Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005740

Physical Location & Seq

Genomic Coordinates Forward (+)

20037482 .. 20045658

Gene Structure 8177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28200.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATGATGAGTGTGGTGACGCCGTGGCAGACCTCCCCGCTATTCTCCTTGTTACCCTTAAATCCCCGTAATACCCCTCTCAGCAGCCTACGCTCGACTCCCCACTCGGCTCGTTTATCCATGGCCGCTTCCACTCAGTCAACTCCAGCTGTTGAGAAGGGAGACGACGGTGACAACATGTTTCAGTTGATTCAGTCTCATCAGGAAAAGGCTTCTCGCCTTCCCCCGGTTCAGGAAATCCGAACTCTTGTCGATCGTAGTGTTCGCGGAGTGCTCTCTACCTTTTCACAGAAGTATGAGGGCTATCCATCAGGATCCATGGTCGACTTTGCATGCGATGCTGATGGATCTCCCATTTTAGCTCTGAGCAGTTTGGCACTTCATACCAAGGATTTAACTCAAAACCCCAAGTGCTCGTTGCTCATTGCCAGAGATCCTGAGGACAGAACTGATTTGTTGGTCACTCTGCATGGTGATGCAATTCCTGTTTCTGAGAAGGATCATGCAGCCATTCGAACTGCATATTTGGCAAGGCATCCCGATGCATTTTGGGTTGACTTTGGTGACTTCCAATTCATGCGTATTGAACCAAAAGTTGTACGATATGTCTCAGGGGTTGCAACAGCTTTATTAGGATCAGGAGAGTTCAATAATGAGGAGTATAAAGCCGCAAAAGTTGATCCAATTGCTCAATTTTCAAAGCCTGTTGCATCTCATATGAATAAGGATCATGCTGAAGATACTAAAGCTATTGTGCAGCACTCAACTTCAATTCTGGTCGACTTTGCTTACATTCTGGACTTGGATTCAGTTGGTTTTAATGTCAAGGCTTCTTATCAGGGTAGTAATTTCAAGCTTCGAATACCTTTTCCTAGACGTGCAGTGGATCGAAAGGATGTGAAGACTCTAATAGTGGAAATGCTTCATGCGGCAAATGCTCAAGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Putative_PNPOx Pyrid_oxidase_2

Protein Analysis

317

Amino Acids

34.84

Weight (kDa)

6.36

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNPOx_N	PF01243	19 - 144	2.9e-13	Pyridoxamine 5'-phosphate oxidase
CREG_beta-barrel	PF13883	22 - 145	5.3e-17	CREG, beta-barrel
DUF2470	PF10615	175 - 248	2.8e-16	Domain of unknown function (DUF2470)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03890 AT3G03890
fragaria_vesca	FvH4_1g28200 FvH4_1g28200 FvH4_1g28200 FvH4_1g28200
malus_domestica	MD12G1004000.v1.1 MD12G1004200.v1.1 MD14G1002900.v1.1
prunus_persica	Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1
pyrus_communis	pycom12g00350 pycom14g00080
rosa_chinensis	RchiOBHm_Chr3g0497041
rosa_laevigata	RLG00000022486
rosa_multiflora	Rmu_sc0008737.1_g000002 Rmu_sc0009312.1_g000002 Rmu_sc0035985.1_g000001 Rmu_sc0036941.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388440
rosa_rugosa	Rorug03G0289000 Rorug03G0289100
rosa_samantha	Rh3AG333400 Rh3BG370700 Rh3CG367400 Rh3DG368700
rosa_wichuraiana	Rw3G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	324, 780
AccII	CGCG	1 cut(s)	267
AciI	CCGC	5 cut(s)	38, 126, 267, 669, 929
AclWI	GGATC	9 cut(s)	309, 322, 355, 428, 507, 643, 674, 735, 894
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	226, 232
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	5 cut(s)	587, 649, 699, 771, 853
AjiI	CACGTC	1 cut(s)	878
AluBI	AGCT	5 cut(s)	149, 362, 626, 749, 856
AluI	AGCT	5 cut(s)	149, 362, 626, 749, 856
Alw21I	GWGCWC	2 cut(s)	276, 416
Alw26I	GTCTC	3 cut(s)	156, 201, 613
AlwI	GGATC	9 cut(s)	309, 322, 355, 428, 507, 643, 674, 735, 894
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	84, 506, 757
Asp700I	GAANNNNTTC	1 cut(s)	921
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	4 cut(s)	28, 182, 485, 575
AsuII	TTCGAA	2 cut(s)	514, 859
AxyI	CCTNAGG	1 cut(s)	438
BamHI	GGATCC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	908
Bbv12I	GWGCWC	2 cut(s)	276, 416
BbvI	GCAGC	3 cut(s)	96, 518, 769
BccI	CCATC	2 cut(s)	316, 338
BceAI	ACGGC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	3 cut(s)	156, 201, 613
BfaI	CTAG	1 cut(s)	873
BisI	GCNGC	6 cut(s)	85, 126, 507, 669, 758, 930
BlsI	GCNGC	6 cut(s)	86, 127, 508, 670, 759, 931
Bme1390I	CCNGG	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	878
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	5 cut(s)	328, 466, 532, 544, 719
BpiI	GAAGAC	1 cut(s)	908
BpmI	CTGGAG	1 cut(s)	129
Bpu14I	TTCGAA	2 cut(s)	514, 859
BpuEI	CTTGAG	1 cut(s)	924
BpuMI	CCSGG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	5 cut(s)	23, 120, 225, 318, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 232
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	5 cut(s)	23, 120, 225, 318, 387
BseGI	GGATG	2 cut(s)	535, 901
BseLI	CCNNNNNNNGG	2 cut(s)	226, 232
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	6 cut(s)	94, 149, 356, 429, 483, 624
BseRI	GAGGAG	1 cut(s)	671
BseXI	GCAGC	3 cut(s)	96, 518, 769
BsgI	GTGCAG	2 cut(s)	776, 900
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	2 cut(s)	276, 416
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	226, 232
BsmAI	GTCTC	3 cut(s)	156, 201, 613
BsmBI	CGTCTC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	125
Bsp119I	TTCGAA	2 cut(s)	514, 859
Bsp1286I	GDGCHC	2 cut(s)	276, 416
Bsp143I	GATC	9 cut(s)	253, 314, 347, 433, 499, 635, 679, 727, 886
Bsp19I	CCATGG	2 cut(s)	120, 318
BspACI	CCGC	5 cut(s)	38, 126, 267, 669, 929
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	6 cut(s)	93, 148, 357, 430, 484, 623
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	9 cut(s)	309, 322, 355, 428, 507, 643, 674, 735, 894
BspT104I	TTCGAA	2 cut(s)	514, 859
BsrDI	GCAATG	1 cut(s)	423
BssECI	CCNNGG	5 cut(s)	23, 120, 225, 318, 387
BssMI	GATC	9 cut(s)	253, 314, 347, 433, 499, 635, 679, 727, 886
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	3 cut(s)	120, 318, 387
Bst4CI	ACNGT	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstBI	TTCGAA	2 cut(s)	514, 859
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	6 cut(s)	80, 135, 365, 438, 492, 610
BstDSI	CCRYGG	3 cut(s)	23, 120, 318
BstF5I	GGATG	2 cut(s)	535, 901
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	9 cut(s)	256, 317, 350, 436, 502, 638, 682, 730, 889
BstMAI	GTCTC	3 cut(s)	156, 201, 613
BstMBI	GATC	9 cut(s)	253, 314, 347, 433, 499, 635, 679, 727, 886
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 338, 527, 935
BstNSI	RCATGY	2 cut(s)	181, 336
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	96, 518, 769
BstV2I	GAAGAC	1 cut(s)	908
BstX2I	RGATCY	3 cut(s)	314, 347, 433
BstYI	RGATCY	3 cut(s)	314, 347, 433
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	3 cut(s)	23, 120, 318
BtgZI	GCGATG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	878
BtsCI	GGATG	2 cut(s)	535, 901
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	1 cut(s)	888
Cac8I	GCNNGC	1 cut(s)	334
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	599
CviAII	CATG	9 cut(s)	121, 178, 319, 333, 470, 503, 577, 731, 926
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	6 cut(s)	80, 135, 365, 438, 492, 610
DpnI	GATC	9 cut(s)	255, 316, 349, 435, 501, 637, 681, 729, 888
DpnII	GATC	9 cut(s)	253, 314, 347, 433, 499, 635, 679, 727, 886
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	3 cut(s)	120, 318, 387
Eco57I	CTGAAG	1 cut(s)	756
Eco81I	CCTNAGG	1 cut(s)	438
EcoT14I	CCWWGG	3 cut(s)	120, 318, 387
EcoT22I	ATGCAT	1 cut(s)	547
ErhI	CCWWGG	3 cut(s)	120, 318, 387
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	9 cut(s)	124, 181, 322, 336, 473, 506, 580, 734, 929
FatI	CATG	9 cut(s)	120, 177, 318, 332, 469, 502, 576, 730, 925
FauI	CCCGC	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	717
FblI	GTMKAC	2 cut(s)	324, 780
Fnu4HI	GCNGC	6 cut(s)	85, 126, 507, 669, 758, 930
FokI	GGATG	2 cut(s)	522, 908
Fsp4HI	GCNGC	6 cut(s)	85, 126, 507, 669, 758, 930
FspBI	CTAG	1 cut(s)	873
GluI	GCNGC	6 cut(s)	85, 126, 507, 669, 758, 930
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	9 cut(s)	124, 181, 322, 336, 473, 506, 580, 734, 929
HincII	GTYRAC	4 cut(s)	141, 325, 556, 781
HindII	GTYRAC	4 cut(s)	141, 325, 556, 781
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	4 cut(s)	97, 190, 806, 904
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	4 cut(s)	28, 182, 485, 575
Hpy166II	GTNNAC	4 cut(s)	141, 325, 556, 781
Hpy188I	TCNGA	3 cut(s)	242, 366, 493
Hpy188III	TCNNGA	7 cut(s)	203, 233, 312, 437, 539, 639, 797
Hpy8I	GTNNAC	4 cut(s)	141, 325, 556, 781
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	151, 230, 490
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	877
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 338, 527, 935
HpyF3I	CTNAG	6 cut(s)	80, 135, 365, 438, 492, 610
HpySE526I	ACGT	1 cut(s)	877
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	9 cut(s)	124, 181, 322, 336, 473, 506, 580, 734, 929
Kzo9I	GATC	9 cut(s)	253, 314, 347, 433, 499, 635, 679, 727, 886
Lsp1109I	GCAGC	3 cut(s)	96, 518, 769
LweI	GCATC	5 cut(s)	328, 466, 532, 544, 719
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	1 cut(s)	877
MaeIII	GTNAC	5 cut(s)	16, 51, 170, 460, 563
MalI	GATC	9 cut(s)	255, 316, 349, 435, 501, 637, 681, 729, 888
MboI	GATC	9 cut(s)	253, 314, 347, 433, 499, 635, 679, 727, 886
MboII	GAAGA	2 cut(s)	749, 913
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	3 cut(s)	314, 347, 433
MhlI	GDGCHC	2 cut(s)	276, 416
MluCI	AATT	6 cut(s)	480, 572, 684, 692, 771, 847
MlyI	GAGTC	2 cut(s)	91, 898
MnlI	CCTC	5 cut(s)	43, 87, 292, 433, 649
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	3 cut(s)	59, 395, 819
MslI	CAYNNNNRTG	2 cut(s)	474, 540
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	90, 338, 527, 935
NciI	CCSGG	1 cut(s)	227
NcoI	CCATGG	2 cut(s)	120, 318
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	9 cut(s)	253, 314, 347, 433, 499, 635, 679, 727, 886
NlaIII	CATG	9 cut(s)	124, 181, 322, 336, 473, 506, 580, 734, 929
NlaIV	GGNNCC	1 cut(s)	316
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	4 cut(s)	16, 170, 460, 563
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	2 cut(s)	181, 336
NspV	TTCGAA	2 cut(s)	514, 859
PaeI	GCATGC	1 cut(s)	336
PciI	ACATGT	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	2 cut(s)	190, 806
PkrI	GCNGC	6 cut(s)	86, 127, 508, 670, 759, 931
Ple19I	CGATCG	1 cut(s)	256
PleI	GAGTC	2 cut(s)	91, 898
PpsI	GAGTC	2 cut(s)	91, 898
PscI	ACATGT	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	316
PsuI	RGATCY	3 cut(s)	314, 347, 433
PvuI	CGATCG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
RseI	CAYNNNNRTG	2 cut(s)	474, 540
SalI	GTCGAC	2 cut(s)	323, 779
SaqAI	TTAA	3 cut(s)	59, 395, 819
SatI	GCNGC	6 cut(s)	85, 126, 507, 669, 758, 930
Sau3AI	GATC	9 cut(s)	253, 314, 347, 433, 499, 635, 679, 727, 886
SchI	GAGTC	2 cut(s)	91, 898
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	276, 416
SetI	ASST	9 cut(s)	35, 151, 284, 364, 628, 751, 858, 868, 880
SfaNI	GCATC	5 cut(s)	328, 466, 532, 544, 719
SfuI	TTCGAA	2 cut(s)	514, 859
SmiMI	CAYNNNNRTG	2 cut(s)	474, 540
SmlI	CTYRAG	1 cut(s)	939
SmoI	CTYRAG	1 cut(s)	939
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	6 cut(s)	480, 572, 684, 692, 771, 847
SsiI	CCGC	5 cut(s)	38, 126, 267, 669, 929
SspMI	CTAG	1 cut(s)	873
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	3 cut(s)	120, 318, 387
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	880
TaqI	TCGA	7 cut(s)	95, 252, 324, 514, 780, 859, 889
TasI	AATT	6 cut(s)	480, 572, 684, 692, 771, 847
TauI	GCSGC	3 cut(s)	128, 671, 932
TfiI	GAWTC	2 cut(s)	190, 806
Tru1I	TTAA	3 cut(s)	59, 395, 819
Tru9I	TTAA	3 cut(s)	59, 395, 819
TscAI	CASTG	1 cut(s)	888
TseFI	GTSAC	4 cut(s)	16, 170, 460, 563
TseI	GCWGC	3 cut(s)	84, 506, 757
Tsp45I	GTSAC	4 cut(s)	16, 170, 460, 563
TspDTI	ATGAA	4 cut(s)	371, 565, 734, 914
TspRI	CASTG	1 cut(s)	888
XceI	RCATGY	2 cut(s)	181, 336
XmiI	GTMKAC	2 cut(s)	324, 780
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	1 cut(s)	873
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.