Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035985.1

Orthogroup ID

OG0005740

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 994

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035985.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

gatttaactcaaaatcccaagtgctcattgctcgtggctagagatcctgaggacaggactgatttgttggtcactctgcatggtgatgcaattcctgtttctgagaaggatcaagcagccattcggactgcttatttggccaggcatcctgatgcattttgggttgactttggtgacttccaattcatgcgtattgaaccaaaagttgtgcgatatgtgtcaggggttgcaacagctttattaggatcaggagagttcaacaacgaggagtataaagctgcaaaagttgatccaattgctcaattttcaaagcctgttgcagtactaacttcttaccttctattatgtgcttactggttatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Putative_PNPOx Pyrid_oxidase_2

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

5.04

Isoelectric Point (pI)

13.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03890 AT3G03890
fragaria_vesca	FvH4_1g28200 FvH4_1g28200 FvH4_1g28200 FvH4_1g28200
malus_domestica	MD12G1004000.v1.1 MD12G1004200.v1.1 MD14G1002900.v1.1
prunus_persica	Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1
pyrus_communis	pycom12g00350 pycom14g00080
rosa_chinensis	RchiOBHm_Chr3g0497041
rosa_laevigata	RLG00000022486
rosa_multiflora	Rmu_sc0008737.1_g000002 Rmu_sc0009312.1_g000002 Rmu_sc0035985.1_g000001 Rmu_sc0036941.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388440
rosa_rugosa	Rorug03G0289000 Rorug03G0289100
rosa_samantha	Rh3AG333400 Rh3BG370700 Rh3CG367400 Rh3DG368700
rosa_wichuraiana	Rw3G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	38, 117, 253, 284
AcoI	YGGCCR	1 cut(s)	138
AfaI	GTAC	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	197, 259, 309
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	2 cut(s)	236, 278
AluI	AGCT	2 cut(s)	236, 278
Alw21I	GWGCWC	1 cut(s)	26
AlwI	GGATC	4 cut(s)	38, 117, 253, 284
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	116, 278
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AsuHPI	GGTGA	2 cut(s)	95, 185
AxyI	CCTNAGG	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	140
BauI	CACGAG	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	128, 265
BciT130I	CCWGG	1 cut(s)	142
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	2 cut(s)	117, 279
BlsI	GCNGC	2 cut(s)	118, 280
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	3 cut(s)	76, 142, 154
Bse1I	ACTGG	1 cut(s)	359
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	39, 93
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	128, 265
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	43, 109, 245, 289
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	40, 94
BspPI	GGATC	4 cut(s)	38, 117, 253, 284
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	359
BssMI	GATC	4 cut(s)	43, 109, 245, 289
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	48, 102
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	4 cut(s)	46, 112, 248, 292
BstMBI	GATC	4 cut(s)	43, 109, 245, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	128, 265
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	2 cut(s)	80, 187
CviJI	RGCY	6 cut(s)	38, 119, 140, 236, 278, 313
CviKI_1	RGCY	6 cut(s)	38, 119, 140, 236, 278, 313
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	2 cut(s)	48, 102
DpnI	GATC	4 cut(s)	45, 111, 247, 291
DpnII	GATC	4 cut(s)	43, 109, 245, 289
EaeI	YGGCCR	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	157
FaeI	CATG	2 cut(s)	83, 190
FaiI	YATR	5 cut(s)	81, 188, 216, 273, 346
FatI	CATG	2 cut(s)	79, 186
Fnu4HI	GCNGC	2 cut(s)	117, 279
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	117, 279
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	2 cut(s)	117, 279
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	83, 190
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HphI	GGTGA	2 cut(s)	95, 185
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	103, 126
Hpy188III	TCNNGA	3 cut(s)	47, 149, 249
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	100, 347
HpyCH4V	TGCA	6 cut(s)	79, 89, 155, 230, 281, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	48, 102
Hsp92II	CATG	2 cut(s)	83, 190
Kzo9I	GATC	4 cut(s)	43, 109, 245, 289
Lsp1109I	GCAGC	2 cut(s)	128, 265
LweI	GCATC	3 cut(s)	76, 142, 154
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	70, 173
MalI	GATC	4 cut(s)	45, 111, 247, 291
MboI	GATC	4 cut(s)	43, 109, 245, 289
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	4 cut(s)	90, 182, 294, 302
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	2 cut(s)	43, 259
Mox20I	TGGCCA	1 cut(s)	140
Mph1103I	ATGCAT	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	5, 364
MslI	CAYNNNNRTG	2 cut(s)	84, 150
Msp20I	TGGCCA	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	4 cut(s)	43, 109, 245, 289
NlaIII	CATG	2 cut(s)	83, 190
NmuCI	GTSAC	2 cut(s)	70, 173
NsiI	ATGCAT	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	118, 280
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	84, 150
SaqAI	TTAA	2 cut(s)	5, 364
SatI	GCNGC	2 cut(s)	117, 279
Sau3AI	GATC	4 cut(s)	43, 109, 245, 289
ScaI	AGTACT	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	3 cut(s)	238, 280, 339
SfaNI	GCATC	3 cut(s)	76, 142, 154
SmiMI	CAYNNNNRTG	2 cut(s)	84, 150
Sse9I	AATT	4 cut(s)	90, 182, 294, 302
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	140
TasI	AATT	4 cut(s)	90, 182, 294, 302
TatI	WGTACW	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	5, 364
Tru9I	TTAA	2 cut(s)	5, 364
TseFI	GTSAC	2 cut(s)	70, 173
TseI	GCWGC	2 cut(s)	116, 278
Tsp45I	GTSAC	2 cut(s)	70, 173
TspDTI	ATGAA	1 cut(s)	175
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.