cut(s) 206, 429, 482
TaaI ACNGT 3 cut(s) 27, 110, 305
TaqI TCGA 1 cut(s) 182
TasI AATT 3 cut(s) 59, 275, 449
TatI WGTACW 1 cut(s) 290
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 2 cut(s) 435, 490
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 219
VspI ATTAAT 1 cut(s) 452
XapI RAATTY 1 cut(s) 59
XbaI TCTAGA 1 cut(s) 481
XspI CTAG 3 cut(s) 206, 429, 482
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.