Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009312.1

Orthogroup ID

OG0005740

Physical Location & Seq

Genomic Coordinates Forward (+)

2963 .. 11309

Gene Structure 8347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009312.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atggtgatgatgaggagtgtggtgacgccgtggcagacctgcccgctattctccttgttacccttaaatgcccgtaacacccctctcatcctacgctcagctccccactctggtcgtttatccatggctgcttcctctcagtcaacgacttttcagaatcagaatcagaatcagaatcagaatgttcccgccggcgccggagctgatgacaatatgtttcagttgattcagtctcatcaggaaaaggcttctcgtcttcccccgattcaggaaatccgaactctgctcgatcgtagtgttcgtggagtgctctctactatgtcacagaagcatgagggttatccatcaggatccatggtcgactttgcatgtgatgcagatggatctcccattttagctgttagcagtttggcatttcataccaaggatttaactcaaaatcccaagtgctcattgctcgtggctagagatcctgaggacaggactgatttgttggtcactctgcatggtgatgcaattcctgtttctgagaaggatcaagcagccattcggactgcttatttggccaggcatcctgatgcattttgggttgactttggtgacttccaattcatgcgtattgaaccaaaagttgtgcgatatgtgtcaggggttgcaacagctttattaggatcaggagagttcaacaacgaggagtataaagctgcaaaagttgatccaattgctcaattttcaaagcctgttgcatctcacatgaataaggatcatgctgaagatacaaaagccattgtgcagcattcaacttcaattccggtagactttgcttacattttggacttggatgcccttggttttaatgtcaaggctgcttatcagggtaatgctttcaagcttcgaataccgtttcccagacttgcagtggatcgaaaggatgtgaagactctaattgtggaaatgcttcatgcggcgaagcctcaagggcacttttggtttgagttgtacagcagcgaaatagtcaatgatggtcaacgccgtattctggacatttttcggccaagttggccggccgagaacatgtgtggaggacaagaaagagctgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Putative_PNPOx Pyrid_oxidase_2

Protein Analysis

367

Amino Acids

40.75

Weight (kDa)

6.26

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03890 AT3G03890
fragaria_vesca	FvH4_1g28200 FvH4_1g28200 FvH4_1g28200 FvH4_1g28200
malus_domestica	MD12G1004000.v1.1 MD12G1004200.v1.1 MD14G1002900.v1.1
prunus_persica	Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1
pyrus_communis	pycom12g00350 pycom14g00080
rosa_chinensis	RchiOBHm_Chr3g0497041
rosa_laevigata	RLG00000022486
rosa_multiflora	Rmu_sc0008737.1_g000002 Rmu_sc0009312.1_g000002 Rmu_sc0035985.1_g000001 Rmu_sc0036941.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388440
rosa_rugosa	Rorug03G0289000 Rorug03G0289100
rosa_samantha	Rh3AG333400 Rh3BG370700 Rh3CG367400 Rh3DG368700
rosa_wichuraiana	Rw3G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	2 cut(s)	360, 816
AciI	CCGC	3 cut(s)	44, 189, 965
AclWI	GGATC	9 cut(s)	345, 358, 391, 464, 543, 679, 710, 771, 930
AcoI	YGGCCR	4 cut(s)	564, 1052, 1061, 1065
AcuI	CTGAAG	1 cut(s)	792
AcyI	GRCGYC	2 cut(s)	26, 195
AfaI	GTAC	1 cut(s)	1001
AfiI	CCNNNNNNNGG	3 cut(s)	110, 268, 1039
AflIII	ACRYGT	1 cut(s)	1074
AgsI	TTSAA	6 cut(s)	623, 685, 735, 801, 807, 889
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	7 cut(s)	101, 203, 398, 662, 704, 892, 1097
AluI	AGCT	7 cut(s)	101, 203, 398, 662, 704, 892, 1097
Alw21I	GWGCWC	2 cut(s)	312, 452
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	9 cut(s)	345, 358, 391, 464, 543, 679, 710, 771, 930
AoxI	GGCC	4 cut(s)	564, 1052, 1061, 1065
ApeKI	GCWGC	6 cut(s)	128, 542, 704, 793, 866, 1005
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
Asp700I	GAANNNNTTC	1 cut(s)	957
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	4 cut(s)	16, 34, 521, 611
AsuII	TTCGAA	1 cut(s)	895
AxyI	CCTNAGG	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	984
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	458
BbsI	GAAGAC	2 cut(s)	248, 944
Bbv12I	GWGCWC	2 cut(s)	312, 452
BbvI	GCAGC	6 cut(s)	115, 554, 691, 805, 853, 1017
BccI	CCATC	3 cut(s)	352, 374, 1016
BceAI	ACGGC	2 cut(s)	13, 1017
BciT130I	CCWGG	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	465, 1102
BfoI	RGCGCY	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	47
BglI	GCCNNNNNGGC	2 cut(s)	979, 1060
BisI	GCNGC	7 cut(s)	129, 543, 705, 794, 867, 966, 1006
BlpI	GCTNAGC	1 cut(s)	97
BlsI	GCNGC	7 cut(s)	130, 544, 706, 795, 868, 967, 1007
Bme1390I	CCNGG	1 cut(s)	568
BmiI	GGNNCC	2 cut(s)	196, 352
BmrFI	CCNGG	1 cut(s)	568
BmsI	GCATC	6 cut(s)	364, 502, 568, 580, 755, 832
BpiI	GAAGAC	2 cut(s)	248, 944
Bpu1102I	GCTNAGC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	895
BpuEI	CTTGAG	1 cut(s)	960
BsaHI	GRCGYC	2 cut(s)	26, 195
BsaJI	CCNNGG	5 cut(s)	29, 123, 354, 423, 847
BsaWI	WCCGGW	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 268, 1039
Bse118I	RCCGGY	2 cut(s)	191, 1063
Bse21I	CCTNAGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	5 cut(s)	29, 123, 354, 423, 847
BseGI	GGATG	4 cut(s)	87, 571, 847, 937
BseLI	CCNNNNNNNGG	3 cut(s)	110, 268, 1039
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	4 cut(s)	111, 152, 465, 519
BseRI	GAGGAG	2 cut(s)	28, 707
BseSI	GKGCMC	1 cut(s)	984
BseX3I	CGGCCG	1 cut(s)	1065
BseXI	GCAGC	6 cut(s)	115, 554, 691, 805, 853, 1017
BsgI	GTGCAG	1 cut(s)	812
Bsh1285I	CGRYCG	2 cut(s)	292, 1068
BshFI	GGCC	4 cut(s)	566, 1054, 1063, 1067
BshNI	GGYRCC	1 cut(s)	194
BsiEI	CGRYCG	2 cut(s)	292, 1068
BsiHKAI	GWGCWC	2 cut(s)	312, 452
BsiSI	CCGG	4 cut(s)	192, 198, 812, 1064
BslI	CCNNNNNNNGG	3 cut(s)	110, 268, 1039
BsmAI	GTCTC	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	4 cut(s)	566, 1054, 1063, 1067
Bsp119I	TTCGAA	1 cut(s)	895
Bsp1286I	GDGCHC	3 cut(s)	312, 452, 984
Bsp1407I	TGTACA	1 cut(s)	999
Bsp143I	GATC	9 cut(s)	289, 350, 383, 469, 535, 671, 715, 763, 922
Bsp1720I	GCTNAGC	1 cut(s)	97
Bsp19I	CCATGG	2 cut(s)	123, 354
BspACI	CCGC	3 cut(s)	44, 189, 965
BspANI	GGCC	4 cut(s)	566, 1054, 1063, 1067
BspCNI	CTCAG	4 cut(s)	110, 151, 466, 520
BspLI	GGNNCC	2 cut(s)	196, 352
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	9 cut(s)	345, 358, 391, 464, 543, 679, 710, 771, 930
BspT104I	TTCGAA	1 cut(s)	895
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	191, 1063
BsrGI	TGTACA	1 cut(s)	999
BssAI	RCCGGY	2 cut(s)	191, 1063
BssECI	CCNNGG	5 cut(s)	29, 123, 354, 423, 847
BssMI	GATC	9 cut(s)	289, 350, 383, 469, 535, 671, 715, 763, 922
BssNI	GRCGYC	2 cut(s)	26, 195
BssSI	CACGAG	1 cut(s)	458
BssT1I	CCWWGG	4 cut(s)	123, 354, 423, 847
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	1 cut(s)	903
BstACI	GRCGYC	2 cut(s)	26, 195
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	999
BstBI	TTCGAA	1 cut(s)	895
BstC8I	GCNNGC	3 cut(s)	44, 193, 1065
BstDEI	CTNAG	4 cut(s)	97, 138, 474, 528
BstDSI	CCRYGG	3 cut(s)	29, 123, 354
BstF5I	GGATG	4 cut(s)	87, 571, 847, 937
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	9 cut(s)	292, 353, 386, 472, 538, 674, 718, 766, 925
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	9 cut(s)	289, 350, 383, 469, 535, 671, 715, 763, 922
BstMCI	CGRYCG	2 cut(s)	292, 1068
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 563, 979, 1060
BstNI	CCWGG	1 cut(s)	568
BstNSI	RCATGY	2 cut(s)	372, 1078
BstSCI	CCNGG	1 cut(s)	566
BstSLI	GKGCMC	1 cut(s)	984
BstV1I	GCAGC	6 cut(s)	115, 554, 691, 805, 853, 1017
BstV2I	GAAGAC	2 cut(s)	248, 944
BstX2I	RGATCY	3 cut(s)	350, 383, 469
BstYI	RGATCY	3 cut(s)	350, 383, 469
BstZI	CGGCCG	1 cut(s)	1065
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	4 cut(s)	566, 1054, 1063, 1067
BtgI	CCRYGG	3 cut(s)	29, 123, 354
BtsCI	GGATG	4 cut(s)	87, 571, 847, 937
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	1 cut(s)	924
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	3 cut(s)	44, 193, 1065
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	2 cut(s)	191, 1063
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	1000
CviQI	GTAC	1 cut(s)	1000
DdeI	CTNAG	4 cut(s)	97, 138, 474, 528
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	9 cut(s)	291, 352, 385, 471, 537, 673, 717, 765, 924
DpnII	GATC	9 cut(s)	289, 350, 383, 469, 535, 671, 715, 763, 922
EaeI	YGGCCR	4 cut(s)	564, 1052, 1061, 1065
EagI	CGGCCG	1 cut(s)	1065
EclXI	CGGCCG	1 cut(s)	1065
Eco130I	CCWWGG	4 cut(s)	123, 354, 423, 847
Eco52I	CGGCCG	1 cut(s)	1065
Eco57I	CTGAAG	1 cut(s)	792
Eco81I	CCTNAGG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	566
EcoT14I	CCWWGG	4 cut(s)	123, 354, 423, 847
EcoT22I	ATGCAT	1 cut(s)	583
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	4 cut(s)	123, 354, 423, 847
FauI	CCCGC	2 cut(s)	51, 196
FblI	GTMKAC	2 cut(s)	360, 816
Fnu4HI	GCNGC	7 cut(s)	129, 543, 705, 794, 867, 966, 1006
FokI	GGATG	4 cut(s)	74, 558, 854, 944
FseI	GGCCGGCC	1 cut(s)	1067
Fsp4HI	GCNGC	7 cut(s)	129, 543, 705, 794, 867, 966, 1006
FspBI	CTAG	2 cut(s)	465, 1102
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	7 cut(s)	129, 543, 705, 794, 867, 966, 1006
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	566, 1054, 1063, 1067
HapII	CCGG	4 cut(s)	192, 198, 812, 1064
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	2 cut(s)	26, 195
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	4 cut(s)	144, 361, 592, 1028
HindII	GTYRAC	4 cut(s)	144, 361, 592, 1028
HindIII	AAGCTT	1 cut(s)	890
HinfI	GANTC	7 cut(s)	157, 163, 169, 175, 226, 265, 940
HpaII	CCGG	4 cut(s)	192, 198, 812, 1064
HphI	GGTGA	4 cut(s)	16, 34, 521, 611
Hpy166II	GTNNAC	5 cut(s)	144, 361, 592, 817, 1028
Hpy188I	TCNGA	8 cut(s)	156, 162, 168, 174, 180, 278, 529, 552
Hpy188III	TCNNGA	7 cut(s)	239, 269, 348, 473, 575, 675, 1040
Hpy8I	GTNNAC	5 cut(s)	144, 361, 592, 817, 1028
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	1 cut(s)	903
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 563, 979, 1060
HpyF3I	CTNAG	4 cut(s)	97, 138, 474, 528
Hsp92I	GRCGYC	2 cut(s)	26, 195
HspAI	GCGC	1 cut(s)	195
KasI	GGCGCC	1 cut(s)	194
KroI	GCCGGC	2 cut(s)	191, 1063
KroNI	GCCGGC	2 cut(s)	193, 1065
Kzo9I	GATC	9 cut(s)	289, 350, 383, 469, 535, 671, 715, 763, 922
LmnI	GCTCC	2 cut(s)	106, 200
Lsp1109I	GCAGC	6 cut(s)	115, 554, 691, 805, 853, 1017
LweI	GCATC	6 cut(s)	364, 502, 568, 580, 755, 832
MaeI	CTAG	2 cut(s)	465, 1102
MaeIII	GTNAC	6 cut(s)	22, 57, 74, 321, 496, 599
MalI	GATC	9 cut(s)	291, 352, 385, 471, 537, 673, 717, 765, 924
MboI	GATC	9 cut(s)	289, 350, 383, 469, 535, 671, 715, 763, 922
MboII	GAAGA	3 cut(s)	248, 785, 949
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	3 cut(s)	350, 383, 469
MhlI	GDGCHC	3 cut(s)	312, 452, 984
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	6 cut(s)	516, 608, 720, 728, 807, 945
MluNI	TGGCCA	1 cut(s)	566
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	934
MnlI	CCTC	8 cut(s)	6, 93, 145, 328, 469, 685, 984, 1076
Mox20I	TGGCCA	1 cut(s)	566
Mph1103I	ATGCAT	1 cut(s)	583
MreI	CGCCGGCG	1 cut(s)	191
MroNI	GCCGGC	2 cut(s)	191, 1063
MroXI	GAANNNNTTC	1 cut(s)	957
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	3 cut(s)	65, 431, 855
MslI	CAYNNNNRTG	2 cut(s)	510, 576
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	4 cut(s)	192, 198, 812, 1064
MspR9I	CCNGG	1 cut(s)	568
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	4 cut(s)	374, 563, 979, 1060
NaeI	GCCGGC	2 cut(s)	193, 1065
NarI	GGCGCC	1 cut(s)	195
NcoI	CCATGG	2 cut(s)	123, 354
NdeII	GATC	9 cut(s)	289, 350, 383, 469, 535, 671, 715, 763, 922
NgoMIV	GCCGGC	2 cut(s)	191, 1063
NlaIV	GGNNCC	2 cut(s)	196, 352
NmeAIII	GCCGAG	1 cut(s)	1093
NmuCI	GTSAC	4 cut(s)	22, 321, 496, 599
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	2 cut(s)	372, 1078
NspV	TTCGAA	1 cut(s)	895
PciI	ACATGT	1 cut(s)	1074
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PctI	GAATGC	1 cut(s)	796
PdiI	GCCGGC	2 cut(s)	193, 1065
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	6 cut(s)	157, 163, 169, 175, 226, 265
PkrI	GCNGC	7 cut(s)	130, 544, 706, 795, 868, 967, 1007
Ple19I	CGATCG	1 cut(s)	292
PleI	GAGTC	1 cut(s)	934
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	934
PscI	ACATGT	1 cut(s)	1074
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	2 cut(s)	196, 352
PsuI	RGATCY	3 cut(s)	350, 383, 469
PvuI	CGATCG	1 cut(s)	292
RigI	GGCCGGCC	1 cut(s)	1067
RsaI	GTAC	1 cut(s)	1001
RsaNI	GTAC	1 cut(s)	1000
RseI	CAYNNNNRTG	2 cut(s)	510, 576
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	65, 431, 855
SatI	GCNGC	7 cut(s)	129, 543, 705, 794, 867, 966, 1006
Sau3AI	GATC	9 cut(s)	289, 350, 383, 469, 535, 671, 715, 763, 922
SchI	GAGTC	1 cut(s)	934
ScrFI	CCNGG	1 cut(s)	568
SduI	GDGCHC	3 cut(s)	312, 452, 984
SetI	ASST	8 cut(s)	41, 103, 205, 400, 664, 706, 894, 1099
SfaNI	GCATC	6 cut(s)	364, 502, 568, 580, 755, 832
SfiI	GGCCNNNNNGGCC	1 cut(s)	1060
SfoI	GGCGCC	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	895
SgrAI	CRCCGGYG	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	510, 576
SmlI	CTYRAG	1 cut(s)	975
SmoI	CTYRAG	1 cut(s)	975
Sse9I	AATT	6 cut(s)	516, 608, 720, 728, 807, 945
SsiI	CCGC	3 cut(s)	44, 189, 965
SspDI	GGCGCC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	465, 1102
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	4 cut(s)	123, 354, 423, 847
TaaI	ACNGT	1 cut(s)	903
TaqI	TCGA	4 cut(s)	288, 360, 895, 925
TasI	AATT	6 cut(s)	516, 608, 720, 728, 807, 945
TatI	WGTACW	1 cut(s)	999
TauI	GCSGC	1 cut(s)	968
TfiI	GAWTC	6 cut(s)	157, 163, 169, 175, 226, 265
Tru1I	TTAA	3 cut(s)	65, 431, 855
Tru9I	TTAA	3 cut(s)	65, 431, 855
TscAI	CASTG	1 cut(s)	924
TseFI	GTSAC	4 cut(s)	22, 321, 496, 599
TseI	GCWGC	6 cut(s)	128, 542, 704, 793, 866, 1005
Tsp45I	GTSAC	4 cut(s)	22, 321, 496, 599
TspDTI	ATGAA	4 cut(s)	407, 601, 770, 950
TspRI	CASTG	1 cut(s)	924
XceI	RCATGY	2 cut(s)	372, 1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	916
XmiI	GTMKAC	2 cut(s)	360, 816
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	2 cut(s)	465, 1102
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.