Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005740

Physical Location & Seq

Genomic Coordinates Forward (+)

51069 .. 55214

Gene Structure 4146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00080.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTGAAGACTCTGGTGACGCCTTGGCAGGGGCAGACCTTCCTACTCTCCCGCTTTAATGGCCATAATAACCTTCACTCCCCTCTCATCTTACAATTTCGCCCCTCCTCCACCTTCTTCTCCTCCCCAACCACTCTTCCTCGTCGTTTATCAATGGCCGCCGCCGCCGCCGAATCACCTACTCAGAGTGTTTCAGCTGGTGATGATGCCAATGTTTTTCAGTTGATTCAATCTCATCAGGAAAAGGCTGCTCGGCTTCCCCCAGTTGAGGAAATCCGAACTCTACTTGATCGTAGTGTTCGTGGAACACTCTCCACTTTTTCTCAGAAGCATGAGGGTTATCCATCAGGATCGATGGTTGACTTTGCATGTGATGCAGATGGATCTCCAATATTAGCAGTTAGCAGCTTGGCAGTTCATACTAAGGACCTTTCCCTTAATCCCAAGTGCTCCTTGCTTGTGGCTAGAGACCCTGAAGATAGGACTGATTTGGTGGTCACGCTGCATGGTGATGCTATTCCTGTTTCCGAGAAGGATCAAGCAGCCATACGCACTGCATATTTGGCTAAGCATCCCAATGCATTCTGGGTTGACTTTGGCGACTTCCAATTCATGCGCATTGAACCAAAAGTTGTGCGATACGTGTCAGGGGTTGCAACAGCCTTATTAGGATCAGGAGAGTTCAGAAGTGAGGAGTATAAAGCTGCAAAAGTTGATCCAATTGCTCAGTTTTCAAAGCCTGTTGCATCTCACATGAACAGGGATCATGCTGATGATACAAAAGCCATTGTGCAACATTCAACGTCAATTCCGGTGGACTCTGCTTACATTTTGGACTTGGATAGCCTGGGTTTCAATGTTAAGGCTGGCTATCAGGGCGATAATTTCAAGCTCCGCATACCTTTTCCTAGACGTGCAGAGAATCGAAAGGATGTGAAGACTTTAATAGTGGAGATGCTTCAGGCTGCAAAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Putative_PNPOx Pyrid_oxidase_2

Protein Analysis

326

Amino Acids

35.76

Weight (kDa)

7.16

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03890 AT3G03890
fragaria_vesca	FvH4_1g28200 FvH4_1g28200 FvH4_1g28200 FvH4_1g28200
malus_domestica	MD12G1004000.v1.1 MD12G1004200.v1.1 MD14G1002900.v1.1
prunus_persica	Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1
pyrus_communis	pycom12g00350 pycom14g00080
rosa_chinensis	RchiOBHm_Chr3g0497041
rosa_laevigata	RLG00000022486
rosa_multiflora	Rmu_sc0008737.1_g000002 Rmu_sc0009312.1_g000002 Rmu_sc0035985.1_g000001 Rmu_sc0036941.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388440
rosa_rugosa	Rorug03G0289000 Rorug03G0289100
rosa_samantha	Rh3AG333400 Rh3BG370700 Rh3CG367400 Rh3DG368700
rosa_wichuraiana	Rw3G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	617
AciI	CCGC	6 cut(s)	52, 159, 162, 165, 168, 895
AclWI	GGATC	6 cut(s)	358, 391, 543, 679, 710, 771
AcoI	YGGCCR	2 cut(s)	61, 156
AcuI	CTGAAG	2 cut(s)	495, 944
AcyI	GRCGYC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	29, 268
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	7 cut(s)	7, 230, 623, 735, 801, 856, 889
AjiI	CACGTC	1 cut(s)	914
AjnI	CCWGG	1 cut(s)	846
AluBI	AGCT	4 cut(s)	197, 408, 704, 892
AluI	AGCT	4 cut(s)	197, 408, 704, 892
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	6 cut(s)	358, 391, 543, 679, 710, 771
AoxI	GGCC	2 cut(s)	61, 156
ApeKI	GCWGC	6 cut(s)	248, 405, 502, 542, 704, 965
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	4 cut(s)	28, 168, 212, 521
AvaII	GGWCC	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	63
BbsI	GAAGAC	2 cut(s)	14, 944
Bbv12I	GWGCWC	1 cut(s)	452
BbvI	GCAGC	6 cut(s)	235, 417, 489, 554, 691, 952
BccI	CCATC	3 cut(s)	349, 352, 374
BciT130I	CCWGG	1 cut(s)	848
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	2 cut(s)	465, 909
BlpI	GCTNAGC	1 cut(s)	567
Bme1390I	CCNGG	1 cut(s)	848
Bme18I	GGWCC	1 cut(s)	427
BmgBI	CACGTC	1 cut(s)	914
BmgT120I	GGNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	848
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	6 cut(s)	196, 364, 502, 580, 755, 945
BmuI	ACTGGG	1 cut(s)	257
BpiI	GAAGAC	2 cut(s)	14, 944
Bpu1102I	GCTNAGC	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	643
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	23, 847
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 268
Bse1I	ACTGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	848
BseCI	ATCGAT	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	23, 847
BseGI	GGATG	2 cut(s)	571, 937
BseLI	CCNNNNNNNGG	2 cut(s)	29, 268
BseMII	CTCAG	3 cut(s)	197, 338, 740
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	3 cut(s)	97, 112, 707
BseXI	GCAGC	6 cut(s)	235, 417, 489, 554, 691, 952
BsgI	GTGCAG	1 cut(s)	936
BshFI	GGCC	2 cut(s)	63, 158
BshVI	ATCGAT	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	812
BslI	CCNNNNNNNGG	2 cut(s)	29, 268
BsmAI	GTCTC	1 cut(s)	462
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	2 cut(s)	63, 158
Bso31I	GGTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	7 cut(s)	289, 350, 383, 535, 671, 715, 763
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	6 cut(s)	52, 159, 162, 165, 168, 895
BspANI	GGCC	2 cut(s)	63, 158
BspCNI	CTCAG	3 cut(s)	196, 337, 739
BspDI	ATCGAT	1 cut(s)	353
BspPI	GGATC	6 cut(s)	358, 391, 543, 679, 710, 771
BspTNI	GGTCTC	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	23, 847
BssMI	GATC	7 cut(s)	289, 350, 383, 535, 671, 715, 763
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	848
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	643
BstC8I	GCNNGC	1 cut(s)	868
BstDEI	CTNAG	5 cut(s)	183, 324, 423, 567, 726
BstF5I	GGATG	2 cut(s)	571, 937
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	7 cut(s)	292, 353, 386, 538, 674, 718, 766
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	7 cut(s)	289, 350, 383, 535, 671, 715, 763
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 164, 167, 374, 563, 876
BstNI	CCWGG	1 cut(s)	848
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	846
BstV1I	GCAGC	6 cut(s)	235, 417, 489, 554, 691, 952
BstV2I	GAAGAC	2 cut(s)	14, 944
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	63, 158
BsuTUI	ATCGAT	1 cut(s)	353
BtrI	CACGTC	1 cut(s)	914
BtsCI	GGATG	2 cut(s)	571, 937
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	868
CfoI	GCGC	1 cut(s)	618
Cfr13I	GGNCC	1 cut(s)	427
ClaI	ATCGAT	1 cut(s)	353
CseI	GACGC	1 cut(s)	28
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	6 cut(s)	332, 369, 506, 613, 754, 767
DdeI	CTNAG	5 cut(s)	183, 324, 423, 567, 726
DpnI	GATC	7 cut(s)	291, 352, 385, 537, 673, 717, 765
DpnII	GATC	7 cut(s)	289, 350, 383, 535, 671, 715, 763
EaeI	YGGCCR	2 cut(s)	61, 156
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	427
Eco57I	CTGAAG	2 cut(s)	495, 944
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	846
EcoT14I	CCWWGG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	6 cut(s)	335, 372, 509, 616, 757, 770
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	6 cut(s)	331, 368, 505, 612, 753, 766
FauI	CCCGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	558, 944
FspAI	RTGCGCAY	1 cut(s)	617
FspBI	CTAG	2 cut(s)	465, 909
FspI	TGCGCA	1 cut(s)	617
GlaI	GCGC	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	63, 158
HapII	CCGG	1 cut(s)	812
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	618
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	6 cut(s)	335, 372, 509, 616, 757, 770
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HincII	GTYRAC	2 cut(s)	361, 592
HindII	GTYRAC	2 cut(s)	361, 592
HinfI	GANTC	5 cut(s)	10, 173, 226, 818, 922
HpaII	CCGG	1 cut(s)	812
HphI	GGTGA	4 cut(s)	28, 168, 212, 521
Hpy166II	GTNNAC	3 cut(s)	361, 592, 817
Hpy188I	TCNGA	5 cut(s)	186, 278, 327, 529, 686
Hpy188III	TCNNGA	3 cut(s)	239, 348, 675
Hpy8I	GTNNAC	3 cut(s)	361, 592, 817
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	4 cut(s)	49, 83, 124, 526
HpyCH4IV	ACGT	3 cut(s)	642, 803, 913
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 164, 167, 374, 563, 876
HpyF3I	CTNAG	5 cut(s)	183, 324, 423, 567, 726
HpySE526I	ACGT	3 cut(s)	642, 803, 913
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	6 cut(s)	335, 372, 509, 616, 757, 770
HspAI	GCGC	1 cut(s)	616
Kzo9I	GATC	7 cut(s)	289, 350, 383, 535, 671, 715, 763
LmnI	GCTCC	2 cut(s)	455, 897
Lsp1109I	GCAGC	6 cut(s)	235, 417, 489, 554, 691, 952
LweI	GCATC	6 cut(s)	196, 364, 502, 580, 755, 945
MaeI	CTAG	2 cut(s)	465, 909
MaeII	ACGT	3 cut(s)	642, 803, 913
MaeIII	GTNAC	2 cut(s)	16, 496
MalI	GATC	7 cut(s)	291, 352, 385, 537, 673, 717, 765
MboI	GATC	7 cut(s)	289, 350, 383, 535, 671, 715, 763
MboII	GAAGA	5 cut(s)	19, 109, 128, 488, 949
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	452
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	5 cut(s)	95, 608, 720, 807, 883
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	2 cut(s)	4, 812
MnlI	CCTC	8 cut(s)	93, 115, 118, 133, 150, 262, 328, 685
Mox20I	TGGCCA	1 cut(s)	63
Mph1103I	ATGCAT	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	5 cut(s)	57, 438, 861, 944, 976
MslI	CAYNNNNRTG	3 cut(s)	510, 576, 771
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	812
MspR9I	CCNGG	1 cut(s)	848
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	848
MwoI	GCNNNNNNNGC	6 cut(s)	60, 164, 167, 374, 563, 876
NdeII	GATC	7 cut(s)	289, 350, 383, 535, 671, 715, 763
NlaIII	CATG	6 cut(s)	335, 372, 509, 616, 757, 770
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	16, 496
NsbI	TGCGCA	1 cut(s)	617
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PctI	GAATGC	1 cut(s)	581
PfeI	GAWTC	3 cut(s)	173, 226, 922
PleI	GAGTC	2 cut(s)	4, 812
PpsI	GAGTC	2 cut(s)	4, 812
Ppu21I	YACGTR	1 cut(s)	643
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	846
PspGI	CCWGG	1 cut(s)	846
PspPI	GGNCC	1 cut(s)	427
PspPPI	RGGWCCY	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	197
RseI	CAYNNNNRTG	3 cut(s)	510, 576, 771
SaqAI	TTAA	5 cut(s)	57, 438, 861, 944, 976
Sau3AI	GATC	7 cut(s)	289, 350, 383, 535, 671, 715, 763
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	2 cut(s)	4, 812
ScrFI	CCNGG	1 cut(s)	848
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	6 cut(s)	196, 364, 502, 580, 755, 945
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	3 cut(s)	510, 576, 771
Sse9I	AATT	5 cut(s)	95, 608, 720, 807, 883
SsiI	CCGC	6 cut(s)	52, 159, 162, 165, 168, 895
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	2 cut(s)	465, 909
StyD4I	CCNGG	1 cut(s)	846
StyI	CCWWGG	1 cut(s)	23
TaiI	ACGT	3 cut(s)	645, 806, 916
TaqI	TCGA	2 cut(s)	353, 925
TasI	AATT	5 cut(s)	95, 608, 720, 807, 883
TauI	GCSGC	4 cut(s)	161, 164, 167, 170
TfiI	GAWTC	3 cut(s)	173, 226, 922
Tru1I	TTAA	5 cut(s)	57, 438, 861, 944, 976
Tru9I	TTAA	5 cut(s)	57, 438, 861, 944, 976
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	2 cut(s)	16, 496
TseI	GCWGC	6 cut(s)	248, 405, 502, 542, 704, 965
Tsp45I	GTSAC	2 cut(s)	16, 496
TspDTI	ATGAA	3 cut(s)	407, 601, 770
TspRI	CASTG	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	427
XceI	RCATGY	1 cut(s)	372
XspI	CTAG	2 cut(s)	465, 909
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.