Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008391

Physical Location & Seq

Genomic Coordinates Forward (+)

31813587 .. 31816583

Gene Structure 2997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1257500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGGGTTACTCCCCAGGCACTTTCACCTACTCCAGAGAGCCACCCAATGCTCCTCCTCCTCTTCCTCTACACACTTCCTCCTCTTTAGCCATACATCACCATTACTACAATGACCACAGACTCAAAACCCTTGTAAAGAAAATGTTCAGGCAGCTTGGTCTGGCCTGCTTTCTCCCACCTCCTCGCCGGAGGACGACCAACCAGAAGACCCCATTTGATGACGACGGCAACAATGGCGGCAACAGCAGCAACAACAACAAGAAGATAAATTTAGAGCACAACAAAGCGTGGCTGCTGGCGGAGTCCGGCGGGTGTGGGGCGGAGTTGGCAAATGCCGATCCCCAATCGGTTCACTCCTCTTTCAGGTTCAGCTTCTGCTCTCAGGTCGAGCTGGAATCCATGAACATGAGCTCCTCCGCCGCTGCAACGGTTCTAATGGTGAATTTGGGAGATGGGTTGTCTGAATCCAAAGCTAAAGAGATGCAATGGAGGAGATTTGAGTCGTTGGAGAGGAGCATATCCCCAGTGGCTCACACGCTGATCAGATTTAGCTACGGTGAAATTCTCGCAGCTACTCGTAATTTTTCGAAAGGTAGAGTTTTAGGGAGAGGAGCTTTGAGCTGTGTGTTTAGAGGCAGAGTTGGGATTTTGAGAACTGCTGTGGCGATCAAGCGATTAGACAAGGAAGATAAAGAGTCTGCTAAGGCATTTTGTAGAGAGCTGATGATTTCTTGCTCTCTTCACCACCCAAATGTAACACCTCTTGCGGGATTTTGCATCGATCCAGAGGAGGGTTTGTTTTTGGTTTATAAGTATGTCTCCGGGGGAAGCTTGGAGTGTCATTTACATGAGAAAAAGAGGGGAGTTAAGGGCTCTGCAACACTTCCTTGGTTCGTAAGGCACAAGGTTGCTATTGGAATTGCTGAGGCAATTGCATATCTGCATAATGGAACTGAACGCTGTATTGTTCACAGAGATATCAAACCCTCGAACATTCTCCTTTCGTCCAAGAAAACTGCCAGGCTATGTGATTTTGGATTAGCCACTTGGACTTCCGCACCTTCCGTCCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGTTACTTGGCTCCTGAGTATTTCCAGCACGGGAAAATATCCGATAAAACTGACGTGTATGCTTTTGGGGTGGTCTTGCTGGAATTGATAACTGGTAGGAAGCCGATTGAAGAAAGAAGGCCACAAGGAGAAGAAAACTTGGTTCTATGGGCAAAGCCCCTCTTGTGTAAAGGGAAAGGAGCTATTGAGGAGCTGCTTGATCCACATATAAAATGCACTTCGAGAAATTCAAATCAAATAGCCCGGATGATTGAAGCTGCAGCTGCCTGCATAACGAGTGAAGAATCCCGAAGACCGAGCATTTGTGAGATAATGGCAATACTTAAAGGTGAAGAAGAATGTATCGTTTCCAAGAGGAAGAGGCCTAGTTTTCTGGGGAGTGGACTGGTCATTGATTGTCATTCTCAGTTACAGCAAACGAAAAGCGAGGTGCAGAATCACCTAGCTTTGGCTATGTTAGGAGTTTCCGAGTTTGAAGACGATGATCACCTTTGCGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

535

Amino Acids

59.11

Weight (kDa)

8.86

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	196 - 472	7e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	198 - 471	5.1e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66460 AT1G66460 AT1G66460 AT5G37790
fragaria_vesca	FvH4_1g28910 FvH4_1g28910
malus_domestica	MD09G1262600.v1.1 MD17G1257500.v1.1
prunus_persica	Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1
pyrus_communis	pycom09g17690 pycom17g25960
rosa_chinensis	RchiOBHm_Chr3g0493411
rosa_laevigata	RLG00000022715
rosa_multiflora	Rmu_sc0000828.1_g000022
rosa_roxburghii	Rroxscaffold_6G00391600
rosa_rugosa	Rorug03G0260900
rosa_samantha	Rh3AG310000 Rh3BG346100 Rh3CG343500 Rh3DG345100
rosa_wichuraiana	Rw3G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AciI	CCGC	8 cut(s)	237, 299, 309, 320, 417, 420, 767, 1056
AclWI	GGATC	3 cut(s)	332, 776, 1295
AcsI	RAATTY	4 cut(s)	268, 442, 561, 1327
AfiI	CCNNNNNNNGG	4 cut(s)	363, 767, 791, 1549
AflIII	ACRYGT	1 cut(s)	1155
AgsI	TTSAA	4 cut(s)	1211, 1332, 1355, 1577
AjiI	CACGTC	1 cut(s)	1156
AjnI	CCWGG	2 cut(s)	13, 1019
AloI	GAACNNNNNNTCC	2 cut(s)	395, 427
Alw21I	GWGCWC	2 cut(s)	279, 413
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	3 cut(s)	332, 776, 1295
AlwNI	CAGNNNCTG	1 cut(s)	375
AoxI	GGCC	3 cut(s)	162, 1220, 1463
ApeKI	GCWGC	9 cut(s)	151, 246, 292, 422, 569, 1294, 1358, 1361, 1364
ApoI	RAATTY	4 cut(s)	268, 442, 561, 1327
ArsI	GACNNNNNNTTYG	2 cut(s)	1386, 1418
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	1598
AsuC2I	CCSGG	2 cut(s)	823, 1345
AsuHPI	GGTGA	8 cut(s)	16, 89, 451, 569, 734, 1442, 1532, 1580
AsuII	TTCGAA	1 cut(s)	587
BanII	GRGCYC	2 cut(s)	413, 875
BbsI	GAAGAC	3 cut(s)	212, 1399, 1584
Bbv12I	GWGCWC	2 cut(s)	279, 413
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	9 cut(s)	163, 258, 279, 409, 581, 1281, 1345, 1351, 1373
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	15, 1021
BclI	TGATCA	2 cut(s)	540, 1585
BcnI	CCSGG	2 cut(s)	823, 1345
BcoDI	GTCTC	1 cut(s)	823
BfaI	CTAG	2 cut(s)	1467, 1544
BfmI	CTRYAG	1 cut(s)	1359
Bme1390I	CCNGG	4 cut(s)	15, 823, 1021, 1345
BmgBI	CACGTC	1 cut(s)	1156
BmiI	GGNNCC	1 cut(s)	1113
BmrFI	CCNGG	4 cut(s)	15, 823, 1021, 1345
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	471, 786
BmuI	ACTGGG	1 cut(s)	518
BpiI	GAAGAC	3 cut(s)	212, 1399, 1584
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	2 cut(s)	702, 924
Bpu14I	TTCGAA	1 cut(s)	587
BpuMI	CCSGG	2 cut(s)	823, 1345
Bsa29I	ATCGAT	1 cut(s)	780
BsaJI	CCNNGG	3 cut(s)	13, 822, 887
BsaXI	ACNNNNNCTCC	6 cut(s)	62, 92, 395, 425, 782, 812
Bsc4I	CCNNNNNNNGG	4 cut(s)	363, 767, 791, 1549
Bse1I	ACTGG	3 cut(s)	524, 1198, 1491
Bse3DI	GCAATG	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	15, 1021
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	3 cut(s)	13, 822, 887
BseGI	GGATG	1 cut(s)	1353
BseLI	CCNNNNNNNGG	4 cut(s)	363, 767, 791, 1549
BseMI	GCAATG	1 cut(s)	491
BseMII	CTCAG	4 cut(s)	395, 915, 1107, 1520
BseNI	ACTGG	3 cut(s)	524, 1198, 1491
BseXI	GCAGC	9 cut(s)	163, 258, 279, 409, 581, 1281, 1345, 1351, 1373
BsgI	GTGCAG	1 cut(s)	1553
BshFI	GGCC	3 cut(s)	164, 1222, 1465
BshVI	ATCGAT	1 cut(s)	780
BsiHKAI	GWGCWC	2 cut(s)	279, 413
BsiSI	CCGG	4 cut(s)	187, 306, 822, 1345
BslFI	GGGAC	1 cut(s)	1052
BslI	CCNNNNNNNGG	4 cut(s)	363, 767, 791, 1549
BsmAI	GTCTC	1 cut(s)	823
BsmFI	GGGAC	1 cut(s)	1052
BsnI	GGCC	3 cut(s)	164, 1222, 1465
Bsp119I	TTCGAA	1 cut(s)	587
Bsp1286I	GDGCHC	3 cut(s)	279, 413, 875
Bsp143I	GATC	6 cut(s)	337, 540, 666, 781, 1300, 1585
BspACI	CCGC	8 cut(s)	237, 299, 309, 320, 417, 420, 767, 1056
BspANI	GGCC	3 cut(s)	164, 1222, 1465
BspCNI	CTCAG	4 cut(s)	394, 916, 1108, 1519
BspDI	ATCGAT	1 cut(s)	780
BspLI	GGNNCC	1 cut(s)	1113
BspMAI	CTGCAG	1 cut(s)	1363
BspPI	GGATC	3 cut(s)	332, 776, 1295
BspT104I	TTCGAA	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	491
BsrI	ACTGG	3 cut(s)	524, 1198, 1491
BssECI	CCNNGG	3 cut(s)	13, 822, 887
BssMI	GATC	6 cut(s)	337, 540, 666, 781, 1300, 1585
BssT1I	CCWWGG	1 cut(s)	887
Bst2UI	CCWGG	2 cut(s)	15, 1021
Bst4CI	ACNGT	3 cut(s)	430, 557, 1087
Bst6I	CTCTTC	3 cut(s)	66, 744, 1454
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	166, 297, 1369
BstDEI	CTNAG	5 cut(s)	381, 702, 924, 1116, 1506
BstENI	CCTNNNNNAGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	1353
BstHHI	GCGC	1 cut(s)	1598
BstKTI	GATC	6 cut(s)	340, 543, 669, 784, 1303, 1588
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	6 cut(s)	337, 540, 666, 781, 1300, 1585
BstMWI	GCNNNNNNNGC	5 cut(s)	234, 243, 246, 326, 1364
BstNI	CCWGG	2 cut(s)	15, 1021
BstSCI	CCNGG	4 cut(s)	13, 821, 1019, 1343
BstSFI	CTRYAG	1 cut(s)	1359
BstV1I	GCAGC	9 cut(s)	163, 258, 279, 409, 581, 1281, 1345, 1351, 1373
BstV2I	GAAGAC	3 cut(s)	212, 1399, 1584
Bsu15I	ATCGAT	1 cut(s)	780
BsuRI	GGCC	3 cut(s)	164, 1222, 1465
BsuTUI	ATCGAT	1 cut(s)	780
BtrI	CACGTC	1 cut(s)	1156
BtsCI	GGATG	1 cut(s)	1353
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	3 cut(s)	166, 297, 1369
CaiI	CAGNNNCTG	1 cut(s)	375
CfoI	GCGC	1 cut(s)	1598
ClaI	ATCGAT	1 cut(s)	780
CviAII	CATG	3 cut(s)	400, 406, 848
DdeI	CTNAG	5 cut(s)	381, 702, 924, 1116, 1506
DpnI	GATC	6 cut(s)	339, 542, 668, 783, 1302, 1587
DpnII	GATC	6 cut(s)	337, 540, 666, 781, 1300, 1585
Eam1104I	CTCTTC	3 cut(s)	66, 744, 1454
EarI	CTCTTC	3 cut(s)	66, 744, 1454
EciI	GGCGGA	3 cut(s)	314, 335, 406
Ecl136II	GAGCTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	887
Eco147I	AGGCCT	1 cut(s)	1465
Eco24I	GRGCYC	2 cut(s)	413, 875
Eco32I	GATATC	1 cut(s)	979
Eco53kI	GAGCTC	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	13, 1019
EcoRV	GATATC	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	887
EcoT38I	GRGCYC	2 cut(s)	413, 875
ErhI	CCWWGG	1 cut(s)	887
FaeI	CATG	3 cut(s)	403, 409, 851
FalI	AAGNNNNNCTT	2 cut(s)	1247, 1279
FaqI	GGGAC	1 cut(s)	1052
FatI	CATG	3 cut(s)	399, 405, 847
FauI	CCCGC	2 cut(s)	302, 760
FbaI	TGATCA	2 cut(s)	540, 1585
FokI	GGATG	1 cut(s)	1360
FriOI	GRGCYC	2 cut(s)	413, 875
FspBI	CTAG	2 cut(s)	1467, 1544
GlaI	GCGC	1 cut(s)	1597
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	3 cut(s)	164, 1222, 1465
HapII	CCGG	4 cut(s)	187, 306, 822, 1345
HhaI	GCGC	1 cut(s)	1598
Hin1II	CATG	3 cut(s)	403, 409, 851
Hin6I	GCGC	1 cut(s)	1596
HinP1I	GCGC	1 cut(s)	1596
HindIII	AAGCTT	1 cut(s)	829
HinfI	GANTC	8 cut(s)	120, 302, 395, 464, 500, 695, 1385, 1537
HpaII	CCGG	4 cut(s)	187, 306, 822, 1345
HphI	GGTGA	8 cut(s)	16, 89, 451, 569, 734, 1442, 1532, 1580
Hpy166II	GTNNAC	3 cut(s)	352, 970, 1484
Hpy188I	TCNGA	4 cut(s)	463, 545, 1144, 1570
Hpy188III	TCNNGA	5 cut(s)	33, 785, 1115, 1323, 1389
Hpy8I	GTNNAC	3 cut(s)	352, 970, 1484
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	1071, 1212
HpyCH4III	ACNGT	3 cut(s)	430, 557, 1087
HpyCH4IV	ACGT	1 cut(s)	1155
HpyF10VI	GCNNNNNNNGC	5 cut(s)	234, 243, 246, 326, 1364
HpyF3I	CTNAG	5 cut(s)	381, 702, 924, 1116, 1506
HpySE526I	ACGT	1 cut(s)	1155
Hsp92II	CATG	3 cut(s)	403, 409, 851
HspAI	GCGC	1 cut(s)	1596
Ksp22I	TGATCA	2 cut(s)	540, 1585
Kzo9I	GATC	6 cut(s)	337, 540, 666, 781, 1300, 1585
LmnI	GCTCC	7 cut(s)	55, 416, 513, 611, 1117, 1280, 1291
Lsp1109I	GCAGC	9 cut(s)	163, 258, 279, 409, 581, 1281, 1345, 1351, 1373
LweI	GCATC	2 cut(s)	471, 786
MaeI	CTAG	2 cut(s)	1467, 1544
MaeII	ACGT	1 cut(s)	1155
MaeIII	GTNAC	4 cut(s)	5, 754, 1103, 1509
MalI	GATC	6 cut(s)	339, 542, 668, 783, 1302, 1587
MboI	GATC	6 cut(s)	337, 540, 666, 781, 1300, 1585
MfeI	CAATTG	1 cut(s)	930
MhlI	GDGCHC	3 cut(s)	279, 413, 875
MluCI	AATT	8 cut(s)	268, 442, 561, 580, 918, 930, 1184, 1327
MlyI	GAGTC	4 cut(s)	114, 311, 509, 704
MmeI	TCCRAC	1 cut(s)	486
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	867, 1425
MslI	CAYNNNNRTG	3 cut(s)	404, 750, 846
MspA1I	CMGCKG	2 cut(s)	422, 1364
MspI	CCGG	4 cut(s)	187, 306, 822, 1345
MspR9I	CCNGG	4 cut(s)	15, 823, 1021, 1345
MunI	CAATTG	1 cut(s)	930
MvaI	CCWGG	2 cut(s)	15, 1021
MwoI	GCNNNNNNNGC	5 cut(s)	234, 243, 246, 326, 1364
NciI	CCSGG	2 cut(s)	823, 1345
NdeII	GATC	6 cut(s)	337, 540, 666, 781, 1300, 1585
NlaIII	CATG	3 cut(s)	403, 409, 851
NlaIV	GGNNCC	1 cut(s)	1113
NspV	TTCGAA	1 cut(s)	587
PceI	AGGCCT	1 cut(s)	1465
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	4 cut(s)	395, 464, 1385, 1537
PleI	GAGTC	4 cut(s)	114, 310, 508, 703
PpsI	GAGTC	4 cut(s)	114, 310, 508, 703
PsiI	TTATAA	1 cut(s)	810
Psp124BI	GAGCTC	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	13, 1019
PspGI	CCWGG	2 cut(s)	13, 1019
PspN4I	GGNNCC	1 cut(s)	1113
PstI	CTGCAG	1 cut(s)	1363
PstNI	CAGNNNCTG	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	1364
RseI	CAYNNNNRTG	3 cut(s)	404, 750, 846
SacI	GAGCTC	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	867, 1425
Sau3AI	GATC	6 cut(s)	337, 540, 666, 781, 1300, 1585
SchI	GAGTC	4 cut(s)	114, 311, 509, 704
ScrFI	CCNGG	4 cut(s)	15, 823, 1021, 1345
SduI	GDGCHC	3 cut(s)	279, 413, 875
SfaNI	GCATC	2 cut(s)	471, 786
SfcI	CTRYAG	1 cut(s)	1359
SfuI	TTCGAA	1 cut(s)	587
SmiMI	CAYNNNNRTG	3 cut(s)	404, 750, 846
Sse9I	AATT	8 cut(s)	268, 442, 561, 580, 918, 930, 1184, 1327
SseBI	AGGCCT	1 cut(s)	1465
SsiI	CCGC	8 cut(s)	237, 299, 309, 320, 417, 420, 767, 1056
SspMI	CTAG	2 cut(s)	1467, 1544
SstI	GAGCTC	1 cut(s)	413
StuI	AGGCCT	1 cut(s)	1465
StyD4I	CCNGG	4 cut(s)	13, 821, 1019, 1343
StyI	CCWWGG	1 cut(s)	887
TaaI	ACNGT	3 cut(s)	430, 557, 1087
TaiI	ACGT	1 cut(s)	1158
TaqI	TCGA	5 cut(s)	387, 587, 780, 989, 1322
TaqII	GACCGA	1 cut(s)	1411
TasI	AATT	8 cut(s)	268, 442, 561, 580, 918, 930, 1184, 1327
TauI	GCSGC	2 cut(s)	240, 422
TfiI	GAWTC	4 cut(s)	395, 464, 1385, 1537
Tru1I	TTAA	2 cut(s)	867, 1425
Tru9I	TTAA	2 cut(s)	867, 1425
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	9 cut(s)	151, 246, 292, 422, 569, 1294, 1358, 1361, 1364
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	1054
TspRI	CASTG	1 cut(s)	531
XagI	CCTNNNNNAGG	1 cut(s)	361
XapI	RAATTY	4 cut(s)	268, 442, 561, 1327
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	2 cut(s)	1467, 1544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.