Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008391

Physical Location & Seq

Genomic Coordinates Reverse (-)

38802602 .. 38807319

Gene Structure 4718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG343500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGCTTTTCCCTAGACACTTTGAGAAGCTCTAGAGAGCCACCCAATGTTAATGCACCATACACTTGCTCCTCTCTAGTCTCAGATCACTACTGTCACCACAATGAGCTCACAGTCAAAGCCATTTTGAAGAAGATGCTTAGGGAGCTTGGCCTGTCCTGTTTTCTTCCTCCACCCCCACAAACAAGAGCCCAAAATGAAGGTGATGACGACAGCAATGGCAGCAAGAAGATGAGTTTGGAGCACAACAAGGCATGGCTGCTAGCAGAGTCAGGTGGGTGTGGAGCAGACTTGACCAGTGCTGATCCACAATCAGTTCACTCCTCTTTCAGGTTCAGCTTCTGCTCTCAAGTTGAGCTCGAGTCCTTGAACATGACCTCTTCTTCTGCTGCCACTGTTCTGATGGTCAACTTGGGGAATGGCTTGTGCGAGTCCAAAGCTAAAGAATTGAAATGGAGGAGATTCGAGTCGTTAGAGAGAAGCATATCCCCAATGGCCAACACTTTGGTTCGATTCAGCTACGCCCAAATTCATGCCGCCACTCGCAATTTCTCACAAGGCAGAGTTTTGGGGAGAGGAGCTTTGAGCTGTGTGTTTAGGGGTAGGGTTGGGATTTTGAGGACAGTTGTGGCAATCAAGCGATTGGACAAGGAAGATAAGGAGTCTTCTAAGGCGTTTTGTAGAGAGTTGATGATTTCTAGCTCTCTTCACAACCCAAATGTAACTCCCCTTTTGGGGTTTTGCATAGATCCAGAGGAGGGCTTGTTTTTGGTTTACAAGTATGTCTCTGGGGGAAGCCTAGAGCGTCACTTGCATGAGAAAAAGAGGGGAGTGCAGGGCTCTTCAGCACTTTCTTGGTCTGTAAGGCATAAGGTTGCAATAGGAATAGCAGAGGCAATTGCATATCTACATAATGGAACCGAAAGGTGCATTGTTCACAGAGACATCAAACCCTCAAACATTCTCCTTTCTTCGAAGAAAACACCCAAGTTATGTGATTTTGGATTAGCCACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACAGTCAAGGGAACATTTGGTTACTTAGCTCCTGAGTATTTCCAACATGGAAAGATATCAGATAAAACTGATGTTTATGCTTTTGGTGTCGTCTTGCTGGAGTTGATAACGGGAAGGAAGCCAATTGAAGCAAGAAGGCCACAAGGAGAAGAAAACTTGGTTCTGTGGGTAGGTGTATCTTGCTACCTTCTTTTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

416

Amino Acids

45.99

Weight (kDa)

9.02

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	185 - 398	4.4e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	186 - 395	1.1e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66460 AT1G66460 AT1G66460 AT5G37790
fragaria_vesca	FvH4_1g28910 FvH4_1g28910
malus_domestica	MD09G1262600.v1.1 MD17G1257500.v1.1
prunus_persica	Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1
pyrus_communis	pycom09g17690 pycom17g25960
rosa_chinensis	RchiOBHm_Chr3g0493411
rosa_laevigata	RLG00000022715
rosa_multiflora	Rmu_sc0000828.1_g000022
rosa_roxburghii	Rroxscaffold_6G00391600
rosa_rugosa	Rorug03G0260900
rosa_samantha	Rh3AG310000 Rh3BG346100 Rh3CG343500 Rh3DG345100
rosa_wichuraiana	Rw3G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	2 cut(s)	299, 743
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	2 cut(s)	828, 1014
AfiI	CCNNNNNNNGG	4 cut(s)	330, 734, 735, 758
AgsI	TTSAA	4 cut(s)	130, 370, 451, 1178
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
Alw21I	GWGCWC	3 cut(s)	111, 246, 360
Alw26I	GTCTC	3 cut(s)	85, 790, 936
AlwI	GGATC	2 cut(s)	299, 743
AlwNI	CAGNNNCTG	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	151, 495, 1187
ApeKI	GCWGC	3 cut(s)	222, 259, 389
ApoI	RAATTY	1 cut(s)	528
AsuHPI	GGTGA	2 cut(s)	89, 215
AsuII	TTCGAA	1 cut(s)	974
AsuNHI	GCTAGC	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	497
BanII	GRGCYC	4 cut(s)	111, 193, 360, 842
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	3 cut(s)	111, 246, 360
BbvI	GCAGC	3 cut(s)	234, 246, 376
BccI	CCATC	1 cut(s)	397
BcoDI	GTCTC	3 cut(s)	85, 790, 936
BfaI	CTAG	6 cut(s)	14, 33, 77, 263, 699, 800
BisI	GCNGC	4 cut(s)	223, 260, 390, 537
BlsI	GCNGC	4 cut(s)	224, 261, 391, 538
BmeT110I	CYCGRG	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	919
BmsI	GCATC	1 cut(s)	126
BmtI	GCTAGC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	1169
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	974
BpuEI	CTTGAG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 749, 779
Bsc4I	CCNNNNNNNGG	4 cut(s)	330, 734, 735, 758
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	4 cut(s)	330, 734, 735, 758
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	96, 1074
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	5 cut(s)	61, 313, 472, 591, 770
BseXI	GCAGC	3 cut(s)	234, 246, 376
BsgI	GTGCAG	2 cut(s)	854, 1008
BshFI	GGCC	3 cut(s)	153, 497, 1189
BsiHKAI	GWGCWC	3 cut(s)	111, 246, 360
BsiHKCI	CYCGRG	1 cut(s)	359
BslI	CCNNNNNNNGG	4 cut(s)	330, 734, 735, 758
BsmAI	GTCTC	3 cut(s)	85, 790, 936
BsnI	GGCC	3 cut(s)	153, 497, 1189
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	974
Bsp1286I	GDGCHC	5 cut(s)	111, 193, 246, 360, 842
Bsp143I	GATC	3 cut(s)	85, 304, 748
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	3 cut(s)	153, 497, 1189
BspCNI	CTCAG	2 cut(s)	95, 1075
BspLI	GGNNCC	1 cut(s)	919
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	299, 743
BspQI	GCTCTTC	1 cut(s)	847
BspT104I	TTCGAA	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	85, 304, 748
Bst4CI	ACNGT	5 cut(s)	95, 115, 397, 625, 1054
Bst6I	CTCTTC	3 cut(s)	385, 711, 847
BstBI	TTCGAA	1 cut(s)	974
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	5 cut(s)	82, 140, 669, 1075, 1083
BstENI	CCTNNNNNAGG	1 cut(s)	328
BstKTI	GATC	3 cut(s)	88, 307, 751
BstMAI	GTCTC	3 cut(s)	85, 790, 936
BstMBI	GATC	3 cut(s)	85, 304, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 222, 811
BstV1I	GCAGC	3 cut(s)	234, 246, 376
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	748
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	3 cut(s)	153, 497, 1189
BtsIMutI	CAGTG	2 cut(s)	304, 393
Cac8I	GCNNGC	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	342
CseI	GACGC	1 cut(s)	794
CviAII	CATG	6 cut(s)	255, 373, 533, 815, 1014, 1097
DdeI	CTNAG	5 cut(s)	82, 140, 669, 1075, 1083
DpnI	GATC	3 cut(s)	87, 306, 750
DpnII	GATC	3 cut(s)	85, 304, 748
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	3 cut(s)	385, 711, 847
EarI	CTCTTC	3 cut(s)	385, 711, 847
Ecl136II	GAGCTC	2 cut(s)	109, 358
Eco24I	GRGCYC	4 cut(s)	111, 193, 360, 842
Eco32I	GATATC	1 cut(s)	1107
Eco53kI	GAGCTC	2 cut(s)	109, 358
Eco57I	CTGAAG	2 cut(s)	828, 1014
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	2 cut(s)	109, 358
EcoNI	CCTNNNNNAGG	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	1107
EcoT38I	GRGCYC	4 cut(s)	111, 193, 360, 842
FaeI	CATG	6 cut(s)	258, 376, 536, 818, 1017, 1100
FatI	CATG	6 cut(s)	254, 372, 532, 814, 1013, 1096
Fnu4HI	GCNGC	4 cut(s)	223, 260, 390, 537
FriOI	GRGCYC	4 cut(s)	111, 193, 360, 842
Fsp4HI	GCNGC	4 cut(s)	223, 260, 390, 537
FspBI	CTAG	6 cut(s)	14, 33, 77, 263, 699, 800
GluI	GCNGC	4 cut(s)	223, 260, 390, 537
GsuI	CTGGAG	1 cut(s)	1169
HaeIII	GGCC	3 cut(s)	153, 497, 1189
HgaI	GACGC	1 cut(s)	794
Hin1II	CATG	6 cut(s)	258, 376, 536, 818, 1017, 1100
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	7 cut(s)	269, 362, 431, 462, 467, 513, 662
HphI	GGTGA	2 cut(s)	89, 215
Hpy166II	GTNNAC	4 cut(s)	319, 409, 775, 937
Hpy188I	TCNGA	3 cut(s)	85, 402, 1111
Hpy188III	TCNNGA	3 cut(s)	33, 752, 1082
Hpy8I	GTNNAC	4 cut(s)	319, 409, 775, 937
HpyAV	CCTTC	5 cut(s)	194, 1038, 1158, 1179, 1247
HpyCH4III	ACNGT	5 cut(s)	95, 115, 397, 625, 1054
HpyCH4V	TGCA	9 cut(s)	56, 744, 814, 835, 878, 902, 930, 1025, 1047
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 222, 811
HpyF3I	CTNAG	5 cut(s)	82, 140, 669, 1075, 1083
Hsp92II	CATG	6 cut(s)	258, 376, 536, 818, 1017, 1100
Kzo9I	GATC	3 cut(s)	85, 304, 748
LguI	GCTCTTC	1 cut(s)	847
LmnI	GCTCC	6 cut(s)	74, 145, 241, 284, 578, 1084
Lsp1109I	GCAGC	3 cut(s)	234, 246, 376
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	6 cut(s)	14, 33, 77, 263, 699, 800
MaeIII	GTNAC	4 cut(s)	95, 721, 806, 1070
MalI	GATC	3 cut(s)	87, 306, 750
MboI	GATC	3 cut(s)	85, 304, 748
MfeI	CAATTG	2 cut(s)	897, 1173
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	5 cut(s)	111, 193, 246, 360, 842
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	5 cut(s)	446, 528, 547, 897, 1173
MluNI	TGGCCA	1 cut(s)	497
MlyI	GAGTC	5 cut(s)	278, 371, 440, 476, 671
MmeI	TCCRAC	1 cut(s)	1117
Mox20I	TGGCCA	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	2 cut(s)	51, 1249
MslI	CAYNNNNRTG	2 cut(s)	102, 813
Msp20I	TGGCCA	1 cut(s)	497
MunI	CAATTG	2 cut(s)	897, 1173
MwoI	GCNNNNNNNGC	3 cut(s)	145, 222, 811
NdeII	GATC	3 cut(s)	85, 304, 748
NheI	GCTAGC	1 cut(s)	262
NlaIII	CATG	6 cut(s)	258, 376, 536, 818, 1017, 1100
NlaIV	GGNNCC	1 cut(s)	919
NmuCI	GTSAC	2 cut(s)	95, 806
NspV	TTCGAA	1 cut(s)	974
PaeR7I	CTCGAG	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	847
PfeI	GAWTC	2 cut(s)	462, 513
PkrI	GCNGC	4 cut(s)	224, 261, 391, 538
PleI	GAGTC	5 cut(s)	277, 370, 439, 475, 670
PpsI	GAGTC	5 cut(s)	277, 370, 439, 475, 670
Psp124BI	GAGCTC	2 cut(s)	111, 360
PspN4I	GGNNCC	1 cut(s)	919
PspXI	VCTCGAGB	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	748
RseI	CAYNNNNRTG	2 cut(s)	102, 813
SacI	GAGCTC	2 cut(s)	111, 360
SapI	GCTCTTC	1 cut(s)	847
SaqAI	TTAA	2 cut(s)	51, 1249
SatI	GCNGC	4 cut(s)	223, 260, 390, 537
Sau3AI	GATC	3 cut(s)	85, 304, 748
SchI	GAGTC	5 cut(s)	278, 371, 440, 476, 671
SduI	GDGCHC	5 cut(s)	111, 193, 246, 360, 842
SfaNI	GCATC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	359
SfuI	TTCGAA	1 cut(s)	974
SlaI	CTCGAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	102, 813
SmlI	CTYRAG	2 cut(s)	348, 359
SmoI	CTYRAG	2 cut(s)	348, 359
Sse9I	AATT	5 cut(s)	446, 528, 547, 897, 1173
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	6 cut(s)	14, 33, 77, 263, 699, 800
SstI	GAGCTC	2 cut(s)	111, 360
TaaI	ACNGT	5 cut(s)	95, 115, 397, 625, 1054
TaqI	TCGA	4 cut(s)	360, 465, 511, 974
TasI	AATT	5 cut(s)	446, 528, 547, 897, 1173
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	462, 513
Tru1I	TTAA	2 cut(s)	51, 1249
Tru9I	TTAA	2 cut(s)	51, 1249
TscAI	CASTG	2 cut(s)	304, 400
TseFI	GTSAC	2 cut(s)	95, 806
TseI	GCWGC	3 cut(s)	222, 259, 389
Tsp45I	GTSAC	2 cut(s)	95, 806
TspDTI	ATGAA	2 cut(s)	213, 521
TspRI	CASTG	2 cut(s)	304, 400
XagI	CCTNNNNNAGG	1 cut(s)	328
XapI	RAATTY	1 cut(s)	528
XbaI	TCTAGA	1 cut(s)	32
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	359
XspI	CTAG	6 cut(s)	14, 33, 77, 263, 699, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.