Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005740

Physical Location & Seq

Genomic Coordinates Forward (+)

376478 .. 379479

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGATCAAAATCAAATAGCCATGATGATCAAACGAACTCATCTTCGAGTATACCATCAGAAAGTGCTTCAACTGGAGATGATGCCAATGTTTTTCAGTTGATCCAATCTCATCAGGAAAAGGCTGCTCGGCTTCCCCCAGTTGAGGAAATCCGAACTCTACTTCATCTTAGTTTTCGCGGAACGCTCTCCACTTTTTCTCAGAAGCATGAGGGTTATCCATCAGGATCAATGATTGACTTTGCATGTGATGCAGATCGATCCCCAATATTAGCAGTTAGCAGCTTGGCAGTTCATACAAAGGACCTAGCCCGTAATCCCAAGTGCTCATTGCTTGTGGCTAAAGACACGACTGATTTGGTGGTCACGCTGCATGGTGATGCTATTCCTGTTTCCGAGAAGGATCAAGCAGCCATACGCACTGCATATTTGGCTAAGCATCCCAATGCATTTTCGGTTGACTTTGGCGACTTCCAATTCATGCGCATTGAACCAAAAGTTGTGCGATACGTGTCAGGGGTTGCAACAGCCTTGTTAGGATCAGGAGTTCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Putative_PNPOx Pyrid_oxidase_2

Protein Analysis

186

Amino Acids

20.04

Weight (kDa)

6.65

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03890 AT3G03890
fragaria_vesca	FvH4_1g28200 FvH4_1g28200 FvH4_1g28200 FvH4_1g28200
malus_domestica	MD12G1004000.v1.1 MD12G1004200.v1.1 MD14G1002900.v1.1
prunus_persica	Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1 Prupe.7G004600_v2.0.a1
pyrus_communis	pycom12g00350 pycom14g00080
rosa_chinensis	RchiOBHm_Chr3g0497041
rosa_laevigata	RLG00000022486
rosa_multiflora	Rmu_sc0008737.1_g000002 Rmu_sc0009312.1_g000002 Rmu_sc0035985.1_g000001 Rmu_sc0036941.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388440
rosa_rugosa	Rorug03G0289000 Rorug03G0289100
rosa_samantha	Rh3AG333400 Rh3BG370700 Rh3CG367400 Rh3DG368700
rosa_wichuraiana	Rw3G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	180
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	5 cut(s)	97, 235, 255, 411, 547
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	2 cut(s)	72, 491
AloI	GAACNNNNNNTCC	1 cut(s)	531
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw21I	GWGCWC	1 cut(s)	329
AlwI	GGATC	5 cut(s)	97, 235, 255, 411, 547
ApeKI	GCWGC	4 cut(s)	125, 282, 370, 410
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	4 cut(s)	112, 294, 357, 422
BccI	CCATC	2 cut(s)	64, 229
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	4 cut(s)	126, 283, 371, 411
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	4 cut(s)	127, 284, 372, 412
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	4 cut(s)	73, 241, 370, 448
BmuI	ACTGGG	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	511
BsaBI	GATNNNNATC	2 cut(s)	10, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	79, 140
Bse3DI	GCAATG	1 cut(s)	329
Bse8I	GATNNNNATC	2 cut(s)	10, 255
BseCI	ATCGAT	1 cut(s)	259
BseGI	GGATG	1 cut(s)	439
BseJI	GATNNNNATC	2 cut(s)	10, 255
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	2 cut(s)	79, 140
BseXI	GCAGC	4 cut(s)	112, 294, 357, 422
Bsh1236I	CGCG	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	8 cut(s)	5, 28, 102, 227, 256, 260, 403, 539
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	180
BspPI	GGATC	5 cut(s)	97, 235, 255, 411, 547
BsrDI	GCAATG	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	79, 140
BssMI	GATC	8 cut(s)	5, 28, 102, 227, 256, 260, 403, 539
BssNAI	GTATAC	1 cut(s)	53
Bst1107I	GTATAC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	170, 201, 435
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	8 cut(s)	8, 31, 105, 230, 259, 263, 406, 542
BstMBI	GATC	8 cut(s)	5, 28, 102, 227, 256, 260, 403, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 431
BstNSI	RCATGY	1 cut(s)	249
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	112, 294, 357, 422
BstZ17I	GTATAC	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	259
BsuTUI	ATCGAT	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	259
CviAII	CATG	5 cut(s)	23, 209, 246, 374, 481
CviJI	RGCY	9 cut(s)	21, 125, 133, 285, 311, 341, 413, 434, 530
CviKI_1	RGCY	9 cut(s)	21, 125, 133, 285, 311, 341, 413, 434, 530
DdeI	CTNAG	3 cut(s)	170, 201, 435
DpnI	GATC	8 cut(s)	7, 30, 104, 229, 258, 262, 405, 541
DpnII	GATC	8 cut(s)	5, 28, 102, 227, 256, 260, 403, 539
Eco47I	GGWCC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	451
FaeI	CATG	5 cut(s)	26, 212, 249, 377, 484
FaiI	YATR	9 cut(s)	24, 53, 210, 247, 297, 375, 416, 427, 482
FatI	CATG	5 cut(s)	22, 208, 245, 373, 480
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	4 cut(s)	126, 283, 371, 411
FokI	GGATG	1 cut(s)	426
Fsp4HI	GCNGC	4 cut(s)	126, 283, 371, 411
FspAI	RTGCGCAY	1 cut(s)	485
FspBI	CTAG	1 cut(s)	308
FspI	TGCGCA	1 cut(s)	485
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	4 cut(s)	126, 283, 371, 411
GsuI	CTGGAG	1 cut(s)	96
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	5 cut(s)	26, 212, 249, 377, 484
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	53, 460
Hpy188I	TCNGA	5 cut(s)	61, 155, 204, 397, 552
Hpy188III	TCNNGA	3 cut(s)	116, 225, 543
Hpy8I	GTNNAC	2 cut(s)	53, 460
HpyAV	CCTTC	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	6 cut(s)	245, 254, 373, 425, 449, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 431
HpyF3I	CTNAG	3 cut(s)	170, 201, 435
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	5 cut(s)	26, 212, 249, 377, 484
HspAI	GCGC	1 cut(s)	484
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	8 cut(s)	5, 28, 102, 227, 256, 260, 403, 539
LpnPI	CCDG	7 cut(s)	60, 101, 153, 210, 402, 501, 528
Lsp1109I	GCAGC	4 cut(s)	112, 294, 357, 422
LweI	GCATC	4 cut(s)	73, 241, 370, 448
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	8 cut(s)	7, 30, 104, 229, 258, 262, 405, 541
MboI	GATC	8 cut(s)	5, 28, 102, 227, 256, 260, 403, 539
MboII	GAAGA	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	1 cut(s)	476
MnlI	CCTC	2 cut(s)	139, 205
Mph1103I	ATGCAT	1 cut(s)	451
MslI	CAYNNNNRTG	2 cut(s)	378, 444
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	251, 431
NdeII	GATC	8 cut(s)	5, 28, 102, 227, 256, 260, 403, 539
NlaIII	CATG	5 cut(s)	26, 212, 249, 377, 484
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	364
NsbI	TGCGCA	1 cut(s)	485
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	127, 284, 372, 412
Ppu21I	YACGTR	1 cut(s)	511
PpuMI	RGGWCCY	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	304
PspPPI	RGGWCCY	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	378, 444
SatI	GCNGC	4 cut(s)	126, 283, 371, 411
Sau3AI	GATC	8 cut(s)	5, 28, 102, 227, 256, 260, 403, 539
Sau96I	GGNCC	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	3 cut(s)	287, 309, 513
SfaNI	GCATC	4 cut(s)	73, 241, 370, 448
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	2 cut(s)	378, 444
Sse9I	AATT	1 cut(s)	476
SsiI	CCGC	1 cut(s)	180
SspI	AATATT	1 cut(s)	270
SspMI	CTAG	1 cut(s)	308
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	2 cut(s)	47, 259
TasI	AATT	1 cut(s)	476
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	4 cut(s)	125, 282, 370, 410
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	155, 284, 469
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	304
XceI	RCATGY	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.