Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017972

Physical Location & Seq

Genomic Coordinates Reverse (-)

19706438 .. 19711706

Gene Structure 5269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGCCTAGGTATATTGGGTCTGTGTTTTGGGCCTGTCGCTCTTGCCACCGCGTCTCTTGCTTCTATTTTCTTCGTCTTCGTCAGAGGAACTAAAACTCATCGAAAACAACGCAAGAGAGAGAGACTGAAAGAGAGAGGGAGAGCAGAGCAAAGCAAAGCAAGACGATCGTTCTTTAGAAGGTGTTTGAGGTTTGATTTCGCCGATCACTTTTATTGCGGGTTTGGGTTTCAATCAAGCATCAAAGGTCTTTGGCGAATTCAGGATAAGGTGCGGCTCATAGAACAGAGCAATGCAAAGCATCTTCCAATCACAAGTGAGGCTTATTCTTCCCTGAGAGCATTCAAAAGAGAAGATCTTTGGTGTAGTGCGCGCTTTATAAAGGGTAATCAAGAGGATAATGCTAAGATATTAGTAGAAGAAAGCGGTAACAAGGGTGGTGAACATCTTTGGCCGGAAGTTATAGGTGCTTGGAGGTCAGGCACTGAGCTATGTTGCCTCAAGACTAGAAGATTCAAGGTTGAGTTGACGATAAGGTTGATGAACACAATGGGTAGTGTCAAGAAGGAAATGCGCTGGAAGATAAAAAAAAATCTTGGAAATGCTTGGCTGGAATTGTATGAATTATCTGGTTTAGAAAAGAACAGAAGAAAAAAAAAAAAAAAAATTCTGATCCTTCAAAAAGTTTCACAATTGCAAAGGGAAAGGTGTACTGATCTTATTGAGGCAGCAAAACCGCTTAGGAAATCCCTACGGTTTGGCATTCTAAATATCAGTTTCGGGCTGAAATTTGGTTTATATTGGGCGGGTCTCAAATCAGGAGTAGAGGAGGGAGATTGGGTTTCGGTGGAGGGAGAGGGAGAGGCAGAGAGACAGAGTTTCCGGCGGGATGTCAAGAGGGGGAGGAACTGGGGGACTAGAGGTAGGGAGCATGAGATGGAGTATGGTGATGTCTCCCTCTCCACCTCTTCATTTTCTATGTTTGAAGCTTCCATAGCATTCTGGATAGTGTCTGAATTGTGGTCTTTGAGGTCATTTGATCAAATAGGAATATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

354

Amino Acids

40.81

Weight (kDa)

10.01

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017972)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27260 FvH4_1g27361 FvH4_2g36070 FvH4_3g27460 FvH4_5g28560 FvH4_5g29240
rosa_chinensis	RchiOBHm_Chr2g0096731 RchiOBHm_Chr7g0235231
rosa_multiflora	Rmu_co8237525.1_g000001 Rmu_sc0032369.1_g000004
rosa_samantha	Rh3BG364300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccII	CGCG	2 cut(s)	53, 373
AciI	CCGC	7 cut(s)	51, 219, 274, 426, 737, 806, 886
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	3 cut(s)	258, 666, 788
AfaI	GTAC	1 cut(s)	712
AgsI	TTSAA	5 cut(s)	233, 346, 517, 680, 986
AluBI	AGCT	2 cut(s)	490, 989
AluI	AGCT	2 cut(s)	490, 989
Alw26I	GTCTC	5 cut(s)	60, 118, 815, 865, 958
AlwI	GGATC	1 cut(s)	667
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	3 cut(s)	4, 32, 452
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	3 cut(s)	258, 666, 788
AspA2I	CCTAGG	1 cut(s)	7
AspLEI	GCGC	3 cut(s)	373, 375, 576
AspS9I	GGNCC	2 cut(s)	4, 32
AsuHPI	GGTGA	2 cut(s)	452, 959
AvrII	CCTAGG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	1 cut(s)	931
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BclI	TGATCA	1 cut(s)	1039
BcoDI	GTCTC	5 cut(s)	60, 118, 815, 865, 958
BfaI	CTAG	3 cut(s)	8, 507, 918
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	2 cut(s)	275, 729
BlnI	CCTAGG	1 cut(s)	7
BlsI	GCNGC	2 cut(s)	276, 730
BmgT120I	GGNCC	2 cut(s)	4, 32
BmrI	ACTGGG	1 cut(s)	919
BmsI	GCATC	2 cut(s)	249, 310
BmuI	ACTGGG	1 cut(s)	919
BpiI	GAAGAC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	815
BsaJI	CCNNGG	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bse1I	ACTGG	1 cut(s)	914
Bse3DI	GCAATG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	895
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	326, 477
BseNI	ACTGG	1 cut(s)	914
BsePI	GCGCGC	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	842
BseXI	GCAGC	1 cut(s)	740
Bsh1236I	CGCG	2 cut(s)	53, 373
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	3 cut(s)	6, 34, 454
BsiEI	CGRYCG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	455, 883
BslFI	GGGAC	1 cut(s)	928
BsmAI	GTCTC	5 cut(s)	60, 118, 815, 865, 958
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	928
BsmI	GAATGC	3 cut(s)	341, 762, 998
BsnI	GGCC	3 cut(s)	6, 34, 454
Bso31I	GGTCTC	1 cut(s)	815
Bsp143I	GATC	6 cut(s)	167, 205, 355, 672, 715, 1039
BspACI	CCGC	7 cut(s)	51, 219, 274, 426, 737, 806, 886
BspANI	GGCC	3 cut(s)	6, 34, 454
BspCNI	CTCAG	2 cut(s)	327, 478
BspFNI	CGCG	2 cut(s)	53, 373
BspPI	GGATC	1 cut(s)	667
BspTNI	GGTCTC	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	914
BssECI	CCNNGG	1 cut(s)	7
BssHII	GCGCGC	1 cut(s)	371
BssMI	GATC	6 cut(s)	167, 205, 355, 672, 715, 1039
BssT1I	CCWWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	756
Bst6I	CTCTTC	1 cut(s)	973
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	4 cut(s)	335, 405, 486, 740
BstF5I	GGATG	1 cut(s)	895
BstFNI	CGCG	2 cut(s)	53, 373
BstHHI	GCGC	3 cut(s)	373, 375, 576
BstKTI	GATC	6 cut(s)	170, 208, 358, 675, 718, 1042
BstMAI	GTCTC	5 cut(s)	60, 118, 815, 865, 958
BstMBI	GATC	6 cut(s)	167, 205, 355, 672, 715, 1039
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 995
BstUI	CGCG	2 cut(s)	53, 373
BstV1I	GCAGC	1 cut(s)	740
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	6, 34, 454
BtsCI	GGATG	1 cut(s)	895
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	373
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	3 cut(s)	373, 375, 576
Cfr13I	GGNCC	2 cut(s)	4, 32
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	1 cut(s)	932
CviJI	RGCY	9 cut(s)	6, 34, 277, 323, 454, 490, 610, 784, 989
CviKI_1	RGCY	9 cut(s)	6, 34, 277, 323, 454, 490, 610, 784, 989
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	4 cut(s)	335, 405, 486, 740
DpnI	GATC	6 cut(s)	169, 207, 357, 674, 717, 1041
DpnII	GATC	6 cut(s)	167, 205, 355, 672, 715, 1039
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	973
EarI	CTCTTC	1 cut(s)	973
Eco130I	CCWWGG	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	815
EcoRI	GAATTC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	1 cut(s)	935
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	1 cut(s)	928
FatI	CATG	1 cut(s)	931
FauI	CCCGC	3 cut(s)	212, 799, 879
FbaI	TGATCA	1 cut(s)	1039
Fnu4HI	GCNGC	2 cut(s)	275, 729
FokI	GGATG	1 cut(s)	902
Fsp4HI	GCNGC	2 cut(s)	275, 729
FspBI	CTAG	3 cut(s)	8, 507, 918
GlaI	GCGC	3 cut(s)	372, 374, 575
GluI	GCNGC	2 cut(s)	275, 729
HaeIII	GGCC	3 cut(s)	6, 34, 454
HapII	CCGG	2 cut(s)	455, 883
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	3 cut(s)	373, 375, 576
Hin1II	CATG	1 cut(s)	935
Hin6I	GCGC	3 cut(s)	371, 373, 574
HinP1I	GCGC	3 cut(s)	371, 373, 574
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	987
HinfI	GANTC	1 cut(s)	513
HpaII	CCGG	2 cut(s)	455, 883
HphI	GGTGA	2 cut(s)	452, 959
Hpy166II	GTNNAC	3 cut(s)	443, 528, 711
Hpy188I	TCNGA	4 cut(s)	86, 672, 1015, 1057
Hpy188III	TCNNGA	7 cut(s)	263, 392, 502, 562, 819, 895, 1003
Hpy8I	GTNNAC	3 cut(s)	443, 528, 711
HpyAV	CCTTC	3 cut(s)	174, 559, 686
HpyCH4III	ACNGT	1 cut(s)	756
HpyCH4V	TGCA	2 cut(s)	296, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 995
HpyF3I	CTNAG	4 cut(s)	335, 405, 486, 740
Hsp92II	CATG	1 cut(s)	935
HspAI	GCGC	3 cut(s)	371, 373, 574
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	6 cut(s)	167, 205, 355, 672, 715, 1039
LmnI	GCTCC	1 cut(s)	928
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	2 cut(s)	249, 310
MaeI	CTAG	3 cut(s)	8, 507, 918
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	6 cut(s)	169, 207, 357, 674, 717, 1041
MboI	GATC	6 cut(s)	167, 205, 355, 672, 715, 1039
MfeI	CAATTG	1 cut(s)	692
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	7 cut(s)	258, 614, 623, 666, 692, 788, 1016
MspI	CCGG	2 cut(s)	455, 883
MunI	CAATTG	1 cut(s)	692
Mva1269I	GAATGC	3 cut(s)	341, 762, 998
MvnI	CGCG	2 cut(s)	53, 373
MwoI	GCNNNNNNNGC	2 cut(s)	59, 995
NdeII	GATC	6 cut(s)	167, 205, 355, 672, 715, 1039
NlaIII	CATG	1 cut(s)	935
PauI	GCGCGC	1 cut(s)	371
PctI	GAATGC	3 cut(s)	341, 762, 998
PfeI	GAWTC	1 cut(s)	513
PkrI	GCNGC	2 cut(s)	276, 730
Ple19I	CGATCG	1 cut(s)	170
PsiI	TTATAA	1 cut(s)	380
PspPI	GGNCC	2 cut(s)	4, 32
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	355
PteI	GCGCGC	1 cut(s)	371
PvuI	CGATCG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
SatI	GCNGC	2 cut(s)	275, 729
Sau3AI	GATC	6 cut(s)	167, 205, 355, 672, 715, 1039
Sau96I	GGNCC	2 cut(s)	4, 32
SfaNI	GCATC	2 cut(s)	249, 310
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	7 cut(s)	258, 614, 623, 666, 692, 788, 1016
SsiI	CCGC	7 cut(s)	51, 219, 274, 426, 737, 806, 886
SspMI	CTAG	3 cut(s)	8, 507, 918
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	756
TaqI	TCGA	1 cut(s)	103
TasI	AATT	7 cut(s)	258, 614, 623, 666, 692, 788, 1016
TatI	WGTACW	1 cut(s)	710
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	513
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	1 cut(s)	728
TspDTI	ATGAA	3 cut(s)	557, 636, 960
TspRI	CASTG	1 cut(s)	490
XapI	RAATTY	3 cut(s)	258, 666, 788
XmaJI	CCTAGG	1 cut(s)	7
XspI	CTAG	3 cut(s)	8, 507, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.