FvH4_1g27790

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016741
Physical Location & Seq
Forward (+)
19373457 .. 19373774
318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27790.t1

Sequence Viewer

Length: 318 bp
ATGCACATGGAGTTCAGACAAGAGCTTTGCAGCATTTTGGGTTGCAACTCGGTTCCTCCTAAGCTTTTCATAAAGGGGAGATACATTGGGGGAGCAGAGGAGGTTCTGGCGCTTCATGAGCAAGGAAAGCTGCGGCCGCTCCTTGCTGGAGTGCCGTTGGATCTATCACAAGGATCATGTCAAGGTTGCGCTGGAGTTCGGTTTGTGGTTTGTTTCAAGTGCAATGGAAGTCACAAGCTCATTGCCGACAAGGGAGAGTCTAATGTGTGCCCGCAGTGCAATGAAAATGGGTTGATTATATGCCCCTATTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

106

Amino Acids

11.36

Weight (kDa)

7.48

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRXCR1-2_C PF23733 60 - 105 1.8e-17 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016741)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27780 FvH4_1g27790 FvH4_7g05400
malus_domestica MD02G1258300.v1.1 MD07G1062500.v1.1
prunus_persica Prupe.2G073600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332071
rosa_laevigata RLG00000029694
rosa_roxburghii Rroxscaffold_4G00318400
rosa_rugosa Rorug01G0098200
rosa_samantha Rh1AG122100 Rh1BG093500 Rh1CG116700
rosa_wichuraiana Rw1G009950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 139
AciI CCGC 3 cut(s) 133, 137, 272
AclWI GGATC 2 cut(s) 168, 181
AcoI YGGCCR 1 cut(s) 134
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 4 cut(s) 25, 64, 130, 238
AluI AGCT 4 cut(s) 25, 64, 130, 238
AlwI GGATC 2 cut(s) 168, 181
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 30, 130
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AspLEI GCGC 2 cut(s) 112, 191
BaeGI GKGCMC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 42, 117
BceAI ACGGC 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 4 cut(s) 31, 131, 134, 137
BlsI GCNGC 4 cut(s) 32, 132, 135, 138
BmiI GGNNCC 1 cut(s) 54
BpmI CTGGAG 2 cut(s) 168, 213
Bpu10I CCTNAGC 1 cut(s) 60
Bse3DI GCAATG 3 cut(s) 229, 240, 286
BseMI GCAATG 3 cut(s) 229, 240, 286
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 272
BseX3I CGGCCG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 42, 117
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 137
BsnI GGCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 160, 173
BspACI CCGC 3 cut(s) 133, 137, 272
BspANI GGCC 1 cut(s) 136
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 2 cut(s) 168, 181
BsrBI CCGCTC 1 cut(s) 139
BsrDI GCAATG 3 cut(s) 229, 240, 286
BssMI GATC 2 cut(s) 160, 173
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 2 cut(s) 112, 191
BstKTI GATC 2 cut(s) 163, 176
BstMBI GATC 2 cut(s) 160, 173
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 4 cut(s) 118, 127, 136, 276
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 2 cut(s) 42, 117
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BstZI CGGCCG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 136
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 272
CciI TCATGA 1 cut(s) 115
CciNI GCGGCCGC 1 cut(s) 134
CfoI GCGC 2 cut(s) 112, 191
CviAII CATG 3 cut(s) 7, 116, 177
CviJI RGCY 5 cut(s) 25, 64, 130, 136, 238
CviKI_1 RGCY 5 cut(s) 25, 64, 130, 136, 238
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 162, 175
DpnII GATC 2 cut(s) 160, 173
EaeI YGGCCR 1 cut(s) 134
EagI CGGCCG 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 134
Eco52I CGGCCG 1 cut(s) 134
FaeI CATG 3 cut(s) 10, 119, 180
FaiI YATR 6 cut(s) 8, 71, 117, 178, 299, 301
FatI CATG 3 cut(s) 6, 115, 176
FauI CCCGC 1 cut(s) 279
Fnu4HI GCNGC 4 cut(s) 31, 131, 134, 137
Fsp4HI GCNGC 4 cut(s) 31, 131, 134, 137
GlaI GCGC 2 cut(s) 111, 190
GluI GCNGC 4 cut(s) 31, 131, 134, 137
GsuI CTGGAG 2 cut(s) 168, 213
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 1 cut(s) 136
HhaI GCGC 2 cut(s) 112, 191
Hin1II CATG 3 cut(s) 10, 119, 180
Hin6I GCGC 2 cut(s) 110, 189
HinP1I GCGC 2 cut(s) 110, 189
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 1 cut(s) 116
HpyCH4V TGCA 5 cut(s) 4, 30, 45, 222, 279
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 127, 136, 276
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 3 cut(s) 10, 119, 180
HspAI GCGC 2 cut(s) 110, 189
Kzo9I GATC 2 cut(s) 160, 173
LmnI GCTCC 2 cut(s) 92, 144
LpnPI CCDG 3 cut(s) 92, 132, 177
Lsp1109I GCAGC 2 cut(s) 42, 117
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 162, 175
MbiI CCGCTC 1 cut(s) 139
MboI GATC 2 cut(s) 160, 173
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 3 cut(s) 66, 91, 94
MwoI GCNNNNNNNGC 4 cut(s) 118, 127, 136, 276
NdeII GATC 2 cut(s) 160, 173
NlaIII CATG 3 cut(s) 10, 119, 180
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 230
NotI GCGGCCGC 1 cut(s) 134
PagI TCATGA 1 cut(s) 115
PkrI GCNGC 4 cut(s) 32, 132, 135, 138
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 160
SatI GCNGC 4 cut(s) 31, 131, 134, 137
Sau3AI GATC 2 cut(s) 160, 173
SchI GAGTC 1 cut(s) 266
SduI GDGCHC 1 cut(s) 272
SetI ASST 6 cut(s) 27, 66, 105, 132, 187, 240
SsiI CCGC 3 cut(s) 133, 137, 272
TauI GCSGC 2 cut(s) 136, 139
TscAI CASTG 1 cut(s) 281
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 2 cut(s) 30, 130
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 58, 104, 297
TspRI CASTG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.