Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032369.1

Orthogroup ID

OG0017972

Physical Location & Seq

Genomic Coordinates Forward (+)

9833 .. 11429

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032369.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgcccaaacccgagacccagagttctaggcgatcccgtccgtcgcctttgagagaacggaagcgagtgatggaggaccgatcaagaactgggttgcacgattttactagggcttcaagaaaggctgaagaatcagcctggaggcgatttcaagcagttgagtggcttgagagctttgtgggtccacttggcataccgaaccagccatcggagaaggacttcatttcttgcctgagaaatggtctcatcctatgcaacgccataaacaagattcaacccggatcagtgcccagggtggtggagagccaaatgcctttacaatcactaagcagggaatctcaaccactgcctgcatatcagtactttgagaatgtccgaaactttctggttgctgctgaagagttaaagctgcctgcttttgaagcctctgaccttgaaagggatacattggaggcagggtctgcagggaaggtcgttgattgtgttttagcccttagatcctataatgagtggaagcagatgagcaatgggaatggatgttataaacatataaaatctcccttagttatgcattctgccaatagaatgcattcaagacccccagctatggtctcctcgcactcttgcaggaacttggatatgtctgctggacttgatagacaactatcgatcgaggatgacaaacagaaacatgaaggttttattgtttttttttcctttattttatccatccatgtatttcaacttatgcttactctcatccacagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

256

Amino Acids

29.23

Weight (kDa)

9.16

Isoelectric Point (pI)

72.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017972)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27260 FvH4_1g27361 FvH4_2g36070 FvH4_3g27460 FvH4_5g28560 FvH4_5g29240
rosa_chinensis	RchiOBHm_Chr2g0096731 RchiOBHm_Chr7g0235231
rosa_multiflora	Rmu_co8237525.1_g000001 Rmu_sc0032369.1_g000004
rosa_samantha	Rh3BG364300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AclWI	GGATC	3 cut(s)	27, 289, 492
AcuI	CTGAAG	2 cut(s)	147, 417
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	208, 439, 607
AgsI	TTSAA	7 cut(s)	117, 152, 275, 422, 437, 594, 743
AjnI	CCWGG	2 cut(s)	137, 290
AluBI	AGCT	3 cut(s)	174, 409, 605
AluI	AGCT	3 cut(s)	174, 409, 605
Alw26I	GTCTC	3 cut(s)	8, 248, 616
AlwI	GGATC	3 cut(s)	27, 289, 492
AlwNI	CAGNNNCTG	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	392, 409
Asp700I	GAANNNNTTC	2 cut(s)	218, 589
AspS9I	GGNCC	2 cut(s)	76, 182
AsuC2I	CCSGG	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	76, 182
BaeGI	GKGCMC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	379, 396
BccI	CCATC	3 cut(s)	64, 214, 737
BciT130I	CCWGG	2 cut(s)	139, 292
BciVI	GTATCC	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	3 cut(s)	8, 248, 616
BfaI	CTAG	2 cut(s)	27, 108
BfmI	CTRYAG	1 cut(s)	462
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	2 cut(s)	393, 410
BlsI	GCNGC	2 cut(s)	394, 411
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	3 cut(s)	139, 279, 292
Bme18I	GGWCC	2 cut(s)	76, 182
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	76, 182
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	3 cut(s)	139, 279, 292
BmrI	ACTGGG	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	668
BsaI	GGTCTC	3 cut(s)	8, 248, 616
BsaJI	CCNNGG	2 cut(s)	290, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 439, 607
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	139, 292
BseCI	ATCGAT	1 cut(s)	668
BseDI	CCNNGG	2 cut(s)	290, 291
BseGI	GGATG	5 cut(s)	246, 542, 682, 729, 759
BseLI	CCNNNNNNNGG	3 cut(s)	208, 439, 607
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	604
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	379, 396
BseYI	CCCAGC	1 cut(s)	601
Bsh1285I	CGRYCG	1 cut(s)	672
BshVI	ATCGAT	1 cut(s)	668
BsiEI	CGRYCG	1 cut(s)	672
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	208, 439, 607
BsmAI	GTCTC	3 cut(s)	8, 248, 616
BsmI	GAATGC	3 cut(s)	571, 589, 591
Bso31I	GGTCTC	3 cut(s)	8, 248, 616
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	5 cut(s)	32, 80, 281, 497, 669
BspCNI	CTCAG	1 cut(s)	225
BspDI	ATCGAT	1 cut(s)	668
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	3 cut(s)	27, 289, 492
BspTNI	GGTCTC	3 cut(s)	8, 248, 616
BsrDI	GCAATG	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	290, 291
BssMI	GATC	5 cut(s)	32, 80, 281, 497, 669
Bst2UI	CCWGG	2 cut(s)	139, 292
Bst6I	CTCTTC	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	351, 414
BstDEI	CTNAG	4 cut(s)	233, 326, 494, 562
BstF5I	GGATG	5 cut(s)	246, 542, 682, 729, 759
BstKTI	GATC	5 cut(s)	35, 83, 284, 500, 672
BstMAI	GTCTC	3 cut(s)	8, 248, 616
BstMBI	GATC	5 cut(s)	32, 80, 281, 497, 669
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 461
BstNI	CCWGG	2 cut(s)	139, 292
BstSCI	CCNGG	3 cut(s)	137, 277, 290
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	379, 396
BstX2I	RGATCY	1 cut(s)	497
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	497
Bsu15I	ATCGAT	1 cut(s)	668
BsuI	GTATCC	1 cut(s)	436
BsuTUI	ATCGAT	1 cut(s)	668
BtsCI	GGATG	5 cut(s)	246, 542, 682, 729, 759
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	291, 344
Cac8I	GCNNGC	2 cut(s)	351, 414
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	76, 182
ClaI	ATCGAT	1 cut(s)	668
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	692, 734
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	4 cut(s)	233, 326, 494, 562
DpnI	GATC	5 cut(s)	34, 82, 283, 499, 671
DpnII	GATC	5 cut(s)	32, 80, 281, 497, 669
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco31I	GGTCTC	3 cut(s)	8, 248, 616
Eco47I	GGWCC	2 cut(s)	76, 182
Eco57I	CTGAAG	2 cut(s)	147, 417
Eco88I	CYCGRG	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	137, 290
EcoT22I	ATGCAT	2 cut(s)	573, 591
FaeI	CATG	2 cut(s)	695, 737
FatI	CATG	2 cut(s)	691, 733
Fnu4HI	GCNGC	2 cut(s)	393, 410
FokI	GGATG	5 cut(s)	233, 549, 689, 716, 746
Fsp4HI	GCNGC	2 cut(s)	393, 410
FspBI	CTAG	2 cut(s)	27, 108
GluI	GCNGC	2 cut(s)	393, 410
GsaI	CCCAGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	160
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	2 cut(s)	695, 737
HinfI	GANTC	3 cut(s)	131, 271, 335
HpaII	CCGG	1 cut(s)	279
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	3 cut(s)	211, 377, 430
Hpy188III	TCNNGA	3 cut(s)	84, 117, 594
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	208, 463, 689
HpyCH4V	TGCA	7 cut(s)	97, 255, 353, 464, 571, 589, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 461
HpyF3I	CTNAG	4 cut(s)	233, 326, 494, 562
Hsp92II	CATG	2 cut(s)	695, 737
Kzo9I	GATC	5 cut(s)	32, 80, 281, 497, 669
Lsp1109I	GCAGC	2 cut(s)	379, 396
MaeI	CTAG	2 cut(s)	27, 108
MalI	GATC	5 cut(s)	34, 82, 283, 499, 671
MboI	GATC	5 cut(s)	32, 80, 281, 497, 669
MboII	GAAGA	2 cut(s)	140, 410
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	1 cut(s)	291
MnlI	CCTC	6 cut(s)	67, 135, 436, 445, 625, 667
Mph1103I	ATGCAT	2 cut(s)	573, 591
MroXI	GAANNNNTTC	2 cut(s)	218, 589
MseI	TTAA	1 cut(s)	404
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	3 cut(s)	139, 279, 292
Mva1269I	GAATGC	3 cut(s)	571, 589, 591
MvaI	CCWGG	2 cut(s)	139, 292
MwoI	GCNNNNNNNGC	2 cut(s)	422, 461
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	5 cut(s)	32, 80, 281, 497, 669
NlaIII	CATG	2 cut(s)	695, 737
NlaIV	GGNNCC	1 cut(s)	183
NsiI	ATGCAT	2 cut(s)	573, 591
PasI	CCCWGGG	1 cut(s)	291
PctI	GAATGC	3 cut(s)	571, 589, 591
PdmI	GAANNNNTTC	2 cut(s)	218, 589
PfeI	GAWTC	3 cut(s)	131, 271, 335
PkrI	GCNGC	2 cut(s)	394, 411
Ple19I	CGATCG	1 cut(s)	672
PsiI	TTATAA	1 cut(s)	543
Psp6I	CCWGG	2 cut(s)	137, 290
PspFI	CCCAGC	1 cut(s)	601
PspGI	CCWGG	2 cut(s)	137, 290
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	76, 182
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	497
PvuI	CGATCG	1 cut(s)	672
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	2 cut(s)	393, 410
Sau3AI	GATC	5 cut(s)	32, 80, 281, 497, 669
Sau96I	GGNCC	2 cut(s)	76, 182
ScaI	AGTACT	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	139, 279, 292
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	6 cut(s)	176, 411, 435, 474, 607, 700
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	2 cut(s)	76, 182
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SspMI	CTAG	2 cut(s)	27, 108
StyD4I	CCNGG	3 cut(s)	137, 277, 290
TaqI	TCGA	2 cut(s)	668, 672
TaqII	GACCGA	1 cut(s)	93
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	3 cut(s)	131, 271, 335
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	291, 351
TseI	GCWGC	2 cut(s)	392, 409
TspDTI	ATGAA	2 cut(s)	211, 708
TspGWI	ACGGA	2 cut(s)	30, 73
TspRI	CASTG	2 cut(s)	291, 351
VpaK11BI	GGWCC	2 cut(s)	76, 182
XmnI	GAANNNNTTC	2 cut(s)	218, 589
XspI	CTAG	2 cut(s)	27, 108
ZrmI	AGTACT	1 cut(s)	362
Zsp2I	ATGCAT	2 cut(s)	573, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.