Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008391

Physical Location & Seq

Genomic Coordinates Reverse (-)

21349378 .. 21352508

Gene Structure 3131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGGGTTTTTCCCAAGACACTTTGAAAGAGCCACCCAATGTTAATGTATCACACACTTGCTCCTCTCTAGTCCCAGATCACTACTGTCACCGTAATGAGTTCACACTTAAAACCATTCTGAACAAGATGCTTAGGGAGCTTGGCCTGTCCTGCTTTCTTCCTCCACCTCCACAAACAAGAACAACCCAAAATGAAGATCAAAAGAAGATGAATTTGGAGCACAACAAGGCATGGCTGCTTGCAGAGTCAGGTGGGTGTGGAGCAGACCTGACTGGTGCTGATCCACACTCGGTTCACTCCTCTTTCAGGTTCAGCTTCTGCTCTCAAGTTGAGCTCGACTCCTTGAACATGACCTCTTCTTCTGCTGCCACTGTTCTCATGGTCAATTTGGACAATGGTTTGTGCGAGTCCAAAGCTAAAGAATTGAAATGGAGGAGATTCGAGTCGTTAGAGAGAAGCATATCCCCAATGGCCAACACTTTGGTTAGATTCAGCTATGCCGAAATTCGTGCAGCTACTCGCAATTTCTCACAAGGCAGAGTTTTGGGGAGAGGAGCTTTGAGCTGTGTGTTTAGGGGTAGAGTTGGGATTTTGAGGACAGTTGTGGCAGTTAAGCGACTGGACAAGGAAGATAAGGAGTCTTCTAAGGCGTTTTGTAGAGAGTTGATGATTTCTAGCTCTCTTCACAACCCAAATGTAACGCCTCTTCTGGGGTTCTGCATAGATCCAGAGGAGGGCTTGTTTTTGGTTTACAAGTATGTCTCTGGGGGAAGCCTAGAGCGTCACTTGCATGAGAAAAAGAGGGGAGTGCAGGGTACTTCAACACTTTCTTGGTCTGTAAGGCACAAGGTTGCAATAGGTATAGCAGAGGCCATTGCATACCTACATAATGGAACCGAAAAGTGCATTGTGCACAGAGACATCAAACCCTCAAACATTCTCCTTTCTTCAAAGAAAACACCCAAGTTATGTGATTTTGGATTAGCCACATGGACTTCAGCACCTTCGGTCCCTTTCCTTTGCAAAACGGTCAAAGGAACATTTGGTTACTTAGCTCCTGAGTATTTCCAGCATGGAAAGATATCGGATAAAACTGATGTTTATGCTTTTGGTGTCGTCTTGCTGGAGTTGATAACTGGAAGGAAGCCAATCGAAGCCAGAAGGCCTCAAGGAGAAGAAAACTTGGTCCTGTGGGCAAAACCCCTCTTGCATAAAGGTAAAGGAGCTATTGAAGAATTGCTTGATCCTCGGCTAAAATGCAGTTCGACGAATCCAAATCAAATAGGACGGATGATTGAAGCTGCAGCCGCTTGCATAACTAGTGAAGAATCTAGGAGGCCAAACATTGGTGAGGTAGTTGCAATACTTAAAGGGGAAGAAGAGCCTATTTACTCCAAGAGAAAGAAGTCTGGTTTTCTGGGAAATGGGTTGGTCATTGATTGTTATTCCCAATTACAGCAAACAAATAGTGAGATGAGGAGTCACTTAGCTTTGGCTATGCTTGGAGTTTCTGAGCTGGAGGATGATGATCACCTTTACGGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

516

Amino Acids

57.17

Weight (kDa)

8.76

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	177 - 399	2.2e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	178 - 426	1.3e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66460 AT1G66460 AT1G66460 AT5G37790
fragaria_vesca	FvH4_1g28910 FvH4_1g28910
malus_domestica	MD09G1262600.v1.1 MD17G1257500.v1.1
prunus_persica	Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1
pyrus_communis	pycom09g17690 pycom17g25960
rosa_chinensis	RchiOBHm_Chr3g0493411
rosa_laevigata	RLG00000022715
rosa_multiflora	Rmu_sc0000828.1_g000022
rosa_roxburghii	Rroxscaffold_6G00391600
rosa_rugosa	Rorug03G0260900
rosa_samantha	Rh3AG310000 Rh3BG346100 Rh3CG343500 Rh3DG345100
rosa_wichuraiana	Rw3G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1346
AciI	CCGC	1 cut(s)	1308
AclWI	GGATC	3 cut(s)	275, 719, 1238
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	2 cut(s)	211, 504
AcuI	CTGAAG	1 cut(s)	981
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	4 cut(s)	306, 710, 734, 1346
AgsI	TTSAA	7 cut(s)	25, 346, 427, 822, 951, 1232, 1298
AhlI	ACTAGT	1 cut(s)	1319
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
Alw21I	GWGCWC	3 cut(s)	222, 336, 915
Alw26I	GTCTC	2 cut(s)	766, 912
Alw44I	GTGCAC	1 cut(s)	911
AlwI	GGATC	3 cut(s)	275, 719, 1238
AlwNI	CAGNNNCTG	1 cut(s)	318
AoxI	GGCC	5 cut(s)	142, 471, 870, 1163, 1337
ApaLI	GTGCAC	1 cut(s)	911
ApeKI	GCWGC	5 cut(s)	235, 365, 512, 1301, 1304
ApoI	RAATTY	2 cut(s)	211, 504
AspS9I	GGNCC	2 cut(s)	1009, 1186
AsuHPI	GGTGA	3 cut(s)	80, 1361, 1523
AvaII	GGWCC	2 cut(s)	1009, 1186
BaeGI	GKGCMC	1 cut(s)	915
BalI	TGGCCA	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	336
BarI	GAAGNNNNNNTAC	2 cut(s)	690, 722
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	3 cut(s)	222, 336, 915
BbvI	GCAGC	5 cut(s)	222, 352, 524, 1288, 1316
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BclI	TGATCA	1 cut(s)	1528
BcoDI	GTCTC	2 cut(s)	766, 912
BcuI	ACTAGT	1 cut(s)	1319
BfaI	CTAG	5 cut(s)	68, 675, 776, 1320, 1332
BfmI	CTRYAG	1 cut(s)	1302
BisI	GCNGC	6 cut(s)	236, 366, 513, 1302, 1305, 1308
BlsI	GCNGC	6 cut(s)	237, 367, 514, 1303, 1306, 1309
Bme18I	GGWCC	2 cut(s)	1009, 1186
BmgT120I	GGNCC	2 cut(s)	1009, 1186
BmiI	GGNNCC	2 cut(s)	895, 1011
BmsI	GCATC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	633
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpmI	CTGGAG	2 cut(s)	1145, 1538
Bpu10I	CCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	2 cut(s)	309, 1152
BsaBI	GATNNNNATC	1 cut(s)	1527
BsaJI	CCNNGG	1 cut(s)	1247
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 725, 755
Bsc4I	CCNNNNNNNGG	4 cut(s)	306, 710, 734, 1346
Bse1I	ACTGG	3 cut(s)	277, 624, 1141
Bse3DI	GCAATG	1 cut(s)	873
Bse8I	GATNNNNATC	1 cut(s)	1527
BseDI	CCNNGG	1 cut(s)	1247
BseGI	GGATG	2 cut(s)	1296, 1528
BseJI	GATNNNNATC	1 cut(s)	1527
BseLI	CCNNNNNNNGG	4 cut(s)	306, 710, 734, 1346
BseMI	GCAATG	1 cut(s)	873
BseMII	CTCAG	2 cut(s)	1050, 1503
BseNI	ACTGG	3 cut(s)	277, 624, 1141
BseRI	GAGGAG	6 cut(s)	52, 289, 448, 567, 746, 1492
BseSI	GKGCMC	1 cut(s)	915
BseXI	GCAGC	5 cut(s)	222, 352, 524, 1288, 1316
BsgI	GTGCAG	2 cut(s)	531, 830
BshFI	GGCC	5 cut(s)	144, 473, 872, 1165, 1339
BsiHKAI	GWGCWC	3 cut(s)	222, 336, 915
BslFI	GGGAC	2 cut(s)	56, 995
BslI	CCNNNNNNNGG	4 cut(s)	306, 710, 734, 1346
BsmAI	GTCTC	2 cut(s)	766, 912
BsmFI	GGGAC	2 cut(s)	56, 995
BsnI	GGCC	5 cut(s)	144, 473, 872, 1165, 1339
Bsp1286I	GDGCHC	3 cut(s)	222, 336, 915
Bsp143I	GATC	6 cut(s)	76, 196, 280, 724, 1243, 1528
BspACI	CCGC	1 cut(s)	1308
BspANI	GGCC	5 cut(s)	144, 473, 872, 1165, 1339
BspCNI	CTCAG	2 cut(s)	1051, 1504
BspLI	GGNNCC	2 cut(s)	895, 1011
BspMAI	CTGCAG	1 cut(s)	1306
BspPI	GGATC	3 cut(s)	275, 719, 1238
BspQI	GCTCTTC	1 cut(s)	1374
BsrDI	GCAATG	1 cut(s)	873
BsrI	ACTGG	3 cut(s)	277, 624, 1141
BssECI	CCNNGG	1 cut(s)	1247
BssMI	GATC	6 cut(s)	76, 196, 280, 724, 1243, 1528
Bst4CI	ACNGT	5 cut(s)	86, 92, 373, 601, 1030
Bst6I	CTCTTC	4 cut(s)	361, 687, 711, 1374
BstC8I	GCNNGC	2 cut(s)	240, 1312
BstDEI	CTNAG	6 cut(s)	131, 645, 1051, 1059, 1486, 1512
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	1296, 1528
BstKTI	GATC	6 cut(s)	79, 199, 283, 727, 1246, 1531
BstMAI	GTCTC	2 cut(s)	766, 912
BstMBI	GATC	6 cut(s)	76, 196, 280, 724, 1243, 1528
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 150, 787, 1307
BstSFI	CTRYAG	1 cut(s)	1302
BstSLI	GKGCMC	1 cut(s)	915
BstV1I	GCAGC	5 cut(s)	222, 352, 524, 1288, 1316
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	724
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	724
BsuRI	GGCC	5 cut(s)	144, 473, 872, 1165, 1339
BtsCI	GGATG	2 cut(s)	1296, 1528
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	240, 1312
CaiI	CAGNNNCTG	1 cut(s)	318
Cfr13I	GGNCC	2 cut(s)	1009, 1186
CseI	GACGC	1 cut(s)	770
Csp6I	GTAC	1 cut(s)	816
CviAII	CATG	6 cut(s)	231, 349, 379, 791, 990, 1073
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	6 cut(s)	131, 645, 1051, 1059, 1486, 1512
DpnI	GATC	6 cut(s)	78, 198, 282, 726, 1245, 1530
DpnII	GATC	6 cut(s)	76, 196, 280, 724, 1243, 1528
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	4 cut(s)	361, 687, 711, 1374
EarI	CTCTTC	4 cut(s)	361, 687, 711, 1374
Ecl136II	GAGCTC	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	1165
Eco24I	GRGCYC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	1083
Eco47I	GGWCC	2 cut(s)	1009, 1186
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	981
EcoICRI	GAGCTC	1 cut(s)	334
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	1083
EcoT38I	GRGCYC	1 cut(s)	336
FaeI	CATG	6 cut(s)	234, 352, 382, 794, 993, 1076
FalI	AAGNNNNNCTT	2 cut(s)	1224, 1256
FaqI	GGGAC	2 cut(s)	56, 995
FatI	CATG	6 cut(s)	230, 348, 378, 790, 989, 1072
FbaI	TGATCA	1 cut(s)	1528
Fnu4HI	GCNGC	6 cut(s)	236, 366, 513, 1302, 1305, 1308
FokI	GGATG	2 cut(s)	1303, 1535
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	6 cut(s)	236, 366, 513, 1302, 1305, 1308
FspBI	CTAG	5 cut(s)	68, 675, 776, 1320, 1332
GluI	GCNGC	6 cut(s)	236, 366, 513, 1302, 1305, 1308
GsuI	CTGGAG	2 cut(s)	1145, 1538
HaeIII	GGCC	5 cut(s)	144, 473, 872, 1165, 1339
HgaI	GACGC	1 cut(s)	770
Hin1II	CATG	6 cut(s)	234, 352, 382, 794, 993, 1076
HphI	GGTGA	3 cut(s)	80, 1361, 1523
Hpy166II	GTNNAC	4 cut(s)	102, 295, 751, 913
Hpy188I	TCNGA	3 cut(s)	120, 1087, 1513
Hpy188III	TCNNGA	2 cut(s)	728, 1058
Hpy8I	GTNNAC	4 cut(s)	102, 295, 751, 913
Hpy99I	CGWCG	1 cut(s)	1270
HpyAV	CCTTC	3 cut(s)	1014, 1134, 1155
HpyCH4III	ACNGT	5 cut(s)	86, 92, 373, 601, 1030
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 150, 787, 1307
HpyF3I	CTNAG	6 cut(s)	131, 645, 1051, 1059, 1486, 1512
Hsp92II	CATG	6 cut(s)	234, 352, 382, 794, 993, 1076
Ksp22I	TGATCA	1 cut(s)	1528
Kzo9I	GATC	6 cut(s)	76, 196, 280, 724, 1243, 1528
LguI	GCTCTTC	1 cut(s)	1374
LmnI	GCTCC	7 cut(s)	65, 136, 217, 260, 554, 1060, 1223
Lsp1109I	GCAGC	5 cut(s)	222, 352, 524, 1288, 1316
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	5 cut(s)	68, 675, 776, 1320, 1332
MaeIII	GTNAC	5 cut(s)	86, 697, 782, 1046, 1481
MalI	GATC	6 cut(s)	78, 198, 282, 726, 1245, 1530
MboI	GATC	6 cut(s)	76, 196, 280, 724, 1243, 1528
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	3 cut(s)	222, 336, 915
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	7 cut(s)	211, 385, 422, 504, 523, 1235, 1451
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	6 cut(s)	254, 332, 416, 452, 647, 1489
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	4 cut(s)	42, 108, 612, 1368
MslI	CAYNNNNRTG	2 cut(s)	93, 789
Msp20I	TGGCCA	1 cut(s)	473
MwoI	GCNNNNNNNGC	4 cut(s)	136, 150, 787, 1307
NdeII	GATC	6 cut(s)	76, 196, 280, 724, 1243, 1528
NlaIII	CATG	6 cut(s)	234, 352, 382, 794, 993, 1076
NlaIV	GGNNCC	2 cut(s)	895, 1011
NmeAIII	GCCGAG	1 cut(s)	1228
NmuCI	GTSAC	3 cut(s)	86, 782, 1481
PceI	AGGCCT	1 cut(s)	1165
PciSI	GCTCTTC	1 cut(s)	1374
PfeI	GAWTC	4 cut(s)	438, 489, 1270, 1328
PflMI	CCANNNNNTGG	1 cut(s)	1346
PkrI	GCNGC	6 cut(s)	237, 367, 514, 1303, 1306, 1309
PleI	GAGTC	6 cut(s)	253, 332, 415, 451, 646, 1488
PpsI	GAGTC	6 cut(s)	253, 332, 415, 451, 646, 1488
Psp124BI	GAGCTC	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	895, 1011
PspPI	GGNCC	2 cut(s)	1009, 1186
PstI	CTGCAG	1 cut(s)	1306
PstNI	CAGNNNCTG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	724
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
RseI	CAYNNNNRTG	2 cut(s)	93, 789
SacI	GAGCTC	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	1374
SaqAI	TTAA	4 cut(s)	42, 108, 612, 1368
SatI	GCNGC	6 cut(s)	236, 366, 513, 1302, 1305, 1308
Sau3AI	GATC	6 cut(s)	76, 196, 280, 724, 1243, 1528
Sau96I	GGNCC	2 cut(s)	1009, 1186
SchI	GAGTC	6 cut(s)	254, 332, 416, 452, 647, 1489
SduI	GDGCHC	3 cut(s)	222, 336, 915
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	1302
SinI	GGWCC	2 cut(s)	1009, 1186
SmiMI	CAYNNNNRTG	2 cut(s)	93, 789
SmlI	CTYRAG	2 cut(s)	324, 1167
SmoI	CTYRAG	2 cut(s)	324, 1167
SpeI	ACTAGT	1 cut(s)	1319
Sse9I	AATT	7 cut(s)	211, 385, 422, 504, 523, 1235, 1451
SseBI	AGGCCT	1 cut(s)	1165
SsiI	CCGC	1 cut(s)	1308
SspMI	CTAG	5 cut(s)	68, 675, 776, 1320, 1332
SstI	GAGCTC	1 cut(s)	336
StuI	AGGCCT	1 cut(s)	1165
TaaI	ACNGT	5 cut(s)	86, 92, 373, 601, 1030
TaqI	TCGA	4 cut(s)	336, 441, 1152, 1265
TaqII	GACCGA	1 cut(s)	997
TasI	AATT	7 cut(s)	211, 385, 422, 504, 523, 1235, 1451
TauI	GCSGC	1 cut(s)	1310
TfiI	GAWTC	4 cut(s)	438, 489, 1270, 1328
Tru1I	TTAA	4 cut(s)	42, 108, 612, 1368
Tru9I	TTAA	4 cut(s)	42, 108, 612, 1368
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	3 cut(s)	86, 782, 1481
TseI	GCWGC	5 cut(s)	235, 365, 512, 1301, 1304
Tsp45I	GTSAC	3 cut(s)	86, 782, 1481
TspDTI	ATGAA	2 cut(s)	207, 224
TspGWI	ACGGA	1 cut(s)	1303
TspRI	CASTG	1 cut(s)	376
Van91I	CCANNNNNTGG	1 cut(s)	1346
VneI	GTGCAC	1 cut(s)	911
VpaK11BI	GGWCC	2 cut(s)	1009, 1186
XagI	CCTNNNNNAGG	1 cut(s)	304
XapI	RAATTY	2 cut(s)	211, 504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XspI	CTAG	5 cut(s)	68, 675, 776, 1320, 1332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.