Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008391

Physical Location & Seq

Genomic Coordinates Reverse (-)

38944110 .. 38948812

Gene Structure 4703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG345100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGCTTTTCCCAAGACACTTTGAGAAGCGCTAGAGAGCCTCCCAATGTTAATGCACCATACACTTGCTCCTCTCTAGTCTCAGATCACTACTGTCACCACAATGAGCTCACAGTCAAAGCCATTTTGAAGAAGATGCTTAGGGAGCTTGGCCTGTCCTGTTTTCTTCCTCCACCCCCACAAACAAGAGCCCAAAATGAAGGTGATGACGACAGCAATGGCAGCAAGAAGATGAGTTTGGAGCACAACAAGGCATGGCTGCTAGCAGAGTCAGGTGGGTGTGGAGCAGACTTGACTAGTGCTGATCCACAATCAGTTCACTCCTCTTTCAGGTTCAGCTTCTGCTCTCAAGTTGAGCTCGAGTCCTTGAACATGACCTCTTCTTCTGCTGCCACTGTTCTGATGGTCAACTTGGGGAATGGCTTGTGCGAGTCCAAAGCTAAAGAATTGAAATGGAGGAGATTCGAGTCGTTAGAGAGAAGCATATCCCCAATGGCCAACACTTTGGTTCGATTCAGCTACGCCCAAATTCATGCCGCCACTCGCAATTTCTCACAAGGCAGAGTTTTGGGGAGAGGAGCTTTGAGCTGTGTGTTTAGGGGTAGAGTTGGGATTTTGAGGACAGTTGTGGCAATCAAGCGATTGGACAAGGAAGATAAGGAGTCTTCTAAGGCGTTTTGTAGAGAGTTGATGATTTCTAGCTCTCTTCACAACCCAAATGTAACTCCCCTTTTGGGGTTTTGCATAGATCCAGAGGAGGGCTTGTTTTTGGTTTACAAGTATGTCTCTGGGGGAAGCCTAGAGCGTCACTTGCATGAGAAAAAGAGGGGAGTGCAGGGCTCTTCAGCACTTTCTTGGTCTGTAAGGCATAAGGTTGCAATAGGAATAGCGGAGGCAATTGCATATCTACATAATGGAACCGAAAGGTGCATTGTTCACAGAGACATCAAACCCTCAAACATTCTCCTTTCTTCGAAGAAAACACCCAAGGTAGATGGAGAATTCTCTTATCAATTTCATTCTGGTTTCGACTCAAATGTGGTTATGTCGGAAATTGGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

354

Amino Acids

39.12

Weight (kDa)

8.85

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	185 - 331	6.6e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	186 - 331	1.6e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66460 AT1G66460 AT1G66460 AT5G37790
fragaria_vesca	FvH4_1g28910 FvH4_1g28910
malus_domestica	MD09G1262600.v1.1 MD17G1257500.v1.1
prunus_persica	Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1
pyrus_communis	pycom09g17690 pycom17g25960
rosa_chinensis	RchiOBHm_Chr3g0493411
rosa_laevigata	RLG00000022715
rosa_multiflora	Rmu_sc0000828.1_g000022
rosa_roxburghii	Rroxscaffold_6G00391600
rosa_rugosa	Rorug03G0260900
rosa_samantha	Rh3AG310000 Rh3BG346100 Rh3CG343500 Rh3DG345100
rosa_wichuraiana	Rw3G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	537, 890
AclWI	GGATC	2 cut(s)	299, 743
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	2 cut(s)	528, 1001
AcuI	CTGAAG	1 cut(s)	828
AfeI	AGCGCT	1 cut(s)	31
AfiI	CCNNNNNNNGG	4 cut(s)	330, 734, 735, 758
AgsI	TTSAA	3 cut(s)	130, 370, 451
AhlI	ACTAGT	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	9 cut(s)	109, 148, 339, 358, 440, 519, 581, 588, 702
AluI	AGCT	9 cut(s)	109, 148, 339, 358, 440, 519, 581, 588, 702
Alw21I	GWGCWC	3 cut(s)	111, 246, 360
Alw26I	GTCTC	3 cut(s)	85, 790, 936
AlwI	GGATC	2 cut(s)	299, 743
AlwNI	CAGNNNCTG	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	359
Aor51HI	AGCGCT	1 cut(s)	31
AoxI	GGCC	2 cut(s)	151, 495
ApeKI	GCWGC	3 cut(s)	222, 259, 389
ApoI	RAATTY	2 cut(s)	528, 1001
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	89, 215
AsuII	TTCGAA	1 cut(s)	974
AsuNHI	GCTAGC	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	497
BanII	GRGCYC	4 cut(s)	111, 193, 360, 842
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	3 cut(s)	111, 246, 360
BbvI	GCAGC	3 cut(s)	234, 246, 376
BccI	CCATC	2 cut(s)	397, 989
BcoDI	GTCTC	3 cut(s)	85, 790, 936
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	6 cut(s)	33, 77, 263, 297, 699, 800
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	4 cut(s)	223, 260, 390, 537
BlsI	GCNGC	4 cut(s)	224, 261, 391, 538
BmeT110I	CYCGRG	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	919
BmsI	GCATC	1 cut(s)	126
BmtI	GCTAGC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	974
BpuEI	CTTGAG	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	987
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 749, 779
Bsc4I	CCNNNNNNNGG	4 cut(s)	330, 734, 735, 758
Bse3DI	GCAATG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	987
BseLI	CCNNNNNNNGG	4 cut(s)	330, 734, 735, 758
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	5 cut(s)	61, 313, 472, 591, 770
BseXI	GCAGC	3 cut(s)	234, 246, 376
BsgI	GTGCAG	1 cut(s)	854
BshFI	GGCC	2 cut(s)	153, 497
BsiHKAI	GWGCWC	3 cut(s)	111, 246, 360
BsiHKCI	CYCGRG	1 cut(s)	359
BslI	CCNNNNNNNGG	4 cut(s)	330, 734, 735, 758
BsmAI	GTCTC	3 cut(s)	85, 790, 936
BsnI	GGCC	2 cut(s)	153, 497
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	974
Bsp1286I	GDGCHC	5 cut(s)	111, 193, 246, 360, 842
Bsp143I	GATC	3 cut(s)	85, 304, 748
BspACI	CCGC	2 cut(s)	537, 890
BspANI	GGCC	2 cut(s)	153, 497
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	919
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	299, 743
BspQI	GCTCTTC	1 cut(s)	847
BspT104I	TTCGAA	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	987
BssMI	GATC	3 cut(s)	85, 304, 748
BssT1I	CCWWGG	1 cut(s)	987
Bst4CI	ACNGT	4 cut(s)	95, 115, 397, 625
Bst6I	CTCTTC	3 cut(s)	385, 711, 847
BstBI	TTCGAA	1 cut(s)	974
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	82, 140, 669
BstENI	CCTNNNNNAGG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	3 cut(s)	88, 307, 751
BstMAI	GTCTC	3 cut(s)	85, 790, 936
BstMBI	GATC	3 cut(s)	85, 304, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 222, 811
BstV1I	GCAGC	3 cut(s)	234, 246, 376
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	748
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	2 cut(s)	153, 497
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	342
CfoI	GCGC	1 cut(s)	32
CseI	GACGC	1 cut(s)	794
CviAII	CATG	4 cut(s)	255, 373, 533, 815
DdeI	CTNAG	3 cut(s)	82, 140, 669
DpnI	GATC	3 cut(s)	87, 306, 750
DpnII	GATC	3 cut(s)	85, 304, 748
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	3 cut(s)	385, 711, 847
EarI	CTCTTC	3 cut(s)	385, 711, 847
Ecl136II	GAGCTC	2 cut(s)	109, 358
Eco130I	CCWWGG	1 cut(s)	987
Eco24I	GRGCYC	4 cut(s)	111, 193, 360, 842
Eco47III	AGCGCT	1 cut(s)	31
Eco53kI	GAGCTC	2 cut(s)	109, 358
Eco57I	CTGAAG	1 cut(s)	828
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	2 cut(s)	109, 358
EcoNI	CCTNNNNNAGG	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	1001
EcoT14I	CCWWGG	1 cut(s)	987
EcoT38I	GRGCYC	4 cut(s)	111, 193, 360, 842
ErhI	CCWWGG	1 cut(s)	987
FaeI	CATG	4 cut(s)	258, 376, 536, 818
FatI	CATG	4 cut(s)	254, 372, 532, 814
Fnu4HI	GCNGC	4 cut(s)	223, 260, 390, 537
FriOI	GRGCYC	4 cut(s)	111, 193, 360, 842
Fsp4HI	GCNGC	4 cut(s)	223, 260, 390, 537
FspBI	CTAG	6 cut(s)	33, 77, 263, 297, 699, 800
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	223, 260, 390, 537
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	153, 497
HgaI	GACGC	1 cut(s)	794
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	258, 376, 536, 818
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	8 cut(s)	269, 362, 431, 462, 467, 513, 662, 1031
HphI	GGTGA	2 cut(s)	89, 215
Hpy166II	GTNNAC	4 cut(s)	319, 409, 775, 937
Hpy188I	TCNGA	3 cut(s)	85, 402, 1051
Hpy188III	TCNNGA	1 cut(s)	752
Hpy8I	GTNNAC	4 cut(s)	319, 409, 775, 937
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	4 cut(s)	95, 115, 397, 625
HpyCH4V	TGCA	7 cut(s)	56, 744, 814, 835, 878, 902, 930
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 222, 811
HpyF3I	CTNAG	3 cut(s)	82, 140, 669
Hsp92II	CATG	4 cut(s)	258, 376, 536, 818
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	85, 304, 748
LguI	GCTCTTC	1 cut(s)	847
LmnI	GCTCC	5 cut(s)	74, 145, 241, 284, 578
LpnPI	CCDG	8 cut(s)	167, 172, 258, 316, 765, 774, 821, 1008
Lsp1109I	GCAGC	3 cut(s)	234, 246, 376
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	6 cut(s)	33, 77, 263, 297, 699, 800
MaeIII	GTNAC	3 cut(s)	95, 721, 806
MalI	GATC	3 cut(s)	87, 306, 750
MboI	GATC	3 cut(s)	85, 304, 748
MfeI	CAATTG	1 cut(s)	897
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	5 cut(s)	111, 193, 246, 360, 842
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	7 cut(s)	446, 528, 547, 897, 1001, 1013, 1053
MluNI	TGGCCA	1 cut(s)	497
MlyI	GAGTC	6 cut(s)	278, 371, 440, 476, 671, 1025
MmeI	TCCRAC	1 cut(s)	1029
Mox20I	TGGCCA	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	2 cut(s)	51, 1063
MslI	CAYNNNNRTG	2 cut(s)	102, 813
Msp20I	TGGCCA	1 cut(s)	497
MunI	CAATTG	1 cut(s)	897
MwoI	GCNNNNNNNGC	3 cut(s)	145, 222, 811
NdeII	GATC	3 cut(s)	85, 304, 748
NheI	GCTAGC	1 cut(s)	262
NlaIII	CATG	4 cut(s)	258, 376, 536, 818
NlaIV	GGNNCC	1 cut(s)	919
NmuCI	GTSAC	2 cut(s)	95, 806
NspV	TTCGAA	1 cut(s)	974
PaeR7I	CTCGAG	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	847
PfeI	GAWTC	2 cut(s)	462, 513
PkrI	GCNGC	4 cut(s)	224, 261, 391, 538
PleI	GAGTC	6 cut(s)	277, 370, 439, 475, 670, 1025
PpsI	GAGTC	6 cut(s)	277, 370, 439, 475, 670, 1025
Psp124BI	GAGCTC	2 cut(s)	111, 360
PspN4I	GGNNCC	1 cut(s)	919
PspXI	VCTCGAGB	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	748
RseI	CAYNNNNRTG	2 cut(s)	102, 813
SacI	GAGCTC	2 cut(s)	111, 360
SapI	GCTCTTC	1 cut(s)	847
SaqAI	TTAA	2 cut(s)	51, 1063
SatI	GCNGC	4 cut(s)	223, 260, 390, 537
Sau3AI	GATC	3 cut(s)	85, 304, 748
SchI	GAGTC	6 cut(s)	278, 371, 440, 476, 671, 1025
SduI	GDGCHC	5 cut(s)	111, 193, 246, 360, 842
SfaNI	GCATC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	359
SfuI	TTCGAA	1 cut(s)	974
SlaI	CTCGAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	102, 813
SmlI	CTYRAG	2 cut(s)	348, 359
SmoI	CTYRAG	2 cut(s)	348, 359
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	7 cut(s)	446, 528, 547, 897, 1001, 1013, 1053
SsiI	CCGC	2 cut(s)	537, 890
SspMI	CTAG	6 cut(s)	33, 77, 263, 297, 699, 800
SstI	GAGCTC	2 cut(s)	111, 360
StyI	CCWWGG	1 cut(s)	987
TaaI	ACNGT	4 cut(s)	95, 115, 397, 625
TaqI	TCGA	5 cut(s)	360, 465, 511, 974, 1029
TasI	AATT	7 cut(s)	446, 528, 547, 897, 1001, 1013, 1053
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	462, 513
Tru1I	TTAA	2 cut(s)	51, 1063
Tru9I	TTAA	2 cut(s)	51, 1063
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	2 cut(s)	95, 806
TseI	GCWGC	3 cut(s)	222, 259, 389
Tsp45I	GTSAC	2 cut(s)	95, 806
TspDTI	ATGAA	3 cut(s)	213, 521, 1007
TspRI	CASTG	1 cut(s)	400
XagI	CCTNNNNNAGG	1 cut(s)	328
XapI	RAATTY	2 cut(s)	528, 1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	359
XspI	CTAG	6 cut(s)	33, 77, 263, 297, 699, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.