FvH4_1g27780

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016741
Physical Location & Seq
Forward (+)
19373022 .. 19373342
321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27780.t1

Sequence Viewer

Length: 321 bp
ATGTCAGTTGTCAAATTCTACAATCGAACAGAGCAGGACTACTGTGTGAGCATTGACAAAGAAAACATCCCAGTTGCTTCCGTGGAGTCTACTTTGAAACAGAGTAAAGCTACTTCCCCAGATTCAGAATCAGAAGCATTAGTGTTACCTTTATCGGAGATTGACATCTCGTCTTTCCGGCGACCCGACTTAGATTCCGGTACCCTCTTCGACCCGGGCCTACTGGCCGCCTTTCGGCAAGCGGTGATTGAGTATATGAGATTGAGTGAAGACCCTCTCTTGGGCTTCCAAGAGAAACGTCCACCTGGGAGCTTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

107

Amino Acids

11.83

Weight (kDa)

4.51

Isoelectric Point (pI)

83.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016741)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27780 FvH4_1g27790 FvH4_7g05400
malus_domestica MD02G1258300.v1.1 MD07G1062500.v1.1
prunus_persica Prupe.2G073600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332071
rosa_laevigata RLG00000029694
rosa_roxburghii Rroxscaffold_4G00318400
rosa_rugosa Rorug01G0098200
rosa_samantha Rh1AG122100 Rh1BG093500 Rh1CG116700
rosa_wichuraiana Rw1G009950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 89
AciI CCGC 2 cut(s) 228, 242
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 3 cut(s) 234, 280, 281
AgsI TTSAA 1 cut(s) 97
AhdI GACNNNNNGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 2 cut(s) 110, 312
AluI AGCT 2 cut(s) 110, 312
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 2 cut(s) 217, 225
ApoI RAATTY 1 cut(s) 14
Asp718I GGTACC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 2 cut(s) 215, 216
AsuHPI GGTGA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 214
BanI GGYRCC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 97, 129
BbsI GAAGAC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 306
BcnI CCSGG 2 cut(s) 215, 216
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 3 cut(s) 215, 216, 306
BmeRI GACNNNNNGTC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 3 cut(s) 215, 216, 306
BmrI ACTGGG 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 276
BpuMI CCSGG 2 cut(s) 215, 216
BsaBI GATNNNNATC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 81, 214, 305
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 280, 281
Bse1I ACTGG 2 cut(s) 71, 228
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 81, 214, 305
BseGI GGATG 1 cut(s) 66
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 3 cut(s) 234, 280, 281
BseNI ACTGG 2 cut(s) 71, 228
BshFI GGCC 2 cut(s) 219, 227
BshNI GGYRCC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 3 cut(s) 178, 198, 215
BslI CCNNNNNNNGG 3 cut(s) 234, 280, 281
BsnI GGCC 2 cut(s) 219, 227
BsoBI CYCGRG 1 cut(s) 214
BspACI CCGC 2 cut(s) 228, 242
BspANI GGCC 2 cut(s) 219, 227
BspLI GGNNCC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 200
BsrI ACTGG 2 cut(s) 71, 228
BssECI CCNNGG 3 cut(s) 81, 214, 305
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 190
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 66
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 3 cut(s) 213, 214, 304
BstV2I GAAGAC 1 cut(s) 276
BsuRI GGCC 2 cut(s) 219, 227
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 217
Cfr9I CCCGGG 1 cut(s) 214
Csp6I GTAC 1 cut(s) 201
CviJI RGCY 5 cut(s) 110, 219, 227, 285, 312
CviKI_1 RGCY 5 cut(s) 110, 219, 227, 285, 312
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 190
DriI GACNNNNNGTC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 212
Eam1105I GACNNNNNGTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 304
FaiI YATR 2 cut(s) 255, 257
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 2 cut(s) 219, 227
HapII CCGG 3 cut(s) 178, 198, 215
HinfI GANTC 4 cut(s) 86, 122, 128, 194
HpaII CCGG 3 cut(s) 178, 198, 215
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 2 cut(s) 90, 302
Hpy188I TCNGA 3 cut(s) 127, 133, 157
Hpy8I GTNNAC 2 cut(s) 90, 302
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 298
KpnI GGTACC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 8 cut(s) 20, 84, 132, 191, 209, 211, 228, 291
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 144
MboII GAAGA 2 cut(s) 199, 281
MluCI AATT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 2 cut(s) 215, 285
MspI CCGG 3 cut(s) 178, 198, 215
MspR9I CCNGG 3 cut(s) 215, 216, 306
MvaI CCWGG 1 cut(s) 306
NciI CCSGG 2 cut(s) 215, 216
NlaIV GGNNCC 1 cut(s) 202
PfeI GAWTC 3 cut(s) 122, 128, 194
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 217
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SatI GCNGC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 215, 216, 306
SetI ASST 5 cut(s) 112, 151, 301, 307, 314
SmaI CCCGGG 1 cut(s) 216
Sse9I AATT 1 cut(s) 14
SsiI CCGC 2 cut(s) 228, 242
StyD4I CCNGG 3 cut(s) 213, 214, 304
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 301
TaqI TCGA 3 cut(s) 25, 210, 315
TasI AATT 1 cut(s) 14
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 3 cut(s) 122, 128, 194
TspGWI ACGGA 1 cut(s) 70
TspMI CCCGGG 1 cut(s) 214
XapI RAATTY 1 cut(s) 14
XmaI CCCGGG 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.