Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008391

Physical Location & Seq

Genomic Coordinates Forward (+)

18205714 .. 18206740

Gene Structure 1027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGTAACTCCCAAGGCAGCTTCACCAACTCCAGAGAGCCACCCAATGCCCTTCCTCATCCTCTTCCTCTCTACACTTCCTCCTCTTTAGCCACAGATCACCACTACTGTGACTACAATGACCACAGAATCAAAACCCTTTTGAAGAAAATGTTCAGGGAGTTTGGCTTGGCCTGTTTTCTCCCACCTCGCCAGAAAAAGAGCAACCAGAAGACCCCAGTTGATGACGACAGCAACAAGAAGAAGAAGATAAATTTAGAGCACAACAAAGCGTGGCTGCTGGCGGAGTCCGGCGGGTGTGGGGCGGAGTTGGAAAATGCCGATCCCCATTCGGTTAACTCCTCTTTCAGATTCACCTTCTGCTCTCAGGTGGAGCTGGATTCCATGAACATGAGCTCCTCCGCCGCTGCAACGGTTCTAATGGTGAATTTGGGAAATGGGATGTCTGAATCCAAAGCTAAAGAGGTCAAGTGGAGGCGATTTGAGTCGTTGGAGAGGAGCATTTCCCCAATGGCACACACTTTGATCAGATATAGCTACGGTGAAATTGTTGCTGCCACTCGCAATTTTTCGAAAGGTAGAGTTTTGGGGAGAGGAGCTTTGAGCTGTGTATTTAGGGGCAGAGTTGGGATTTTGAGAACTGTTGTGGCGATCAAGCGACTGGACAAGGAAGATAAAGAGTCTGCTAAGGCATTTTGTAGAGAGCTGATGATTTCTAGCTCTCTTCACAACCCAAATGTGACACCTCTTGTGGGGTTTTGCATTGATCCAGAGGAGGGCTTGTTTTTGGTTTATAAGTACGTCTCCGGGGGAAGCTTGGAGCGTCATTTGCACGAAAACGAGGGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

284

Amino Acids

31.63

Weight (kDa)

9.11

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	190 - 280	9.6e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	193 - 281	6.4e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66460 AT1G66460 AT1G66460 AT5G37790
fragaria_vesca	FvH4_1g28910 FvH4_1g28910
malus_domestica	MD09G1262600.v1.1 MD17G1257500.v1.1
prunus_persica	Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1
pyrus_communis	pycom09g17690 pycom17g25960
rosa_chinensis	RchiOBHm_Chr3g0493411
rosa_laevigata	RLG00000022715
rosa_multiflora	Rmu_sc0000828.1_g000022
rosa_roxburghii	Rroxscaffold_6G00391600
rosa_rugosa	Rorug03G0260900
rosa_samantha	Rh3AG310000 Rh3BG346100 Rh3CG343500 Rh3DG345100
rosa_wichuraiana	Rw3G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AciI	CCGC	5 cut(s)	284, 294, 305, 402, 405
AclWI	GGATC	2 cut(s)	317, 761
AcsI	RAATTY	2 cut(s)	253, 427
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	2 cut(s)	752, 776
AgsI	TTSAA	1 cut(s)	145
AleI	CACNNNNGTG	1 cut(s)	108
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
Alw21I	GWGCWC	2 cut(s)	264, 398
Alw26I	GTCTC	1 cut(s)	808
AlwI	GGATC	2 cut(s)	317, 761
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	4 cut(s)	18, 277, 407, 554
ApoI	RAATTY	2 cut(s)	253, 427
Asp700I	GAANNNNTTC	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	808
AsuHPI	GGTGA	5 cut(s)	16, 92, 346, 436, 554
AsuII	TTCGAA	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	264, 398
BbvI	GCAGC	4 cut(s)	30, 264, 394, 541
BclI	TGATCA	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	808
BcoDI	GTCTC	1 cut(s)	808
BfaI	CTAG	1 cut(s)	717
BisI	GCNGC	5 cut(s)	19, 278, 405, 408, 555
BlsI	GCNGC	5 cut(s)	20, 279, 406, 409, 556
Bme1390I	CCNGG	1 cut(s)	808
BmrFI	CCNGG	1 cut(s)	808
BmrI	ACTGGG	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu14I	TTCGAA	1 cut(s)	572
BpuMI	CCSGG	1 cut(s)	808
BsaJI	CCNNGG	2 cut(s)	13, 807
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 95, 380, 410, 767, 797
Bsc4I	CCNNNNNNNGG	2 cut(s)	752, 776
Bse1I	ACTGG	2 cut(s)	218, 666
BseDI	CCNNGG	2 cut(s)	13, 807
BseGI	GGATG	2 cut(s)	58, 447
BseLI	CCNNNNNNNGG	2 cut(s)	752, 776
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	218, 666
BseRI	GAGGAG	6 cut(s)	73, 331, 388, 511, 609, 788
BseXI	GCAGC	4 cut(s)	30, 264, 394, 541
BshFI	GGCC	1 cut(s)	173
BsiHKAI	GWGCWC	2 cut(s)	264, 398
BsiSI	CCGG	2 cut(s)	291, 807
BslI	CCNNNNNNNGG	2 cut(s)	752, 776
BsmAI	GTCTC	1 cut(s)	808
BsmBI	CGTCTC	1 cut(s)	808
BsnI	GGCC	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	264, 398
Bsp143I	GATC	5 cut(s)	97, 322, 525, 651, 766
BspACI	CCGC	5 cut(s)	284, 294, 305, 402, 405
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	379
BspPI	GGATC	2 cut(s)	317, 761
BspT104I	TTCGAA	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	218, 666
BssECI	CCNNGG	2 cut(s)	13, 807
BssMI	GATC	5 cut(s)	97, 322, 525, 651, 766
BssT1I	CCWWGG	1 cut(s)	13
Bst4CI	ACNGT	4 cut(s)	110, 415, 542, 643
Bst6I	CTCTTC	2 cut(s)	69, 729
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	366, 687
BstF5I	GGATG	2 cut(s)	58, 447
BstKTI	GATC	5 cut(s)	100, 325, 528, 654, 769
BstMAI	GTCTC	1 cut(s)	808
BstMBI	GATC	5 cut(s)	97, 322, 525, 651, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	829
BstSCI	CCNGG	1 cut(s)	806
BstV1I	GCAGC	4 cut(s)	30, 264, 394, 541
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	58, 447
Cac8I	GCNNGC	1 cut(s)	282
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	2 cut(s)	385, 391
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	2 cut(s)	366, 687
DpnI	GATC	5 cut(s)	99, 324, 527, 653, 768
DpnII	GATC	5 cut(s)	97, 322, 525, 651, 766
Eam1104I	CTCTTC	2 cut(s)	69, 729
EarI	CTCTTC	2 cut(s)	69, 729
EciI	GGCGGA	3 cut(s)	299, 320, 391
Ecl136II	GAGCTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	808
FaeI	CATG	2 cut(s)	388, 394
FaiI	YATR	4 cut(s)	386, 392, 534, 795
FatI	CATG	2 cut(s)	384, 390
FauI	CCCGC	1 cut(s)	287
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	5 cut(s)	19, 278, 405, 408, 555
FokI	GGATG	2 cut(s)	45, 454
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	5 cut(s)	19, 278, 405, 408, 555
FspBI	CTAG	1 cut(s)	717
GluI	GCNGC	5 cut(s)	19, 278, 405, 408, 555
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	291, 807
HgaI	GACGC	1 cut(s)	812
Hin1II	CATG	2 cut(s)	388, 394
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	814
HinfI	GANTC	7 cut(s)	129, 287, 351, 380, 449, 485, 680
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	2 cut(s)	291, 807
HphI	GGTGA	5 cut(s)	16, 92, 346, 436, 554
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	3 cut(s)	350, 448, 530
Hpy188III	TCNNGA	2 cut(s)	33, 770
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	62, 367
HpyCH4III	ACNGT	4 cut(s)	110, 415, 542, 643
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	3 cut(s)	410, 762, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	829
HpyF3I	CTNAG	2 cut(s)	366, 687
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	2 cut(s)	388, 394
Ksp22I	TGATCA	1 cut(s)	525
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	97, 322, 525, 651, 766
LmnI	GCTCC	5 cut(s)	373, 401, 498, 596, 820
Lsp1109I	GCAGC	4 cut(s)	30, 264, 394, 541
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	3 cut(s)	5, 110, 739
MalI	GATC	5 cut(s)	99, 324, 527, 653, 768
MboI	GATC	5 cut(s)	97, 322, 525, 651, 766
MboII	GAAGA	8 cut(s)	56, 157, 223, 253, 256, 259, 683, 716
MhlI	GDGCHC	2 cut(s)	264, 398
MluCI	AATT	4 cut(s)	253, 427, 546, 565
MlyI	GAGTC	3 cut(s)	296, 494, 689
MmeI	TCCRAC	2 cut(s)	291, 471
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	108, 389
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	2 cut(s)	291, 807
MspR9I	CCNGG	1 cut(s)	808
MwoI	GCNNNNNNNGC	1 cut(s)	829
NciI	CCSGG	1 cut(s)	808
NdeII	GATC	5 cut(s)	97, 322, 525, 651, 766
NlaIII	CATG	2 cut(s)	388, 394
NmuCI	GTSAC	2 cut(s)	110, 739
NspV	TTCGAA	1 cut(s)	572
OliI	CACNNNNGTG	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	4 cut(s)	129, 351, 380, 449
PkrI	GCNGC	5 cut(s)	20, 279, 406, 409, 556
PleI	GAGTC	3 cut(s)	295, 493, 688
PpsI	GAGTC	3 cut(s)	295, 493, 688
PsiI	TTATAA	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	398
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	2 cut(s)	108, 389
SacI	GAGCTC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	5 cut(s)	19, 278, 405, 408, 555
Sau3AI	GATC	5 cut(s)	97, 322, 525, 651, 766
SchI	GAGTC	3 cut(s)	296, 494, 689
ScrFI	CCNGG	1 cut(s)	808
SduI	GDGCHC	2 cut(s)	264, 398
SfuI	TTCGAA	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	108, 389
Sse9I	AATT	4 cut(s)	253, 427, 546, 565
SsiI	CCGC	5 cut(s)	284, 294, 305, 402, 405
SspMI	CTAG	1 cut(s)	717
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	806
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	4 cut(s)	110, 415, 542, 643
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	1 cut(s)	572
TasI	AATT	4 cut(s)	253, 427, 546, 565
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	4 cut(s)	129, 351, 380, 449
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	110, 739
TseI	GCWGC	4 cut(s)	18, 277, 407, 554
Tsp45I	GTSAC	2 cut(s)	110, 739
TspDTI	ATGAA	1 cut(s)	401
XapI	RAATTY	2 cut(s)	253, 427
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.