Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005740

Physical Location & Seq

Genomic Coordinates Forward (+)

1512998 .. 1519951

Gene Structure 6954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022486

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGTGATGATGAGGAGTGTGGTGACGCCGTGGCAGACCTGCCCGCTATTCTCCCTGTTACCCTTAAATGCCCGTAATACCCCTCTCATCCTACGCTCAGCTCCCCACTCTGGTCGTTTATCCATGGCTGCTTCCTTTCAGTCAACGACTTTTCAGAATCAGAATCAGAATCAGAATCAGAATCAGAATCAGAATGTTCCCGCCGGCGCCGGAGCTGATGACAATGTGTTTCAGTTGATTCAGTCTCATCAGGAGAAGGCTTCTCGTCTTCCCCCGATTCAGGAAATCCGAACTCTGCTCGATCGTAGTGTCCGTGGAGTGCTCTCTACTATTTCACAGAAGCATGAGGGTTATCCATCAGGATCCATGGTCGACTTTGCATGTGATGCAGATGGATCTCCCATTTTAGCTGTTAGCAGTTTGGCACTTCATACCAAGGATTTAACTCAAAATCCCAAGTGCTCATTGCTCGTCGCCAGAGATCCTGAGGACAGGACTGATTTGTTGGTCACTCTGCATGGTGATGCAATTCCTGTTTCAGAGAAGGATCAAGCAGCCATTCGGACTGCATATTTGGCCAGGCATCCCGATGCATTTTGGGTTGACTTTGGTGACTTCCAATTCATTCGTATTGAACCAAAAGTTGTCCGATATGTGTCAGGGGTTGCAACAGCTTTATTAGGATCTGGAGAGTTCAACAATGAGGAGTATAAAGATGCAAAAGTTGATCCAATTGCTCAATTTTCAAAGCCTGTTGCATCTCACATGAATAAGGATCATGCTGAAGATACAAAAGCCATTGTGCAGCATTCAACTTCAATTCCGGTAGACTTTGCTTACATTTTGGACTTGGATGCCCTTGGTTTTAATGTCAAGGCTGCTTATCAGGGTAATACTTTCAAGCTTCGAATACCGTTTCCCAGACGTGCAGTGGATCGAAAGGATGTGAAGACTCTAATTGTGGAAATGCTTCATGCGGCGAAGCCTCAAGTTGACTCTGCATTTCACGAGAGCCTTTCTCTAGATACGGACAAATCTGGACTTGGAAAATGTGAATTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Putative_PNPOx Pyrid_oxidase_2

Protein Analysis

355

Amino Acids

39.09

Weight (kDa)

6.41

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNPOx_N	PF01243	94 - 219	4.2e-14	Pyridoxamine 5'-phosphate oxidase
CREG_beta-barrel	PF13883	97 - 220	3.1e-16	CREG, beta-barrel
DUF2470	PF10615	250 - 323	1.8e-17	Domain of unknown function (DUF2470)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03890 AT3G03890
fragaria_vesca	FvH4_1g28200 FvH4_1g28200 FvH4_1g28200 FvH4_1g28200
malus_domestica	MD12G1004000.v1.1 MD12G1004200.v1.1 MD14G1002900.v1.1
prunus_persica	Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1
pyrus_communis	pycom12g00350 pycom14g00080
rosa_chinensis	RchiOBHm_Chr3g0497041
rosa_laevigata	RLG00000022486
rosa_multiflora	Rmu_sc0008737.1_g000002 Rmu_sc0009312.1_g000002 Rmu_sc0035985.1_g000001 Rmu_sc0036941.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388440
rosa_rugosa	Rorug03G0289000 Rorug03G0289100
rosa_samantha	Rh3AG333400 Rh3BG370700 Rh3CG367400 Rh3DG368700
rosa_wichuraiana	Rw3G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	206
AccI	GTMKAC	2 cut(s)	372, 828
AciI	CCGC	3 cut(s)	44, 201, 977
AclWI	GGATC	9 cut(s)	357, 370, 403, 476, 555, 691, 722, 783, 942
AcoI	YGGCCR	1 cut(s)	576
AcuI	CTGAAG	1 cut(s)	804
AcyI	GRCGYC	2 cut(s)	26, 207
AfiI	CCNNNNNNNGG	2 cut(s)	110, 280
AgsI	TTSAA	6 cut(s)	635, 697, 747, 813, 819, 901
AjiI	CACGTC	1 cut(s)	926
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	5 cut(s)	101, 215, 410, 674, 904
AluI	AGCT	5 cut(s)	101, 215, 410, 674, 904
Alw21I	GWGCWC	2 cut(s)	324, 464
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	9 cut(s)	357, 370, 403, 476, 555, 691, 722, 783, 942
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	4 cut(s)	128, 554, 805, 878
ArsI	GACNNNNNNTTYG	2 cut(s)	556, 588
Asp700I	GAANNNNTTC	1 cut(s)	969
AspLEI	GCGC	1 cut(s)	209
AsuHPI	GGTGA	4 cut(s)	16, 34, 533, 623
AsuII	TTCGAA	1 cut(s)	907
AxyI	CCTNAGG	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	578
BamHI	GGATCC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	1007
BbsI	GAAGAC	2 cut(s)	260, 956
Bbv12I	GWGCWC	2 cut(s)	324, 464
BbvI	GCAGC	4 cut(s)	115, 566, 817, 865
BccI	CCATC	2 cut(s)	364, 386
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	1022
BfoI	RGCGCY	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	5 cut(s)	129, 555, 806, 879, 978
BlpI	GCTNAGC	1 cut(s)	97
BlsI	GCNGC	5 cut(s)	130, 556, 807, 880, 979
Bme1390I	CCNGG	1 cut(s)	580
BmgBI	CACGTC	1 cut(s)	926
BmiI	GGNNCC	2 cut(s)	208, 364
BmrFI	CCNGG	1 cut(s)	580
BmsI	GCATC	7 cut(s)	376, 514, 580, 592, 706, 767, 844
BpiI	GAAGAC	2 cut(s)	260, 956
BplI	GAGNNNNNCTC	2 cut(s)	1003, 1035
BpmI	CTGGAG	1 cut(s)	708
Bpu1102I	GCTNAGC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	907
BpuEI	CTTGAG	1 cut(s)	972
BsaHI	GRCGYC	2 cut(s)	26, 207
BsaJI	CCNNGG	6 cut(s)	29, 123, 313, 366, 435, 859
BsaWI	WCCGGW	1 cut(s)	823
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 280
Bse118I	RCCGGY	1 cut(s)	203
Bse21I	CCTNAGG	1 cut(s)	486
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	6 cut(s)	29, 123, 313, 366, 435, 859
BseGI	GGATG	4 cut(s)	87, 583, 859, 949
BseLI	CCNNNNNNNGG	2 cut(s)	110, 280
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	2 cut(s)	111, 477
BseRI	GAGGAG	2 cut(s)	28, 719
BseXI	GCAGC	4 cut(s)	115, 566, 817, 865
BsgI	GTGCAG	2 cut(s)	824, 948
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	578
BshNI	GGYRCC	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	324, 464
BsiSI	CCGG	3 cut(s)	204, 210, 824
BslI	CCNNNNNNNGG	2 cut(s)	110, 280
BsmAI	GTCTC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	1 cut(s)	578
Bsp119I	TTCGAA	1 cut(s)	907
Bsp1286I	GDGCHC	2 cut(s)	324, 464
Bsp143I	GATC	9 cut(s)	301, 362, 395, 481, 547, 683, 727, 775, 934
Bsp1720I	GCTNAGC	1 cut(s)	97
Bsp19I	CCATGG	2 cut(s)	123, 366
BspACI	CCGC	3 cut(s)	44, 201, 977
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	110, 478
BspLI	GGNNCC	2 cut(s)	208, 364
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	9 cut(s)	357, 370, 403, 476, 555, 691, 722, 783, 942
BspT104I	TTCGAA	1 cut(s)	907
BspT107I	GGYRCC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	6 cut(s)	29, 123, 313, 366, 435, 859
BssMI	GATC	9 cut(s)	301, 362, 395, 481, 547, 683, 727, 775, 934
BssNI	GRCGYC	2 cut(s)	26, 207
BssSI	CACGAG	1 cut(s)	1007
BssT1I	CCWWGG	4 cut(s)	123, 366, 435, 859
Bst2BI	CACGAG	1 cut(s)	1007
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	915
BstACI	GRCGYC	2 cut(s)	26, 207
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	907
BstC8I	GCNNGC	2 cut(s)	44, 205
BstDEI	CTNAG	2 cut(s)	97, 486
BstDSI	CCRYGG	4 cut(s)	29, 123, 313, 366
BstF5I	GGATG	4 cut(s)	87, 583, 859, 949
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	9 cut(s)	304, 365, 398, 484, 550, 686, 730, 778, 937
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	9 cut(s)	301, 362, 395, 481, 547, 683, 727, 775, 934
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 575
BstNI	CCWGG	1 cut(s)	580
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	578
BstV1I	GCAGC	4 cut(s)	115, 566, 817, 865
BstV2I	GAAGAC	2 cut(s)	260, 956
BstX2I	RGATCY	4 cut(s)	362, 395, 481, 683
BstYI	RGATCY	4 cut(s)	362, 395, 481, 683
Bsu36I	CCTNAGG	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	578
BtgI	CCRYGG	4 cut(s)	29, 123, 313, 366
BtrI	CACGTC	1 cut(s)	926
BtsCI	GGATG	4 cut(s)	87, 583, 859, 949
BtsI	GCAGTG	1 cut(s)	936
BtsIMutI	CAGTG	1 cut(s)	936
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	44, 205
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	203
CseI	GACGC	1 cut(s)	34
CviAII	CATG	8 cut(s)	124, 344, 367, 381, 518, 766, 779, 974
DdeI	CTNAG	2 cut(s)	97, 486
DinI	GGCGCC	1 cut(s)	208
DpnI	GATC	9 cut(s)	303, 364, 397, 483, 549, 685, 729, 777, 936
DpnII	GATC	9 cut(s)	301, 362, 395, 481, 547, 683, 727, 775, 934
EaeI	YGGCCR	1 cut(s)	576
Eco130I	CCWWGG	4 cut(s)	123, 366, 435, 859
Eco57I	CTGAAG	1 cut(s)	804
Eco81I	CCTNAGG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	4 cut(s)	123, 366, 435, 859
EcoT22I	ATGCAT	1 cut(s)	595
EgeI	GGCGCC	1 cut(s)	208
EheI	GGCGCC	1 cut(s)	208
ErhI	CCWWGG	4 cut(s)	123, 366, 435, 859
FaeI	CATG	8 cut(s)	127, 347, 370, 384, 521, 769, 782, 977
FatI	CATG	8 cut(s)	123, 343, 366, 380, 517, 765, 778, 973
FauI	CCCGC	2 cut(s)	51, 208
FblI	GTMKAC	2 cut(s)	372, 828
Fnu4HI	GCNGC	5 cut(s)	129, 555, 806, 879, 978
FokI	GGATG	4 cut(s)	74, 570, 866, 956
Fsp4HI	GCNGC	5 cut(s)	129, 555, 806, 879, 978
FspBI	CTAG	1 cut(s)	1022
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	5 cut(s)	129, 555, 806, 879, 978
GsuI	CTGGAG	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	3 cut(s)	204, 210, 824
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	209
Hin1I	GRCGYC	2 cut(s)	26, 207
Hin1II	CATG	8 cut(s)	127, 347, 370, 384, 521, 769, 782, 977
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	4 cut(s)	144, 373, 604, 994
HindII	GTYRAC	4 cut(s)	144, 373, 604, 994
HindIII	AAGCTT	1 cut(s)	902
HpaII	CCGG	3 cut(s)	204, 210, 824
HphI	GGTGA	4 cut(s)	16, 34, 533, 623
Hpy166II	GTNNAC	5 cut(s)	144, 373, 604, 829, 994
Hpy188III	TCNNGA	9 cut(s)	251, 281, 360, 485, 587, 687, 1007, 1022, 1038
Hpy8I	GTNNAC	5 cut(s)	144, 373, 604, 829, 994
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	250, 538
HpyCH4III	ACNGT	1 cut(s)	915
HpyCH4IV	ACGT	1 cut(s)	925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 575
HpyF3I	CTNAG	2 cut(s)	97, 486
HpySE526I	ACGT	1 cut(s)	925
Hsp92I	GRCGYC	2 cut(s)	26, 207
Hsp92II	CATG	8 cut(s)	127, 347, 370, 384, 521, 769, 782, 977
HspAI	GCGC	1 cut(s)	207
KasI	GGCGCC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Kzo9I	GATC	9 cut(s)	301, 362, 395, 481, 547, 683, 727, 775, 934
LmnI	GCTCC	2 cut(s)	106, 212
Lsp1109I	GCAGC	4 cut(s)	115, 566, 817, 865
LweI	GCATC	7 cut(s)	376, 514, 580, 592, 706, 767, 844
MaeI	CTAG	1 cut(s)	1022
MaeII	ACGT	1 cut(s)	925
MaeIII	GTNAC	4 cut(s)	22, 57, 508, 611
MalI	GATC	9 cut(s)	303, 364, 397, 483, 549, 685, 729, 777, 936
MboI	GATC	9 cut(s)	301, 362, 395, 481, 547, 683, 727, 775, 934
MboII	GAAGA	3 cut(s)	260, 797, 961
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	4 cut(s)	362, 395, 481, 683
MhlI	GDGCHC	2 cut(s)	324, 464
MlsI	TGGCCA	1 cut(s)	578
MluCI	AATT	7 cut(s)	528, 620, 732, 740, 819, 957, 1055
MluNI	TGGCCA	1 cut(s)	578
Mly113I	GGCGCC	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	946, 989
MnlI	CCTC	6 cut(s)	6, 93, 340, 481, 697, 996
Mox20I	TGGCCA	1 cut(s)	578
Mph1103I	ATGCAT	1 cut(s)	595
MreI	CGCCGGCG	1 cut(s)	203
MroNI	GCCGGC	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	969
MscI	TGGCCA	1 cut(s)	578
MseI	TTAA	3 cut(s)	65, 443, 867
MslI	CAYNNNNRTG	2 cut(s)	522, 588
Msp20I	TGGCCA	1 cut(s)	578
MspI	CCGG	3 cut(s)	204, 210, 824
MspR9I	CCNGG	1 cut(s)	580
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	2 cut(s)	386, 575
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	1 cut(s)	207
NcoI	CCATGG	2 cut(s)	123, 366
NdeII	GATC	9 cut(s)	301, 362, 395, 481, 547, 683, 727, 775, 934
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	8 cut(s)	127, 347, 370, 384, 521, 769, 782, 977
NlaIV	GGNNCC	2 cut(s)	208, 364
NmuCI	GTSAC	3 cut(s)	22, 508, 611
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	384
NspV	TTCGAA	1 cut(s)	907
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	808
PdiI	GCCGGC	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	8 cut(s)	157, 163, 169, 175, 181, 187, 238, 277
PkrI	GCNGC	5 cut(s)	130, 556, 807, 880, 979
Ple19I	CGATCG	1 cut(s)	304
PleI	GAGTC	2 cut(s)	946, 989
PluTI	GGCGCC	1 cut(s)	210
PpsI	GAGTC	2 cut(s)	946, 989
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	2 cut(s)	208, 364
PsuI	RGATCY	4 cut(s)	362, 395, 481, 683
PvuI	CGATCG	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	522, 588
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	65, 443, 867
SatI	GCNGC	5 cut(s)	129, 555, 806, 879, 978
Sau3AI	GATC	9 cut(s)	301, 362, 395, 481, 547, 683, 727, 775, 934
SchI	GAGTC	2 cut(s)	946, 989
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	2 cut(s)	324, 464
SetI	ASST	7 cut(s)	41, 103, 217, 412, 676, 906, 928
SfaNI	GCATC	7 cut(s)	376, 514, 580, 592, 706, 767, 844
SfoI	GGCGCC	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	907
SgrAI	CRCCGGYG	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	522, 588
SmlI	CTYRAG	1 cut(s)	987
SmoI	CTYRAG	1 cut(s)	987
Sse9I	AATT	7 cut(s)	528, 620, 732, 740, 819, 957, 1055
SsiI	CCGC	3 cut(s)	44, 201, 977
SspDI	GGCGCC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	1022
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	4 cut(s)	123, 366, 435, 859
TaaI	ACNGT	1 cut(s)	915
TaiI	ACGT	1 cut(s)	928
TaqI	TCGA	4 cut(s)	300, 372, 907, 937
TasI	AATT	7 cut(s)	528, 620, 732, 740, 819, 957, 1055
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	8 cut(s)	157, 163, 169, 175, 181, 187, 238, 277
Tru1I	TTAA	3 cut(s)	65, 443, 867
Tru9I	TTAA	3 cut(s)	65, 443, 867
TscAI	CASTG	1 cut(s)	936
TseFI	GTSAC	3 cut(s)	22, 508, 611
TseI	GCWGC	4 cut(s)	128, 554, 805, 878
Tsp45I	GTSAC	3 cut(s)	22, 508, 611
TspDTI	ATGAA	4 cut(s)	419, 613, 782, 962
TspGWI	ACGGA	2 cut(s)	302, 1043
TspRI	CASTG	1 cut(s)	936
XbaI	TCTAGA	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XmiI	GTMKAC	2 cut(s)	372, 828
XmnI	GAANNNNTTC	1 cut(s)	969
XspI	CTAG	1 cut(s)	1022
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.