Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005740

Physical Location & Seq

Genomic Coordinates Forward (+)

501841 .. 513493

Gene Structure 11653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G004600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATGAGGACTGTGGTGACGCCTTGGCAGACCGCCCTATTCTCCCGATTAAATGGCCGTAATAGCCCTCCCTCTCCTCTCATCTTACACTTTCGCCATTCCTCCACCTCCTTCTCCTCTCCAAAAACTCCTCGTTTATCCATGGCTGCTGCCGCTCAGTCAACTACTCAGAGTGTTTCAGCTGGAGATGATGCCAATGTATTTCAGTTGATTCAATCTCATCAGGAAAAGGCTGCTCGGCTTCCCCCTGTTGAGGAAATCAGAACTCTACTTGATCTTAGTGTTCGTGGAACCCTCTCTACTTTTTCACAGAAGCATGAAGGTTATCCATCAGGATCAATGGTTGACTTTGCATGTGATGCTGATGGATCTCCAATATTAGCTGTTAGCAGCTTGGCAGTTCATACAAAGGACCTAACGCTTAATCCCAAGTGCTCATTGCTTGTGGCTAGAGATCCTGAAGATAGGACTGATTTGGTGGTCACTCTGCATGGTGATGCTATTCCTGTTCCAGAGAAGGATCAAGCAGCCATACGTACTGCATATTTGGCTAGGCATCCCAAGGCATTTTGGGTTGACTTTGGTGACTTCCAATTCATACGCATCGAGCCAAAAGTTGTGCGATACGTTTCAGGGGTTGCAACAGCTTTACTGGGATCAGGAGAGTTCAGTAATGAGGAGTATAAAGCTGCAAAAGTTGATCCAATTGCTCAATTTTCAAAGCCTGTTGCATCTCACATGAATAAGGATCATGCTGAAGATACAAAAGCCATTGTGCAACACTCCACATCGATTCCGGTGGACTTTGCCTACATTTTGGACTTGGATAGCCTTGGTTTTAATGTTAAGGCTGGTTATCAAAGGGAAAATTTCAAGCTTCGCATACCTTTTACTAGACGGGCAGAGGATCGAAAGATGTTTCAGCACCTCAGAACTGCCTTCTCTGAGGATGGTGAAATCTGGACTTGGAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Putative_PNPOx Pyrid_oxidase_2

Protein Analysis

326

Amino Acids

36.16

Weight (kDa)

7.84

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03890 AT3G03890
fragaria_vesca	FvH4_1g28200 FvH4_1g28200 FvH4_1g28200 FvH4_1g28200
malus_domestica	MD12G1004000.v1.1 MD12G1004200.v1.1 MD14G1002900.v1.1
prunus_persica	Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1
pyrus_communis	pycom12g00350 pycom14g00080
rosa_chinensis	RchiOBHm_Chr3g0497041
rosa_laevigata	RLG00000022486
rosa_multiflora	Rmu_sc0008737.1_g000002 Rmu_sc0009312.1_g000002 Rmu_sc0035985.1_g000001 Rmu_sc0036941.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388440
rosa_rugosa	Rorug03G0289000 Rorug03G0289100
rosa_samantha	Rh3AG333400 Rh3BG370700 Rh3CG367400 Rh3DG368700
rosa_wichuraiana	Rw3G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	155
AciI	CCGC	2 cut(s)	33, 153
AclWI	GGATC	8 cut(s)	343, 376, 449, 528, 664, 695, 756, 915
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	2 cut(s)	480, 777
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	215, 720, 874
AluBI	AGCT	6 cut(s)	182, 383, 393, 647, 689, 877
AluI	AGCT	6 cut(s)	182, 383, 393, 647, 689, 877
Alw21I	GWGCWC	1 cut(s)	437
AlwI	GGATC	8 cut(s)	343, 376, 449, 528, 664, 695, 756, 915
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	6 cut(s)	146, 149, 233, 390, 527, 689
ApoI	RAATTY	1 cut(s)	868
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	4 cut(s)	28, 506, 596, 965
AvaII	GGWCC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	6 cut(s)	133, 136, 220, 402, 539, 676
BccI	CCATC	3 cut(s)	337, 359, 944
BceAI	ACGGC	1 cut(s)	42
BfaI	CTAG	3 cut(s)	450, 552, 894
BisI	GCNGC	7 cut(s)	147, 150, 153, 234, 391, 528, 690
BlsI	GCNGC	7 cut(s)	148, 151, 154, 235, 392, 529, 691
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	292
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	6 cut(s)	181, 349, 487, 565, 612, 740
BmuI	ACTGGG	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	791
BsaAI	YACGTR	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	4 cut(s)	23, 141, 561, 832
BsaWI	WCCGGW	1 cut(s)	796
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	657
Bse3DI	GCAATG	1 cut(s)	437
BseCI	ATCGAT	1 cut(s)	791
BseDI	CCNNGG	4 cut(s)	23, 141, 561, 832
BseGI	GGATG	2 cut(s)	556, 955
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	4 cut(s)	170, 182, 936, 943
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	4 cut(s)	66, 106, 120, 692
BseXI	GCAGC	6 cut(s)	133, 136, 220, 402, 539, 676
BshFI	GGCC	1 cut(s)	57
BshVI	ATCGAT	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	797
BslI	CCNNNNNNNGG	1 cut(s)	253
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	9 cut(s)	274, 335, 368, 454, 520, 656, 700, 748, 907
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	2 cut(s)	33, 153
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	4 cut(s)	169, 181, 937, 942
BspDI	ATCGAT	1 cut(s)	791
BspLI	GGNNCC	1 cut(s)	292
BspPI	GGATC	8 cut(s)	343, 376, 449, 528, 664, 695, 756, 915
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	4 cut(s)	23, 141, 561, 832
BssMI	GATC	9 cut(s)	274, 335, 368, 454, 520, 656, 700, 748, 907
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	4 cut(s)	23, 141, 561, 832
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	965
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	536
BstDEI	CTNAG	5 cut(s)	156, 168, 278, 929, 945
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	556, 955
BstKTI	GATC	9 cut(s)	277, 338, 371, 457, 523, 659, 703, 751, 910
BstMBI	GATC	9 cut(s)	274, 335, 368, 454, 520, 656, 700, 748, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 152, 359, 548
BstNSI	RCATGY	1 cut(s)	357
BstSNI	TACGTA	1 cut(s)	536
BstV1I	GCAGC	6 cut(s)	133, 136, 220, 402, 539, 676
BstX2I	RGATCY	2 cut(s)	368, 454
BstYI	RGATCY	2 cut(s)	368, 454
Bsu15I	ATCGAT	1 cut(s)	791
BsuRI	GGCC	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	791
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	556, 955
Cfr13I	GGNCC	1 cut(s)	412
ClaI	ATCGAT	1 cut(s)	791
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	6 cut(s)	142, 317, 354, 491, 739, 752
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	5 cut(s)	156, 168, 278, 929, 945
DpnI	GATC	9 cut(s)	276, 337, 370, 456, 522, 658, 702, 750, 909
DpnII	GATC	9 cut(s)	274, 335, 368, 454, 520, 656, 700, 748, 907
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	965
EarI	CTCTTC	1 cut(s)	965
Eco105I	TACGTA	1 cut(s)	536
Eco130I	CCWWGG	4 cut(s)	23, 141, 561, 832
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	480, 777
EcoO109I	RGGNCCY	1 cut(s)	412
EcoT14I	CCWWGG	4 cut(s)	23, 141, 561, 832
ErhI	CCWWGG	4 cut(s)	23, 141, 561, 832
FaeI	CATG	6 cut(s)	145, 320, 357, 494, 742, 755
FatI	CATG	6 cut(s)	141, 316, 353, 490, 738, 751
Fnu4HI	GCNGC	7 cut(s)	147, 150, 153, 234, 391, 528, 690
FokI	GGATG	2 cut(s)	543, 962
Fsp4HI	GCNGC	7 cut(s)	147, 150, 153, 234, 391, 528, 690
FspBI	CTAG	3 cut(s)	450, 552, 894
GluI	GCNGC	7 cut(s)	147, 150, 153, 234, 391, 528, 690
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	797
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	6 cut(s)	145, 320, 357, 494, 742, 755
HincII	GTYRAC	3 cut(s)	162, 346, 577
HindII	GTYRAC	3 cut(s)	162, 346, 577
HindIII	AAGCTT	1 cut(s)	875
HinfI	GANTC	2 cut(s)	211, 793
HpaII	CCGG	1 cut(s)	797
HphI	GGTGA	4 cut(s)	28, 506, 596, 965
Hpy166II	GTNNAC	4 cut(s)	162, 346, 577, 802
Hpy188I	TCNGA	4 cut(s)	171, 263, 932, 946
Hpy188III	TCNNGA	7 cut(s)	45, 224, 333, 458, 512, 660, 961
Hpy8I	GTNNAC	4 cut(s)	162, 346, 577, 802
HpyAV	CCTTC	4 cut(s)	121, 314, 511, 949
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	2 cut(s)	535, 627
HpyCH4V	TGCA	7 cut(s)	353, 490, 542, 641, 692, 731, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 152, 359, 548
HpyF3I	CTNAG	5 cut(s)	156, 168, 278, 929, 945
HpySE526I	ACGT	2 cut(s)	535, 627
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	6 cut(s)	145, 320, 357, 494, 742, 755
Kzo9I	GATC	9 cut(s)	274, 335, 368, 454, 520, 656, 700, 748, 907
Lsp1109I	GCAGC	6 cut(s)	133, 136, 220, 402, 539, 676
LweI	GCATC	6 cut(s)	181, 349, 487, 565, 612, 740
MaeI	CTAG	3 cut(s)	450, 552, 894
MaeII	ACGT	2 cut(s)	535, 627
MaeIII	GTNAC	3 cut(s)	16, 481, 584
MalI	GATC	9 cut(s)	276, 337, 370, 456, 522, 658, 702, 750, 909
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	9 cut(s)	274, 335, 368, 454, 520, 656, 700, 748, 907
MboII	GAAGA	2 cut(s)	473, 770
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	2 cut(s)	368, 454
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	4 cut(s)	593, 705, 713, 868
MseI	TTAA	4 cut(s)	50, 423, 840, 846
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	797
MunI	CAATTG	1 cut(s)	705
MwoI	GCNNNNNNNGC	4 cut(s)	63, 152, 359, 548
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	9 cut(s)	274, 335, 368, 454, 520, 656, 700, 748, 907
NlaIII	CATG	6 cut(s)	145, 320, 357, 494, 742, 755
NlaIV	GGNNCC	1 cut(s)	292
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	3 cut(s)	16, 481, 584
NspI	RCATGY	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	211, 793
PkrI	GCNGC	7 cut(s)	148, 151, 154, 235, 392, 529, 691
Ppu21I	YACGTR	1 cut(s)	536
PpuMI	RGGWCCY	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	412
PspPPI	RGGWCCY	1 cut(s)	412
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PsuI	RGATCY	2 cut(s)	368, 454
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	50, 423, 840, 846
SatI	GCNGC	7 cut(s)	147, 150, 153, 234, 391, 528, 690
Sau3AI	GATC	9 cut(s)	274, 335, 368, 454, 520, 656, 700, 748, 907
Sau96I	GGNCC	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	6 cut(s)	181, 349, 487, 565, 612, 740
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	495
SnaBI	TACGTA	1 cut(s)	536
Sse9I	AATT	4 cut(s)	593, 705, 713, 868
SsiI	CCGC	2 cut(s)	33, 153
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	3 cut(s)	450, 552, 894
StyI	CCWWGG	4 cut(s)	23, 141, 561, 832
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	2 cut(s)	538, 630
TaqI	TCGA	3 cut(s)	606, 791, 910
TasI	AATT	4 cut(s)	593, 705, 713, 868
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	211, 793
Tru1I	TTAA	4 cut(s)	50, 423, 840, 846
Tru9I	TTAA	4 cut(s)	50, 423, 840, 846
TseFI	GTSAC	3 cut(s)	16, 481, 584
TseI	GCWGC	6 cut(s)	146, 149, 233, 390, 527, 689
Tsp45I	GTSAC	3 cut(s)	16, 481, 584
TspDTI	ATGAA	4 cut(s)	333, 392, 586, 755
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	868
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	3 cut(s)	450, 552, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.