Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005740

Physical Location & Seq

Genomic Coordinates Reverse (-)

48614048 .. 48621586

Gene Structure 7539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTGATGATGAGGAGTGTGGTGACGCCGTGGCAGACCTGCCCGCTATTCTCCTTGTTACCCTTAAATGCCCGTAATACCCCTCTCATCCTACGCTCAGCTCCCCACTCTGGTCGTTTATCCATGGCTGCTTCCTCTCAGTCAACGACTTTTCAGAATCAGAATCAGAATGTTCCCGCCGGCGCCGGAGCTGATGACAATATGTTTCAGTTGATTCAGTCTCATCAGGAAAAGGCTTCTCGTCTTCCCCCGATTCAGGAAATCCGAACTCTGCTCGATCGTAGTGTTCGTGGAGTGCTCTCTACTATTTCACAGAAGCATGAGGGTTATCCATCAGGATCCATGGTCGACTTTGCATGTGATGCAGATGGATCTCCCATTTTAGCTGTTAGCAGTTTGGCATTTCATACCAAGGATTTAACTCAAAATCCCAAGTGCTCATTGCTCGTGGCTAGAGATCCTGAGGACAAGACTGATTTGTTGGTCACTCTGCATGGTGATGCAATTCCTGTTTCTGAGAAGGATCAAGCAGCCATTCGGACTGCTTATTTGGCCAGGCATCCCGATGCATTTTGGGTTGACTTTGGTGACTTCCAATTCATGCGTATTGAACCAAAAGTTGTGCGATATGTGTCAGGGGTTGCAACAGCTTTATTAGGATCAGGAGAGTTCAACAACGAGGAGTATAAAGCTGCAAAAGTTGATCCAATTGCTCAATTTTCAAAGCCTGTTGCATCTCACATGAATAAGGATCATGCTGAAGATACAAAAGCCATTGTGCAGCATTCAACTTCAATTCCGGTAGACTTTGCTTACATTTTGGACTTGGATGCCCTTGGTTTTAATGTCAAGGCTGCTTATCAGGGTAATACTTTCAAGCTTCGAATACCGTTTCCCAGACGTGCAGTGGATCGAAAGGATGTGAAGACTCTAATTGTGGAAATGCTTCATGCGGCGAAGCCTCAAGTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Putative_PNPOx Pyrid_oxidase_2

Protein Analysis

324

Amino Acids

35.67

Weight (kDa)

7.16

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNPOx_N	PF01243	86 - 211	1.9e-13	Pyridoxamine 5'-phosphate oxidase
CREG_beta-barrel	PF13883	89 - 212	5.5e-17	CREG, beta-barrel
DUF2470	PF10615	242 - 315	1.5e-17	Domain of unknown function (DUF2470)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03890 AT3G03890
fragaria_vesca	FvH4_1g28200 FvH4_1g28200 FvH4_1g28200 FvH4_1g28200
malus_domestica	MD12G1004000.v1.1 MD12G1004200.v1.1 MD14G1002900.v1.1
prunus_persica	Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1
pyrus_communis	pycom12g00350 pycom14g00080
rosa_chinensis	RchiOBHm_Chr3g0497041
rosa_laevigata	RLG00000022486
rosa_multiflora	Rmu_sc0008737.1_g000002 Rmu_sc0009312.1_g000002 Rmu_sc0035985.1_g000001 Rmu_sc0036941.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388440
rosa_rugosa	Rorug03G0289000 Rorug03G0289100
rosa_samantha	Rh3AG333400 Rh3BG370700 Rh3CG367400 Rh3DG368700
rosa_wichuraiana	Rw3G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	182
AccI	GTMKAC	2 cut(s)	348, 804
AciI	CCGC	3 cut(s)	44, 177, 953
AclWI	GGATC	9 cut(s)	333, 346, 379, 452, 531, 667, 698, 759, 918
AcoI	YGGCCR	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	780
AcyI	GRCGYC	2 cut(s)	26, 183
AfiI	CCNNNNNNNGG	2 cut(s)	110, 256
AgsI	TTSAA	6 cut(s)	611, 673, 723, 789, 795, 877
AjiI	CACGTC	1 cut(s)	902
AjnI	CCWGG	1 cut(s)	554
AluBI	AGCT	6 cut(s)	101, 191, 386, 650, 692, 880
AluI	AGCT	6 cut(s)	101, 191, 386, 650, 692, 880
Alw21I	GWGCWC	2 cut(s)	300, 440
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	9 cut(s)	333, 346, 379, 452, 531, 667, 698, 759, 918
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	5 cut(s)	128, 530, 692, 781, 854
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
Asp700I	GAANNNNTTC	1 cut(s)	945
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	16, 34, 509, 599
AsuII	TTCGAA	1 cut(s)	883
AxyI	CCTNAGG	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	554
BamHI	GGATCC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	182
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	236, 932
Bbv12I	GWGCWC	2 cut(s)	300, 440
BbvI	GCAGC	5 cut(s)	115, 542, 679, 793, 841
BccI	CCATC	2 cut(s)	340, 362
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	6 cut(s)	129, 531, 693, 782, 855, 954
BlpI	GCTNAGC	1 cut(s)	97
BlsI	GCNGC	6 cut(s)	130, 532, 694, 783, 856, 955
Bme1390I	CCNGG	1 cut(s)	556
BmgBI	CACGTC	1 cut(s)	902
BmiI	GGNNCC	2 cut(s)	184, 340
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	6 cut(s)	352, 490, 556, 568, 743, 820
BpiI	GAAGAC	2 cut(s)	236, 932
Bpu1102I	GCTNAGC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	883
BpuEI	CTTGAG	1 cut(s)	948
BsaHI	GRCGYC	2 cut(s)	26, 183
BsaJI	CCNNGG	5 cut(s)	29, 123, 342, 411, 835
BsaWI	WCCGGW	1 cut(s)	799
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 256
Bse118I	RCCGGY	1 cut(s)	179
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	5 cut(s)	29, 123, 342, 411, 835
BseGI	GGATG	4 cut(s)	87, 559, 835, 925
BseLI	CCNNNNNNNGG	2 cut(s)	110, 256
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	4 cut(s)	111, 152, 453, 507
BseRI	GAGGAG	2 cut(s)	28, 695
BseXI	GCAGC	5 cut(s)	115, 542, 679, 793, 841
BsgI	GTGCAG	2 cut(s)	800, 924
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	280
BsiHKAI	GWGCWC	2 cut(s)	300, 440
BsiSI	CCGG	3 cut(s)	180, 186, 800
BslI	CCNNNNNNNGG	2 cut(s)	110, 256
BsmAI	GTCTC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	883
Bsp1286I	GDGCHC	2 cut(s)	300, 440
Bsp143I	GATC	9 cut(s)	277, 338, 371, 457, 523, 659, 703, 751, 910
Bsp1720I	GCTNAGC	1 cut(s)	97
Bsp19I	CCATGG	2 cut(s)	123, 342
BspACI	CCGC	3 cut(s)	44, 177, 953
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	4 cut(s)	110, 151, 454, 508
BspLI	GGNNCC	2 cut(s)	184, 340
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	9 cut(s)	333, 346, 379, 452, 531, 667, 698, 759, 918
BspT104I	TTCGAA	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	5 cut(s)	29, 123, 342, 411, 835
BssMI	GATC	9 cut(s)	277, 338, 371, 457, 523, 659, 703, 751, 910
BssNI	GRCGYC	2 cut(s)	26, 183
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	4 cut(s)	123, 342, 411, 835
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	1 cut(s)	891
BstACI	GRCGYC	2 cut(s)	26, 183
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	883
BstC8I	GCNNGC	2 cut(s)	44, 181
BstDEI	CTNAG	4 cut(s)	97, 138, 462, 516
BstDSI	CCRYGG	3 cut(s)	29, 123, 342
BstF5I	GGATG	4 cut(s)	87, 559, 835, 925
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	9 cut(s)	280, 341, 374, 460, 526, 662, 706, 754, 913
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	9 cut(s)	277, 338, 371, 457, 523, 659, 703, 751, 910
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 551
BstNI	CCWGG	1 cut(s)	556
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	554
BstV1I	GCAGC	5 cut(s)	115, 542, 679, 793, 841
BstV2I	GAAGAC	2 cut(s)	236, 932
BstX2I	RGATCY	3 cut(s)	338, 371, 457
BstYI	RGATCY	3 cut(s)	338, 371, 457
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	3 cut(s)	29, 123, 342
BtrI	CACGTC	1 cut(s)	902
BtsCI	GGATG	4 cut(s)	87, 559, 835, 925
BtsI	GCAGTG	1 cut(s)	912
BtsIMutI	CAGTG	1 cut(s)	912
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	44, 181
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	179
CseI	GACGC	1 cut(s)	34
CviAII	CATG	9 cut(s)	124, 320, 343, 357, 494, 601, 742, 755, 950
DdeI	CTNAG	4 cut(s)	97, 138, 462, 516
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	9 cut(s)	279, 340, 373, 459, 525, 661, 705, 753, 912
DpnII	GATC	9 cut(s)	277, 338, 371, 457, 523, 659, 703, 751, 910
EaeI	YGGCCR	1 cut(s)	552
Eco130I	CCWWGG	4 cut(s)	123, 342, 411, 835
Eco57I	CTGAAG	1 cut(s)	780
Eco81I	CCTNAGG	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	554
EcoT14I	CCWWGG	4 cut(s)	123, 342, 411, 835
EcoT22I	ATGCAT	1 cut(s)	571
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
ErhI	CCWWGG	4 cut(s)	123, 342, 411, 835
FaeI	CATG	9 cut(s)	127, 323, 346, 360, 497, 604, 745, 758, 953
FatI	CATG	9 cut(s)	123, 319, 342, 356, 493, 600, 741, 754, 949
FauI	CCCGC	2 cut(s)	51, 184
FblI	GTMKAC	2 cut(s)	348, 804
Fnu4HI	GCNGC	6 cut(s)	129, 531, 693, 782, 855, 954
FokI	GGATG	4 cut(s)	74, 546, 842, 932
Fsp4HI	GCNGC	6 cut(s)	129, 531, 693, 782, 855, 954
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	6 cut(s)	129, 531, 693, 782, 855, 954
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	3 cut(s)	180, 186, 800
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	2 cut(s)	26, 183
Hin1II	CATG	9 cut(s)	127, 323, 346, 360, 497, 604, 745, 758, 953
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	3 cut(s)	144, 349, 580
HindII	GTYRAC	3 cut(s)	144, 349, 580
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	5 cut(s)	157, 163, 214, 253, 928
HpaII	CCGG	3 cut(s)	180, 186, 800
HphI	GGTGA	4 cut(s)	16, 34, 509, 599
Hpy166II	GTNNAC	4 cut(s)	144, 349, 580, 805
Hpy188I	TCNGA	6 cut(s)	156, 162, 168, 266, 517, 540
Hpy188III	TCNNGA	6 cut(s)	227, 257, 336, 461, 563, 663
Hpy8I	GTNNAC	4 cut(s)	144, 349, 580, 805
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	1 cut(s)	891
HpyCH4IV	ACGT	1 cut(s)	901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 551
HpyF3I	CTNAG	4 cut(s)	97, 138, 462, 516
HpySE526I	ACGT	1 cut(s)	901
Hsp92I	GRCGYC	2 cut(s)	26, 183
Hsp92II	CATG	9 cut(s)	127, 323, 346, 360, 497, 604, 745, 758, 953
HspAI	GCGC	1 cut(s)	183
KasI	GGCGCC	1 cut(s)	182
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Kzo9I	GATC	9 cut(s)	277, 338, 371, 457, 523, 659, 703, 751, 910
LmnI	GCTCC	2 cut(s)	106, 188
Lsp1109I	GCAGC	5 cut(s)	115, 542, 679, 793, 841
LweI	GCATC	6 cut(s)	352, 490, 556, 568, 743, 820
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	4 cut(s)	22, 57, 484, 587
MalI	GATC	9 cut(s)	279, 340, 373, 459, 525, 661, 705, 753, 912
MboI	GATC	9 cut(s)	277, 338, 371, 457, 523, 659, 703, 751, 910
MboII	GAAGA	3 cut(s)	236, 773, 937
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	3 cut(s)	338, 371, 457
MhlI	GDGCHC	2 cut(s)	300, 440
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	6 cut(s)	504, 596, 708, 716, 795, 933
MluNI	TGGCCA	1 cut(s)	554
Mly113I	GGCGCC	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	922
MnlI	CCTC	7 cut(s)	6, 93, 145, 316, 457, 673, 972
Mox20I	TGGCCA	1 cut(s)	554
Mph1103I	ATGCAT	1 cut(s)	571
MreI	CGCCGGCG	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	945
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	4 cut(s)	65, 419, 843, 973
MslI	CAYNNNNRTG	2 cut(s)	498, 564
Msp20I	TGGCCA	1 cut(s)	554
MspI	CCGG	3 cut(s)	180, 186, 800
MspR9I	CCNGG	1 cut(s)	556
MunI	CAATTG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	556
MwoI	GCNNNNNNNGC	2 cut(s)	362, 551
NaeI	GCCGGC	1 cut(s)	181
NarI	GGCGCC	1 cut(s)	183
NcoI	CCATGG	2 cut(s)	123, 342
NdeII	GATC	9 cut(s)	277, 338, 371, 457, 523, 659, 703, 751, 910
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	9 cut(s)	127, 323, 346, 360, 497, 604, 745, 758, 953
NlaIV	GGNNCC	2 cut(s)	184, 340
NmuCI	GTSAC	3 cut(s)	22, 484, 587
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	1 cut(s)	360
NspV	TTCGAA	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PctI	GAATGC	1 cut(s)	784
PdiI	GCCGGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	945
PfeI	GAWTC	4 cut(s)	157, 163, 214, 253
PkrI	GCNGC	6 cut(s)	130, 532, 694, 783, 856, 955
Ple19I	CGATCG	1 cut(s)	280
PleI	GAGTC	1 cut(s)	922
PluTI	GGCGCC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	922
Psp6I	CCWGG	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	2 cut(s)	184, 340
PsuI	RGATCY	3 cut(s)	338, 371, 457
PvuI	CGATCG	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	498, 564
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	65, 419, 843, 973
SatI	GCNGC	6 cut(s)	129, 531, 693, 782, 855, 954
Sau3AI	GATC	9 cut(s)	277, 338, 371, 457, 523, 659, 703, 751, 910
SchI	GAGTC	1 cut(s)	922
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	2 cut(s)	300, 440
SetI	ASST	8 cut(s)	41, 103, 193, 388, 652, 694, 882, 904
SfaNI	GCATC	6 cut(s)	352, 490, 556, 568, 743, 820
SfoI	GGCGCC	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	883
SgrAI	CRCCGGYG	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	498, 564
SmlI	CTYRAG	1 cut(s)	963
SmoI	CTYRAG	1 cut(s)	963
Sse9I	AATT	6 cut(s)	504, 596, 708, 716, 795, 933
SsiI	CCGC	3 cut(s)	44, 177, 953
SspDI	GGCGCC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	4 cut(s)	123, 342, 411, 835
TaaI	ACNGT	1 cut(s)	891
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	4 cut(s)	276, 348, 883, 913
TasI	AATT	6 cut(s)	504, 596, 708, 716, 795, 933
TauI	GCSGC	1 cut(s)	956
TfiI	GAWTC	4 cut(s)	157, 163, 214, 253
Tru1I	TTAA	4 cut(s)	65, 419, 843, 973
Tru9I	TTAA	4 cut(s)	65, 419, 843, 973
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	3 cut(s)	22, 484, 587
TseI	GCWGC	5 cut(s)	128, 530, 692, 781, 854
Tsp45I	GTSAC	3 cut(s)	22, 484, 587
TspDTI	ATGAA	4 cut(s)	395, 589, 758, 938
TspRI	CASTG	1 cut(s)	912
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	904
XmiI	GTMKAC	2 cut(s)	348, 804
XmnI	GAANNNNTTC	1 cut(s)	945
XspI	CTAG	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.