FvH4_7g05400

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016741
Physical Location & Seq
Forward (+)
5717103 .. 5720021
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05400.t1

Sequence Viewer

Length: 852 bp
ATGAAGGGAGTGAAAGGCAAACTTGTGAAGAGGTTGAAATCAATCCCAAAAGTTCTTCAGGTGAAGCCACAAGCATCATCAGATGGGTATGTGGAGAACATGTCTGTTGTCAAATTCTACAATCGAACAGAGCAGGACTACTGTGTGAGCATTGACAAAGAAAACATCCCAGTTGCTTCCGTGGAGTCTACTTTGAAACAGAGTAAAGCTACTTCCCCAGATTCAGAATCAGAAGCATTAGTGTTACCTTTATCGGAGATTGACATCTCGTCTTTCCGGCGACCCGACTTAGATTCCGGTACCCTCTTCGACCCGGGGCTACTGGCCGCCTTTCGGCAAGCGGTGATTGAGTATATGAGATTGAGTGAAGACCCTCTCTTGGGCTTCCAAGAGAAACGTCCACCTGGGAGCATCGACTCAGTAATTCTCTACACCACAAGCCTTCGAGGGATACGCAAAACGTTCGACGATTGCAACAGCATCCGCTTTCTGTTAGAGAGCTTTCGGGTTGCGTATTTCGAGCGTGATGTGTCAATGCACATGGAGTTCAGACAAGAGCTTTGCAGCATTTTGGGTTGCAACTCGGTTCCTCCTAAGCTTTTCATAAAGGGGAGATACATTGGGGGAGCAGAGGAGGTTCTGGCGCTTCATGAGCAAGGAAAGCTGCGGCCGCTTCTTGCAGGAGTGCCGTTGGATCTATCACAAGGATCATGTCAAGGTTGCGCCGGAGTTCGGTTTGTGGTTTGTTTCAAGTGCAATGGAAGTCACAAGCTCATTGCTGACAAGGGAGAGTCTAATGTGTGCCCGCAGTGCAATGAGAATGGGTTGATTATATGCCCCTATTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

284

Amino Acids

31.35

Weight (kDa)

7.42

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 141 - 207 2.3e-10 Glutaredoxin
GRXCR1-2_C PF23733 238 - 283 1.2e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016741)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27780 FvH4_1g27790 FvH4_7g05400
malus_domestica MD02G1258300.v1.1 MD07G1062500.v1.1
prunus_persica Prupe.2G073600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332071
rosa_laevigata RLG00000029694
rosa_roxburghii Rroxscaffold_4G00318400
rosa_rugosa Rorug01G0098200
rosa_samantha Rh1AG122100 Rh1BG093500 Rh1CG116700
rosa_wichuraiana Rw1G009950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 188
AciI CCGC 6 cut(s) 327, 341, 484, 667, 671, 806
AclI AACGTT 1 cut(s) 461
AclWI GGATC 2 cut(s) 702, 715
AcoI YGGCCR 2 cut(s) 324, 668
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 4 cut(s) 333, 379, 380, 732
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 3 cut(s) 37, 196, 751
AhdI GACNNNNNGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 6 cut(s) 209, 501, 559, 598, 664, 772
AluI AGCT 6 cut(s) 209, 501, 559, 598, 664, 772
AlwI GGATC 2 cut(s) 702, 715
Ama87I CYCGRG 1 cut(s) 313
AoxI GGCC 2 cut(s) 324, 668
ApeKI GCWGC 2 cut(s) 564, 664
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
Asp718I GGTACC 1 cut(s) 299
AspLEI GCGC 2 cut(s) 646, 725
AsuC2I CCSGG 2 cut(s) 314, 315
AsuHPI GGTGA 2 cut(s) 73, 355
AvaI CYCGRG 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 806
BanI GGYRCC 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 196, 228
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 576, 651
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 673
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciT130I CCWGG 1 cut(s) 405
BciVI GTATCC 1 cut(s) 444
BcnI CCSGG 2 cut(s) 314, 315
BfoI RGCGCY 1 cut(s) 647
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 5 cut(s) 327, 565, 665, 668, 671
BlsI GCNGC 5 cut(s) 328, 566, 666, 669, 672
Bme1390I CCNGG 3 cut(s) 314, 315, 405
BmeRI GACNNNNNGTC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 301, 588
BmrFI CCNGG 3 cut(s) 314, 315, 405
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 3 cut(s) 83, 420, 489
BmuI ACTGGG 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 375
Bpu10I CCTNAGC 1 cut(s) 594
BpuMI CCSGG 2 cut(s) 314, 315
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 4 cut(s) 180, 313, 314, 404
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 4 cut(s) 333, 379, 380, 732
Bse1I ACTGG 2 cut(s) 170, 327
Bse3DI GCAATG 3 cut(s) 763, 774, 820
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 4 cut(s) 180, 313, 314, 404
BseGI GGATG 2 cut(s) 165, 480
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 4 cut(s) 333, 379, 380, 732
BseMI GCAATG 3 cut(s) 763, 774, 820
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 2 cut(s) 170, 327
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 1 cut(s) 806
BseX3I CGGCCG 1 cut(s) 668
BseXI GCAGC 2 cut(s) 576, 651
Bsh1285I CGRYCG 1 cut(s) 671
BshFI GGCC 2 cut(s) 326, 670
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 671
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 4 cut(s) 277, 297, 314, 726
BslI CCNNNNNNNGG 4 cut(s) 333, 379, 380, 732
BsnI GGCC 2 cut(s) 326, 670
BsoBI CYCGRG 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 806
Bsp143I GATC 2 cut(s) 694, 707
BspACI CCGC 6 cut(s) 327, 341, 484, 667, 671, 806
BspANI GGCC 2 cut(s) 326, 670
BspCNI CTCAG 1 cut(s) 431
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 301, 588
BspPI GGATC 2 cut(s) 702, 715
BspT107I GGYRCC 1 cut(s) 299
BsrDI GCAATG 3 cut(s) 763, 774, 820
BsrI ACTGG 2 cut(s) 170, 327
BssECI CCNNGG 4 cut(s) 180, 313, 314, 404
BssMI GATC 2 cut(s) 694, 707
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 23, 311
BstC8I GCNNGC 2 cut(s) 339, 806
BstDEI CTNAG 3 cut(s) 289, 418, 594
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 165, 480
BstH2I RGCGCY 1 cut(s) 647
BstHHI GCGC 2 cut(s) 646, 725
BstKTI GATC 2 cut(s) 697, 710
BstMBI GATC 2 cut(s) 694, 707
BstMCI CGRYCG 1 cut(s) 671
BstMWI GCNNNNNNNGC 4 cut(s) 652, 661, 670, 810
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 3 cut(s) 312, 313, 403
BstSLI GKGCMC 1 cut(s) 806
BstV1I GCAGC 2 cut(s) 576, 651
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BstZI CGGCCG 1 cut(s) 668
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 2 cut(s) 326, 670
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 165, 480
BtsI GCAGTG 1 cut(s) 815
BtsIMutI CAGTG 1 cut(s) 815
Cac8I GCNNGC 2 cut(s) 339, 806
CciI TCATGA 1 cut(s) 649
CciNI GCGGCCGC 1 cut(s) 668
CfoI GCGC 2 cut(s) 646, 725
Cfr9I CCCGGG 1 cut(s) 313
Csp6I GTAC 1 cut(s) 300
CviAII CATG 4 cut(s) 100, 541, 650, 711
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 3 cut(s) 289, 418, 594
DpnI GATC 2 cut(s) 696, 709
DpnII GATC 2 cut(s) 694, 707
DriI GACNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 2 cut(s) 324, 668
EagI CGGCCG 1 cut(s) 668
Eam1104I CTCTTC 2 cut(s) 23, 311
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 2 cut(s) 23, 311
EclXI CGGCCG 1 cut(s) 668
Eco52I CGGCCG 1 cut(s) 668
Eco57I CTGAAG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 4 cut(s) 103, 544, 653, 714
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 4 cut(s) 99, 540, 649, 710
FauI CCCGC 1 cut(s) 813
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 5 cut(s) 327, 565, 665, 668, 671
FokI GGATG 2 cut(s) 152, 467
Fsp4HI GCNGC 5 cut(s) 327, 565, 665, 668, 671
GlaI GCGC 2 cut(s) 645, 724
GluI GCNGC 5 cut(s) 327, 565, 665, 668, 671
HaeII RGCGCY 1 cut(s) 647
HaeIII GGCC 2 cut(s) 326, 670
HapII CCGG 4 cut(s) 277, 297, 314, 726
HhaI GCGC 2 cut(s) 646, 725
Hin1II CATG 4 cut(s) 103, 544, 653, 714
Hin6I GCGC 2 cut(s) 644, 723
HinP1I GCGC 2 cut(s) 644, 723
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 6 cut(s) 185, 221, 227, 293, 416, 791
HpaII CCGG 4 cut(s) 277, 297, 314, 726
HphI GGTGA 2 cut(s) 73, 355
Hpy166II GTNNAC 2 cut(s) 189, 401
Hpy188I TCNGA 5 cut(s) 82, 226, 232, 256, 551
Hpy188III TCNNGA 1 cut(s) 650
Hpy8I GTNNAC 2 cut(s) 189, 401
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 397, 461
HpyCH4V TGCA 7 cut(s) 474, 538, 564, 579, 680, 756, 813
HpyF10VI GCNNNNNNNGC 4 cut(s) 652, 661, 670, 810
HpyF3I CTNAG 3 cut(s) 289, 418, 594
HpySE526I ACGT 2 cut(s) 397, 461
Hsp92II CATG 4 cut(s) 103, 544, 653, 714
HspAI GCGC 2 cut(s) 644, 723
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 2 cut(s) 694, 707
LmnI GCTCC 2 cut(s) 408, 626
Lsp1109I GCAGC 2 cut(s) 576, 651
LweI GCATC 3 cut(s) 83, 420, 489
MaeII ACGT 2 cut(s) 397, 461
MaeIII GTNAC 2 cut(s) 243, 764
MalI GATC 2 cut(s) 696, 709
MboI GATC 2 cut(s) 694, 707
MboII GAAGA 4 cut(s) 40, 47, 298, 380
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 1 cut(s) 806
MluCI AATT 2 cut(s) 113, 423
MlyI GAGTC 3 cut(s) 194, 410, 800
MmeI TCCRAC 1 cut(s) 672
MnlI CCTC 7 cut(s) 24, 314, 384, 440, 600, 625, 628
MspI CCGG 4 cut(s) 277, 297, 314, 726
MspR9I CCNGG 3 cut(s) 314, 315, 405
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 4 cut(s) 652, 661, 670, 810
NciI CCSGG 2 cut(s) 314, 315
NdeII GATC 2 cut(s) 694, 707
NlaIII CATG 4 cut(s) 103, 544, 653, 714
NlaIV GGNNCC 2 cut(s) 301, 588
NmuCI GTSAC 1 cut(s) 764
NotI GCGGCCGC 1 cut(s) 668
NspI RCATGY 1 cut(s) 103
PagI TCATGA 1 cut(s) 649
PciI ACATGT 1 cut(s) 99
PfeI GAWTC 3 cut(s) 221, 227, 293
PkrI GCNGC 5 cut(s) 328, 566, 666, 669, 672
PleI GAGTC 3 cut(s) 193, 410, 799
PpsI GAGTC 3 cut(s) 193, 410, 799
PscI ACATGT 1 cut(s) 99
Psp1406I AACGTT 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 301, 588
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SatI GCNGC 5 cut(s) 327, 565, 665, 668, 671
Sau3AI GATC 2 cut(s) 694, 707
SchI GAGTC 3 cut(s) 194, 410, 800
ScrFI CCNGG 3 cut(s) 314, 315, 405
SduI GDGCHC 1 cut(s) 806
SfaNI GCATC 3 cut(s) 83, 420, 489
SmaI CCCGGG 1 cut(s) 315
Sse9I AATT 2 cut(s) 113, 423
SsiI CCGC 6 cut(s) 327, 341, 484, 667, 671, 806
StyD4I CCNGG 3 cut(s) 312, 313, 403
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 2 cut(s) 400, 464
TaqI TCGA 6 cut(s) 124, 309, 414, 445, 465, 519
TasI AATT 2 cut(s) 113, 423
TauI GCSGC 3 cut(s) 329, 670, 673
TfiI GAWTC 3 cut(s) 221, 227, 293
TscAI CASTG 1 cut(s) 815
TseFI GTSAC 1 cut(s) 764
TseI GCWGC 2 cut(s) 564, 664
Tsp45I GTSAC 1 cut(s) 764
TspDTI ATGAA 3 cut(s) 17, 592, 638
TspGWI ACGGA 1 cut(s) 169
TspMI CCCGGG 1 cut(s) 313
TspRI CASTG 1 cut(s) 815
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 103
XmaI CCCGGG 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.