MD07G1062500.v1.1

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016741
Physical Location & Seq
Forward (+)
5868169 .. 5869281
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1062500.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGAAAGGGGTGAAAGGGAAGTTGATGAAGAAGTTGAAGTCAATCGGACCGATTGGAATTGGGTACCTGAAACCGCAAGATCGAGTTCTTCAGGTAAATGCATCGGATGGATATGCGGATTCAAATCTCAACATTCAGACCCATAATTTCATTTCAAAAGAAACGGAGCAGCAGGAGAAGATCAAACAGTTAGAGAAGAATGTGACGGAGCTAGAGCCTGACATTATCGATGTCACCGAGCTTATGAGAGACCTGGATGATGAAGAAGAGTCGGAGCCCGATGGCGATTATATCGACATCAACGACAAGGAAAACGTTAGGCCTAAAACGAAGGAGAAACACCGAGTAGAGGGCAACAACAATTGGGTTAAAACAGAGTCAAATTTGGAGGAAAACAGAGCTTCTAAAGCTTCAGAAAATCGAAGAGAGACCCCTTTGTCGCAGATTGACATCTCGTCTTTCCGGAGACCGGACTTAAACTCCGGTAGCCTCTTCGACCCGAACCTACTGTTAGCCTTTCAGCAAGCGGTGATGGAATATATGAGGTTTACTTCAAATGAAGACATAGAATCCAATTTTGTAGAAGCGCCAGATCCCGAGCCAGAGCAAGAGCCGCCCTCAAATAAAGACCCTCTATTAGGCTTCGAAGAAAAGTGTCCGCCTGGTAGTTTGGAATCATCGGTAGTTCTCTACACTACAACCCTTCGGGGGATTCGAAAGACTTTTGACGATTGCAACAGCGTTCGATTTCTTTTAGAGAGTTTTTGGGTTGTGTTCTACGAGCGAGATGTGTCAATGCACATGGAATTCCGACAAGAGCTTTGGAAGATTTTGGATTGCAAAGCAGTGCCTCCAAATCTTTTCATAAAGGGGAGATATATCGGGGGAGCAGAGGAGGTCTTGACACTTCACGAGCAAGGAAAGCTCAAGCCGCTCTTTGAAGGAGTGCCGATGGATCGGTCCATTGGCCCCTGTGAAGCTTGTGATAGAGTTCGGTTTGTGATTTGCTTCCGATGCAGTGGGAGCTGCAAGCTCGTTGCCGATGAGGGGCAGCCGGATAAGTGCCCCGAGTGTAACGAAAATGGGTTGATTATTTGCCCCTTGTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

371

Amino Acids

42.15

Weight (kDa)

4.81

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 228 - 294 8e-11 Glutaredoxin
GRXCR1-2_C PF23733 325 - 370 1.6e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016741)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27780 FvH4_1g27790 FvH4_7g05400
malus_domestica MD02G1258300.v1.1 MD07G1062500.v1.1
prunus_persica Prupe.2G073600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332071
rosa_laevigata RLG00000029694
rosa_roxburghii Rroxscaffold_4G00318400
rosa_rugosa Rorug01G0098200
rosa_samantha Rh1AG122100 Rh1BG093500 Rh1CG116700
rosa_wichuraiana Rw1G009950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 436
Acc65I GGTACC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 63
AccBSI CCGCTC 1 cut(s) 934
AccIII TCCGGA 1 cut(s) 462
AciI CCGC 6 cut(s) 74, 116, 527, 614, 659, 932
AclI AACGTT 1 cut(s) 315
AclWI GGATC 2 cut(s) 587, 963
AcsI RAATTY 2 cut(s) 382, 806
AcuI CTGAAG 2 cut(s) 74, 396
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 5 cut(s) 349, 469, 638, 708, 1047
AgsI TTSAA 5 cut(s) 37, 123, 156, 555, 941
AhdI GACNNNNNGTC 1 cut(s) 454
AjnI CCWGG 2 cut(s) 252, 661
AluBI AGCT 9 cut(s) 211, 241, 401, 410, 820, 925, 980, 1026, 1033
AluI AGCT 9 cut(s) 211, 241, 401, 410, 820, 925, 980, 1026, 1033
Alw26I GTCTC 3 cut(s) 243, 422, 460
AlwI GGATC 2 cut(s) 587, 963
Ama87I CYCGRG 2 cut(s) 596, 1067
Aor13HI TCCGGA 1 cut(s) 462
AoxI GGCC 2 cut(s) 320, 967
ApeKI GCWGC 3 cut(s) 169, 1026, 1051
ApoI RAATTY 2 cut(s) 382, 806
ArsI GACNNNNNNTTYG 2 cut(s) 804, 836
Asp718I GGTACC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 3 cut(s) 47, 960, 968
AsuHPI GGTGA 3 cut(s) 22, 226, 541
AsuII TTCGAA 2 cut(s) 645, 715
AvaI CYCGRG 2 cut(s) 596, 1067
AvaII GGWCC 2 cut(s) 47, 960
BaeGI GKGCMC 1 cut(s) 1067
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 279
BauI CACGAG 1 cut(s) 911
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 3 cut(s) 181, 1013, 1063
BccI CCATC 4 cut(s) 101, 275, 526, 946
BciT130I CCWGG 2 cut(s) 254, 663
BcoDI GTCTC 3 cut(s) 243, 422, 460
BfaI CTAG 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 590
BisI GCNGC 5 cut(s) 170, 614, 932, 1027, 1052
BlsI GCNGC 5 cut(s) 171, 615, 933, 1028, 1053
Bme1390I CCNGG 2 cut(s) 254, 663
Bme18I GGWCC 2 cut(s) 47, 960
BmeRI GACNNNNNGTC 1 cut(s) 454
BmeT110I CYCGRG 2 cut(s) 596, 1067
BmgT120I GGNCC 3 cut(s) 47, 960, 968
BmiI GGNNCC 3 cut(s) 65, 276, 970
BmrFI CCNGG 2 cut(s) 254, 663
BmsI GCATC 2 cut(s) 110, 1004
BpiI GAAGAC 1 cut(s) 567
BplI GAGNNNNNCTC 2 cut(s) 602, 634
Bpu14I TTCGAA 2 cut(s) 645, 715
BpuEI CTTGAG 1 cut(s) 911
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 2 cut(s) 123, 449
BsaI GGTCTC 3 cut(s) 243, 422, 460
BsaWI WCCGGW 3 cut(s) 462, 469, 482
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 5 cut(s) 349, 469, 638, 708, 1047
Bse8I GATNNNNATC 2 cut(s) 123, 449
BseAI TCCGGA 1 cut(s) 462
BseBI CCWGG 2 cut(s) 254, 663
BseCI ATCGAT 1 cut(s) 228
BseGI GGATG 2 cut(s) 112, 262
BseJI GATNNNNATC 2 cut(s) 123, 449
BseLI CCNNNNNNNGG 5 cut(s) 349, 469, 638, 708, 1047
BseRI GAGGAG 1 cut(s) 908
BseSI GKGCMC 1 cut(s) 1067
BseXI GCAGC 3 cut(s) 181, 1013, 1063
BshFI GGCC 2 cut(s) 322, 969
BshNI GGYRCC 1 cut(s) 63
BshVI ATCGAT 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 596, 1067
BsiSI CCGG 4 cut(s) 463, 470, 483, 1055
BslI CCNNNNNNNGG 5 cut(s) 349, 469, 638, 708, 1047
BsmAI GTCTC 3 cut(s) 243, 422, 460
BsnI GGCC 2 cut(s) 322, 969
Bso31I GGTCTC 3 cut(s) 243, 422, 460
BsoBI CYCGRG 2 cut(s) 596, 1067
Bsp119I TTCGAA 2 cut(s) 645, 715
Bsp1286I GDGCHC 2 cut(s) 279, 1067
Bsp13I TCCGGA 1 cut(s) 462
Bsp143I GATC 4 cut(s) 79, 180, 592, 955
BspACI CCGC 6 cut(s) 74, 116, 527, 614, 659, 932
BspANI GGCC 2 cut(s) 322, 969
BspDI ATCGAT 1 cut(s) 228
BspEI TCCGGA 1 cut(s) 462
BspLI GGNNCC 3 cut(s) 65, 276, 970
BspPI GGATC 2 cut(s) 587, 963
BspT104I TTCGAA 2 cut(s) 645, 715
BspT107I GGYRCC 1 cut(s) 63
BspTNI GGTCTC 3 cut(s) 243, 422, 460
BsrBI CCGCTC 1 cut(s) 934
BssMI GATC 4 cut(s) 79, 180, 592, 955
BssSI CACGAG 1 cut(s) 911
Bst2BI CACGAG 1 cut(s) 911
Bst2UI CCWGG 2 cut(s) 254, 663
Bst4CI ACNGT 2 cut(s) 189, 510
Bst6I CTCTTC 3 cut(s) 261, 418, 497
BstBI TTCGAA 2 cut(s) 645, 715
BstC8I GCNNGC 2 cut(s) 525, 1031
BstENI CCTNNNNNAGG 1 cut(s) 636
BstF5I GGATG 2 cut(s) 112, 262
BstH2I RGCGCY 1 cut(s) 590
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 4 cut(s) 82, 183, 595, 958
BstMAI GTCTC 3 cut(s) 243, 422, 460
BstMBI GATC 4 cut(s) 79, 180, 592, 955
BstMWI GCNNNNNNNGC 6 cut(s) 407, 613, 922, 931, 1014, 1023
BstNI CCWGG 2 cut(s) 254, 663
BstSCI CCNGG 2 cut(s) 252, 661
BstSLI GKGCMC 1 cut(s) 1067
BstV1I GCAGC 3 cut(s) 181, 1013, 1063
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 2 cut(s) 322, 969
BsuTUI ATCGAT 1 cut(s) 228
BtsCI GGATG 2 cut(s) 112, 262
BtsI GCAGTG 2 cut(s) 852, 1024
BtsIMutI CAGTG 2 cut(s) 852, 1024
Cac8I GCNNGC 2 cut(s) 525, 1031
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 3 cut(s) 47, 960, 968
ClaI ATCGAT 1 cut(s) 228
CpoI CGGWCCG 1 cut(s) 47
Csp6I GTAC 1 cut(s) 64
CspI CGGWCCG 1 cut(s) 47
CviAII CATG 1 cut(s) 802
CviQI GTAC 1 cut(s) 64
DpnI GATC 4 cut(s) 81, 182, 594, 957
DpnII GATC 4 cut(s) 79, 180, 592, 955
DrdI GACNNNNNNGTC 1 cut(s) 436
DriI GACNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 436
Eam1104I CTCTTC 3 cut(s) 261, 418, 497
Eam1105I GACNNNNNGTC 1 cut(s) 454
EarI CTCTTC 3 cut(s) 261, 418, 497
EciI GGCGGA 1 cut(s) 648
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 279
Eco31I GGTCTC 3 cut(s) 243, 422, 460
Eco47I GGWCC 2 cut(s) 47, 960
Eco57I CTGAAG 2 cut(s) 74, 396
Eco88I CYCGRG 2 cut(s) 596, 1067
EcoNI CCTNNNNNAGG 1 cut(s) 636
EcoRI GAATTC 1 cut(s) 806
EcoRII CCWGG 2 cut(s) 252, 661
EcoT22I ATGCAT 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 279
FaeI CATG 1 cut(s) 805
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FatI CATG 1 cut(s) 801
Fnu4HI GCNGC 5 cut(s) 170, 614, 932, 1027, 1052
FokI GGATG 2 cut(s) 119, 269
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 5 cut(s) 170, 614, 932, 1027, 1052
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 588
GluI GCNGC 5 cut(s) 170, 614, 932, 1027, 1052
HaeII RGCGCY 1 cut(s) 590
HaeIII GGCC 2 cut(s) 322, 969
HapII CCGG 4 cut(s) 463, 470, 483, 1055
HhaI GCGC 1 cut(s) 589
Hin1II CATG 1 cut(s) 805
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HindIII AAGCTT 2 cut(s) 408, 978
HinfI GANTC 6 cut(s) 119, 269, 377, 569, 674, 712
HpaII CCGG 4 cut(s) 463, 470, 483, 1055
HphI GGTGA 3 cut(s) 22, 226, 541
Hpy166II GTNNAC 1 cut(s) 549
Hpy188I TCNGA 7 cut(s) 47, 106, 138, 274, 415, 812, 1013
Hpy188III TCNNGA 4 cut(s) 463, 596, 901, 911
Hpy8I GTNNAC 1 cut(s) 549
HpyAV CCTTC 3 cut(s) 325, 713, 935
HpyCH4III ACNGT 2 cut(s) 189, 510
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 6 cut(s) 101, 735, 799, 840, 1017, 1029
HpyF10VI GCNNNNNNNGC 6 cut(s) 407, 613, 922, 931, 1014, 1023
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 1 cut(s) 805
HspAI GCGC 1 cut(s) 587
Kpn2I TCCGGA 1 cut(s) 462
KpnI GGTACC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 79, 180, 592, 955
LmnI GCTCC 5 cut(s) 166, 208, 274, 887, 1023
Lsp1109I GCAGC 3 cut(s) 181, 1013, 1063
LweI GCATC 2 cut(s) 110, 1004
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 202, 232, 1073
MalI GATC 4 cut(s) 81, 182, 594, 957
MbiI CCGCTC 1 cut(s) 934
MboI GATC 4 cut(s) 79, 180, 592, 955
MfeI CAATTG 1 cut(s) 361
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 2 cut(s) 279, 1067
MluCI AATT 6 cut(s) 57, 145, 361, 382, 574, 806
MlyI GAGTC 2 cut(s) 278, 386
MmeI TCCRAC 2 cut(s) 252, 835
Mph1103I ATGCAT 1 cut(s) 103
MroI TCCGGA 1 cut(s) 462
MseI TTAA 2 cut(s) 369, 476
MspI CCGG 4 cut(s) 463, 470, 483, 1055
MspR9I CCNGG 2 cut(s) 254, 663
MunI CAATTG 1 cut(s) 361
MvaI CCWGG 2 cut(s) 254, 663
MwoI GCNNNNNNNGC 6 cut(s) 407, 613, 922, 931, 1014, 1023
NdeII GATC 4 cut(s) 79, 180, 592, 955
NlaIII CATG 1 cut(s) 805
NlaIV GGNNCC 3 cut(s) 65, 276, 970
NmuCI GTSAC 2 cut(s) 202, 232
NsiI ATGCAT 1 cut(s) 103
NspV TTCGAA 2 cut(s) 645, 715
PceI AGGCCT 1 cut(s) 322
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 300, 712
PfeI GAWTC 4 cut(s) 119, 569, 674, 712
PkrI GCNGC 5 cut(s) 171, 615, 933, 1028, 1053
PleI GAGTC 2 cut(s) 277, 385
PpsI GAGTC 2 cut(s) 277, 385
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 252, 661
PspGI CCWGG 2 cut(s) 252, 661
PspN4I GGNNCC 3 cut(s) 65, 276, 970
PspPI GGNCC 3 cut(s) 47, 960, 968
PsuI RGATCY 1 cut(s) 592
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
Rsr2I CGGWCCG 1 cut(s) 47
RsrII CGGWCCG 1 cut(s) 47
SaqAI TTAA 2 cut(s) 369, 476
SatI GCNGC 5 cut(s) 170, 614, 932, 1027, 1052
Sau3AI GATC 4 cut(s) 79, 180, 592, 955
Sau96I GGNCC 3 cut(s) 47, 960, 968
SchI GAGTC 2 cut(s) 278, 386
ScrFI CCNGG 2 cut(s) 254, 663
SduI GDGCHC 2 cut(s) 279, 1067
SfaNI GCATC 2 cut(s) 110, 1004
SfuI TTCGAA 2 cut(s) 645, 715
SinI GGWCC 2 cut(s) 47, 960
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 6 cut(s) 57, 145, 361, 382, 574, 806
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 6 cut(s) 74, 116, 527, 614, 659, 932
SspMI CTAG 1 cut(s) 212
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 2 cut(s) 252, 661
TaaI ACNGT 2 cut(s) 189, 510
TaiI ACGT 1 cut(s) 318
TaqI TCGA 8 cut(s) 82, 228, 294, 421, 495, 645, 715, 745
TaqII GACCGA 2 cut(s) 64, 948
TasI AATT 6 cut(s) 57, 145, 361, 382, 574, 806
TauI GCSGC 2 cut(s) 616, 934
TfiI GAWTC 4 cut(s) 119, 569, 674, 712
Tru1I TTAA 2 cut(s) 369, 476
Tru9I TTAA 2 cut(s) 369, 476
TscAI CASTG 2 cut(s) 852, 1024
TseFI GTSAC 2 cut(s) 202, 232
TseI GCWGC 3 cut(s) 169, 1026, 1051
Tsp45I GTSAC 2 cut(s) 202, 232
TspDTI ATGAA 6 cut(s) 17, 41, 139, 276, 573, 853
TspGWI ACGGA 2 cut(s) 179, 221
TspRI CASTG 2 cut(s) 852, 1024
VpaK11BI GGWCC 2 cut(s) 47, 960
XagI CCTNNNNNAGG 1 cut(s) 636
XapI RAATTY 2 cut(s) 382, 806
XspI CTAG 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.