Rmu_sc0036941.1_g000001

Protein of unknown function (DUF2470)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036941.1
OG0005740
Physical Location & Seq
Forward (+)
1 .. 765
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036941.1_g000001.1.cds

Sequence Viewer

Length: 261 bp
gatttaactcaaaatcccaagtgctcattgctcgtggctagagatcctgaggacaggactgatttgttggtcactctgcatggtgatgcaattcctgtttctgagaaggatcaagcagccattcggactgcttatttggccaggcatcccgatgcattttgggttgactttggtgacttccaattcatgcgtattgaaccaaaagttgtgcgatatgtgtcaggggttgcaacagctttattaggatcaggagtttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2470 Putative_PNPOx Pyrid_oxidase_2

Protein Analysis

86

Amino Acids

9.47

Weight (kDa)

5.12

Isoelectric Point (pI)

14.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 38, 117, 253
AcoI YGGCCR 1 cut(s) 138
AgsI TTSAA 1 cut(s) 197
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 26
AlwI GGATC 3 cut(s) 38, 117, 253
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 118, 150
AsuHPI GGTGA 2 cut(s) 95, 185
AxyI CCTNAGG 1 cut(s) 48
BalI TGGCCA 1 cut(s) 140
BauI CACGAG 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 142
BfaI CTAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 3 cut(s) 76, 142, 154
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 39, 93
BseXI GCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 26
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 3 cut(s) 43, 109, 245
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 40, 94
BspPI GGATC 3 cut(s) 38, 117, 253
BsrDI GCAATG 1 cut(s) 26
BssMI GATC 3 cut(s) 43, 109, 245
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 48, 102
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 3 cut(s) 46, 112, 248
BstMBI GATC 3 cut(s) 43, 109, 245
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 145
CviAII CATG 2 cut(s) 80, 187
CviJI RGCY 4 cut(s) 38, 119, 140, 236
CviKI_1 RGCY 4 cut(s) 38, 119, 140, 236
DdeI CTNAG 2 cut(s) 48, 102
DpnI GATC 3 cut(s) 45, 111, 247
DpnII GATC 3 cut(s) 43, 109, 245
EaeI YGGCCR 1 cut(s) 138
Eco81I CCTNAGG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 140
EcoT22I ATGCAT 1 cut(s) 157
FaeI CATG 2 cut(s) 83, 190
FaiI YATR 3 cut(s) 81, 188, 216
FatI CATG 2 cut(s) 79, 186
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 2 cut(s) 83, 190
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HphI GGTGA 2 cut(s) 95, 185
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 103, 126
Hpy188III TCNNGA 4 cut(s) 47, 149, 249, 258
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 4 cut(s) 79, 89, 155, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 48, 102
Hsp92II CATG 2 cut(s) 83, 190
Kzo9I GATC 3 cut(s) 43, 109, 245
LpnPI CCDG 7 cut(s) 40, 60, 108, 127, 154, 207, 234
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 3 cut(s) 76, 142, 154
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 70, 173
MalI GATC 3 cut(s) 45, 111, 247
MboI GATC 3 cut(s) 43, 109, 245
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 2 cut(s) 90, 182
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 1 cut(s) 43
Mox20I TGGCCA 1 cut(s) 140
Mph1103I ATGCAT 1 cut(s) 157
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 84, 150
Msp20I TGGCCA 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 3 cut(s) 43, 109, 245
NlaIII CATG 2 cut(s) 83, 190
NmuCI GTSAC 2 cut(s) 70, 173
NsiI ATGCAT 1 cut(s) 157
PkrI GCNGC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 43
RseI CAYNNNNRTG 2 cut(s) 84, 150
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 43, 109, 245
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 26
SetI ASST 1 cut(s) 238
SfaNI GCATC 3 cut(s) 76, 142, 154
SmiMI CAYNNNNRTG 2 cut(s) 84, 150
Sse9I AATT 2 cut(s) 90, 182
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 140
TasI AATT 2 cut(s) 90, 182
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TseFI GTSAC 2 cut(s) 70, 173
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 2 cut(s) 70, 173
TspDTI ATGAA 1 cut(s) 175
XspI CTAG 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.