Rh1AG122100

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016741
Physical Location & Seq
Forward (+)
22800986 .. 22802676
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG122100.1

Sequence Viewer

Length: 1098 bp
ATGAAGGGAATGAAAGGAAAACTTGTGAAGAGGTTGAAATCAATCCCAAAAGTTCTTCAGGTGAAGCCACAAGATCGAGTTCTTCAGGTAAGCGCATCAGATGGGTATGTGGAAAACCTTCCAAACATCTCAGTTGTCAAATTCCACAAGGAAGAAACAGAGCAGGACAAGCTCAACTGCAGCAGTGTGAGAGAGCAGCAACAACCTGATATTATTGACGTCGATGAGCTCATGAGAGACCTCCTCACAGATTCTGAGGATGAAGTCGACGACGACGACGACAAAGAAAACATTAAGCCAAGAGTGAAGGCAAAGGACCCAGTTGCTTCTAAGGAGTTTAAACTGAAGCAGAGTAAAGCTACTTTCCCAGATTCAGAAGCACCACCGGTACTAGAGTCGGAAAGCCGTAAACAAACACCTCTATCGGAGATTGACATCTCGTCTTTCCGGCGACCGGACTTAGATTCCGGTACCCTCTTCGACCCGGACCTACTCGCCGCCTTTCGGCAAGCCGTTATTGAGTATATGAAATTGAGTGAAGCAGAGAGGAAGTCAATAACAGAGATACAAAATATTGAAAACAATGAAAAAGAGGCAGAGGCAGAGGCGGAGCCGGACCCTCTATTAGGCTTCGAAGAGAAATGTCCACCTGGGAGCTTGGAGTCGGTAATTCTCTACACGACAACCCTTCGAGGGATACGAAAGACCTTCGACGATTGCAACAGCATCCGATTTCTGTTAGAGAGCTTTCGGGTTGTGTATTTCGAGCGTGATGTATCGATGCACATGGAATTTAGACAAGAGCTGTGGAAGATTTTGGATTGTAAATCGGTTCCTCCTAAGCTTTTCATCAAGGGGAGATACATTGGGGGAGCAGAGGAGGTTTTGACGCTTCACGAGCAAGGAAAGCTGCGGCCTCTCCTTGCAGGAGTGCCGTTGGATCAATCAGATGGACCGTGTCAAGGTTGCGCTGGAGTTCGGTTTGTGGTTTGTTTCAAATGCCACGGAAGTCACAAGATCATTGCCCAAGAGGGAGAGTCTAATGTGTGCCCGCAGTGTAACGAAAATGGGTTGATTATATGCCCATATTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

365

Amino Acids

41.24

Weight (kDa)

5.02

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 223 - 289 1.3e-10 Glutaredoxin
GRXCR1-2_C PF23733 320 - 365 1.5e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016741)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27780 FvH4_1g27790 FvH4_7g05400
malus_domestica MD02G1258300.v1.1 MD07G1062500.v1.1
prunus_persica Prupe.2G073600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332071
rosa_laevigata RLG00000029694
rosa_roxburghii Rroxscaffold_4G00318400
rosa_rugosa Rorug01G0098200
rosa_samantha Rh1AG122100 Rh1BG093500 Rh1CG116700
rosa_wichuraiana Rw1G009950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
Acc65I GGTACC 1 cut(s) 470
AccB1I GGYRCC 1 cut(s) 470
AccI GTMKAC 1 cut(s) 267
AciI CCGC 4 cut(s) 498, 608, 913, 1052
AclWI GGATC 1 cut(s) 948
AcsI RAATTY 2 cut(s) 140, 791
AcuI CTGAAG 3 cut(s) 41, 68, 365
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 2 cut(s) 390, 472
AfiI CCNNNNNNNGG 5 cut(s) 454, 504, 626, 693, 962
AgeI ACCGGT 1 cut(s) 385
AgsI TTSAA 3 cut(s) 37, 578, 997
AhdI GACNNNNNGTC 1 cut(s) 439
AjnI CCWGG 1 cut(s) 649
AluBI AGCT 8 cut(s) 172, 229, 359, 657, 747, 805, 844, 910
AluI AGCT 8 cut(s) 172, 229, 359, 657, 747, 805, 844, 910
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 948
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 1 cut(s) 914
ApeKI GCWGC 3 cut(s) 180, 196, 910
ApoI RAATTY 2 cut(s) 140, 791
AsiGI ACCGGT 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 117
Asp718I GGTACC 1 cut(s) 470
AspLEI GCGC 2 cut(s) 95, 971
AspS9I GGNCC 4 cut(s) 316, 487, 616, 953
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 633
AvaII GGWCC 4 cut(s) 316, 487, 616, 953
BaeGI GKGCMC 1 cut(s) 1052
BaeI ACNNNNGTAYC 2 cut(s) 380, 413
BanI GGYRCC 1 cut(s) 470
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 896
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 192, 208, 897
BccI CCATC 2 cut(s) 95, 944
BceAI ACGGC 3 cut(s) 390, 497, 919
BciT130I CCWGG 1 cut(s) 651
BciVI GTATCC 1 cut(s) 690
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 178
BfuI GTATCC 1 cut(s) 690
BisI GCNGC 5 cut(s) 181, 197, 498, 911, 914
BlsI GCNGC 5 cut(s) 182, 198, 499, 912, 915
Bme1390I CCNGG 2 cut(s) 485, 651
Bme18I GGWCC 4 cut(s) 316, 487, 616, 953
BmeRI GACNNNNNGTC 1 cut(s) 439
BmgT120I GGNCC 4 cut(s) 316, 487, 616, 953
BmiI GGNNCC 5 cut(s) 318, 472, 612, 618, 834
BmrFI CCNGG 2 cut(s) 485, 651
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 3 cut(s) 104, 735, 771
BmuI ACTGGG 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 993
Bpu10I CCTNAGC 1 cut(s) 840
Bpu14I TTCGAA 1 cut(s) 633
BpuMI CCSGG 1 cut(s) 485
Bsa29I ATCGAT 1 cut(s) 779
BsaBI GATNNNNATC 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 650, 1003
BsaWI WCCGGW 3 cut(s) 385, 454, 467
Bsc4I CCNNNNNNNGG 5 cut(s) 454, 504, 626, 693, 962
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 1020
Bse8I GATNNNNATC 1 cut(s) 434
BseBI CCWGG 1 cut(s) 651
BseCI ATCGAT 1 cut(s) 779
BseDI CCNNGG 2 cut(s) 650, 1003
BseGI GGATG 2 cut(s) 265, 726
BseJI GATNNNNATC 1 cut(s) 434
BseLI CCNNNNNNNGG 5 cut(s) 454, 504, 626, 693, 962
BseMI GCAATG 1 cut(s) 1020
BseMII CTCAG 2 cut(s) 144, 246
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 2 cut(s) 233, 893
BseSI GKGCMC 1 cut(s) 1052
BseXI GCAGC 3 cut(s) 192, 208, 897
Bsh1285I CGRYCG 1 cut(s) 455
BshFI GGCC 1 cut(s) 916
BshNI GGYRCC 1 cut(s) 470
BshTI ACCGGT 1 cut(s) 385
BshVI ATCGAT 1 cut(s) 779
BsiEI CGRYCG 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 6 cut(s) 386, 448, 455, 468, 485, 614
BslI CCNNNNNNNGG 5 cut(s) 454, 504, 626, 693, 962
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 1 cut(s) 916
Bso31I GGTCTC 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 231, 1052
Bsp143I GATC 3 cut(s) 73, 940, 1017
BspACI CCGC 4 cut(s) 498, 608, 913, 1052
BspANI GGCC 1 cut(s) 916
BspCNI CTCAG 2 cut(s) 143, 247
BspDI ATCGAT 1 cut(s) 779
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 5 cut(s) 318, 472, 612, 618, 834
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 1 cut(s) 948
BspT104I TTCGAA 1 cut(s) 633
BspT107I GGYRCC 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 1020
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 650, 1003
BssMI GATC 3 cut(s) 73, 940, 1017
BssNI GRCGYC 1 cut(s) 219
BssSI CACGAG 1 cut(s) 896
Bst2BI CACGAG 1 cut(s) 896
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 1 cut(s) 957
Bst6I CTCTTC 3 cut(s) 23, 482, 630
BstACI GRCGYC 1 cut(s) 219
BstBI TTCGAA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 510, 1052
BstDEI CTNAG 5 cut(s) 130, 255, 330, 460, 840
BstDSI CCRYGG 1 cut(s) 1003
BstENI CCTNNNNNAGG 1 cut(s) 624
BstF5I GGATG 2 cut(s) 265, 726
BstHHI GCGC 2 cut(s) 95, 971
BstKTI GATC 3 cut(s) 76, 943, 1020
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 73, 940, 1017
BstMCI CGRYCG 1 cut(s) 455
BstMWI GCNNNNNNNGC 3 cut(s) 169, 898, 907
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 2 cut(s) 483, 649
BstSFI CTRYAG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 1052
BstV1I GCAGC 3 cut(s) 192, 208, 897
Bsu15I ATCGAT 1 cut(s) 779
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 1 cut(s) 916
BsuTUI ATCGAT 1 cut(s) 779
BtgI CCRYGG 1 cut(s) 1003
BtsCI GGATG 2 cut(s) 265, 726
BtsI GCAGTG 2 cut(s) 190, 1061
BtsIMutI CAGTG 2 cut(s) 190, 1061
Cac8I GCNNGC 2 cut(s) 510, 1052
CaiI CAGNNNCTG 1 cut(s) 254
CciI TCATGA 1 cut(s) 231
CfoI GCGC 2 cut(s) 95, 971
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 4 cut(s) 316, 487, 616, 953
ClaI ATCGAT 1 cut(s) 779
CseI GACGC 1 cut(s) 898
Csp6I GTAC 2 cut(s) 389, 471
CspAI ACCGGT 1 cut(s) 385
CspCI CAANNNNNGTGG 2 cut(s) 788, 823
CviAII CATG 2 cut(s) 232, 787
CviQI GTAC 2 cut(s) 389, 471
DdeI CTNAG 5 cut(s) 130, 255, 330, 460, 840
DpnI GATC 3 cut(s) 75, 942, 1019
DpnII GATC 3 cut(s) 73, 940, 1017
DraI TTTAAA 1 cut(s) 340
DriI GACNNNNNGTC 1 cut(s) 439
Eam1104I CTCTTC 3 cut(s) 23, 482, 630
Eam1105I GACNNNNNGTC 1 cut(s) 439
EarI CTCTTC 3 cut(s) 23, 482, 630
EciI GGCGGA 1 cut(s) 623
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 4 cut(s) 316, 487, 616, 953
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 3 cut(s) 41, 68, 365
EcoICRI GAGCTC 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 2 cut(s) 235, 790
FaiI YATR 8 cut(s) 108, 233, 525, 527, 788, 1079, 1081, 1087
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 2 cut(s) 231, 786
FauI CCCGC 1 cut(s) 1059
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 5 cut(s) 181, 197, 498, 911, 914
FokI GGATG 2 cut(s) 272, 713
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 5 cut(s) 181, 197, 498, 911, 914
FspBI CTAG 1 cut(s) 392
GlaI GCGC 2 cut(s) 94, 970
GluI GCNGC 5 cut(s) 181, 197, 498, 911, 914
GsuI CTGGAG 1 cut(s) 993
HaeIII GGCC 1 cut(s) 916
HapII CCGG 6 cut(s) 386, 448, 455, 468, 485, 614
HgaI GACGC 1 cut(s) 898
HhaI GCGC 2 cut(s) 95, 971
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 2 cut(s) 235, 790
Hin6I GCGC 2 cut(s) 93, 969
HinP1I GCGC 2 cut(s) 93, 969
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 6 cut(s) 251, 371, 395, 464, 662, 1037
HpaII CCGG 6 cut(s) 386, 448, 455, 468, 485, 614
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 3 cut(s) 268, 410, 647
Hpy188I TCNGA 7 cut(s) 100, 256, 376, 400, 427, 731, 949
Hpy188III TCNNGA 2 cut(s) 232, 896
Hpy8I GTNNAC 3 cut(s) 268, 410, 647
Hpy99I CGWCG 6 cut(s) 224, 272, 275, 278, 281, 716
HpyAV CCTTC 4 cut(s) 128, 301, 698, 718
HpyCH4III ACNGT 1 cut(s) 957
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 180, 720, 784, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 898, 907
HpyF3I CTNAG 5 cut(s) 130, 255, 330, 460, 840
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 2 cut(s) 235, 790
HspAI GCGC 2 cut(s) 93, 969
KpnI GGTACC 1 cut(s) 474
Kzo9I GATC 3 cut(s) 73, 940, 1017
LmnI GCTCC 3 cut(s) 610, 654, 872
Lsp1109I GCAGC 3 cut(s) 192, 208, 897
LweI GCATC 3 cut(s) 104, 735, 771
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 1010, 1058
MalI GATC 3 cut(s) 75, 942, 1019
MboI GATC 3 cut(s) 73, 940, 1017
MboII GAAGA 7 cut(s) 40, 47, 74, 164, 469, 647, 823
MhlI GDGCHC 2 cut(s) 231, 1052
MluCI AATT 4 cut(s) 140, 530, 669, 791
MlyI GAGTC 3 cut(s) 404, 671, 1046
MmeI TCCRAC 2 cut(s) 378, 918
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 2 cut(s) 294, 339
MspI CCGG 6 cut(s) 386, 448, 455, 468, 485, 614
MspR9I CCNGG 2 cut(s) 485, 651
MssI GTTTAAAC 1 cut(s) 340
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 3 cut(s) 169, 898, 907
NciI CCSGG 1 cut(s) 485
NdeII GATC 3 cut(s) 73, 940, 1017
NlaIII CATG 2 cut(s) 235, 790
NlaIV GGNNCC 5 cut(s) 318, 472, 612, 618, 834
NmuCI GTSAC 1 cut(s) 1010
NspV TTCGAA 1 cut(s) 633
PagI TCATGA 1 cut(s) 231
PcsI WCGNNNNNNNCGW 3 cut(s) 273, 276, 697
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 251, 371, 464
PflFI GACNNNGTC 1 cut(s) 957
PinAI ACCGGT 1 cut(s) 385
PkrI GCNGC 5 cut(s) 182, 198, 499, 912, 915
PleI GAGTC 3 cut(s) 403, 670, 1045
PmeI GTTTAAAC 1 cut(s) 340
PpsI GAGTC 3 cut(s) 403, 670, 1045
PpuMI RGGWCCY 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 649
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 5 cut(s) 318, 472, 612, 618, 834
PspPI GGNCC 4 cut(s) 316, 487, 616, 953
PspPPI RGGWCCY 1 cut(s) 316
PstI CTGCAG 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 957
RsaI GTAC 2 cut(s) 390, 472
RsaNI GTAC 2 cut(s) 389, 471
SacI GAGCTC 1 cut(s) 231
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 294, 339
SatI GCNGC 5 cut(s) 181, 197, 498, 911, 914
Sau3AI GATC 3 cut(s) 73, 940, 1017
Sau96I GGNCC 4 cut(s) 316, 487, 616, 953
SchI GAGTC 3 cut(s) 404, 671, 1046
ScrFI CCNGG 2 cut(s) 485, 651
SduI GDGCHC 2 cut(s) 231, 1052
SfaNI GCATC 3 cut(s) 104, 735, 771
SfcI CTRYAG 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 633
SinI GGWCC 4 cut(s) 316, 487, 616, 953
Sse9I AATT 4 cut(s) 140, 530, 669, 791
SsiI CCGC 4 cut(s) 498, 608, 913, 1052
SspI AATATT 1 cut(s) 574
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 483, 649
TaaI ACNGT 1 cut(s) 957
TaiI ACGT 1 cut(s) 222
TaqI TCGA 9 cut(s) 76, 222, 267, 480, 633, 691, 711, 765, 779
TasI AATT 4 cut(s) 140, 530, 669, 791
TauI GCSGC 2 cut(s) 500, 916
TfiI GAWTC 3 cut(s) 251, 371, 464
Tru1I TTAA 2 cut(s) 294, 339
Tru9I TTAA 2 cut(s) 294, 339
TscAI CASTG 2 cut(s) 190, 1061
TseFI GTSAC 1 cut(s) 1010
TseI GCWGC 3 cut(s) 180, 196, 910
Tsp45I GTSAC 1 cut(s) 1010
TspDTI ATGAA 6 cut(s) 17, 26, 276, 542, 600, 838
TspGWI ACGGA 1 cut(s) 1020
TspRI CASTG 2 cut(s) 190, 1061
Tth111I GACNNNGTC 1 cut(s) 957
VpaK11BI GGWCC 4 cut(s) 316, 487, 616, 953
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 2 cut(s) 140, 791
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 1 cut(s) 392
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.