Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008391

Physical Location & Seq

Genomic Coordinates Forward (+)

24287534 .. 24290003

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGGGCTACTCCCAAGGCACTTTCACCTACTCCAGAGAGCCACCCAATGCTCCTCCTCCTCTTCCTCTATACGCTTCCTCCTCTTTAGCCATACATCACCATTACTACAATGACCACAGAATCAAAACCCTTGTAAAGAAAATGTTCAGGGAGCTTGGTCTGGCCTGCTTTCTCCCACCTCCTCGCCGGAGGACGACCAACCAGAAGACCCCATTTGATGACGACGGCAACAATGGCGGCAACAACAACAACAACAAGATAAATTTAGAGCACAACAAAGCGTGGCTGCTGGCGGAGTCCGGCGGGTGTGGGCCGGAGTTGGCAAATGCCGATCCCCAATCGGTTCACTCCTCTTTCAGGTTCAGCTTCTGCTCTCAGGTCGAGCTGGAATCCATGAACTTGAGCTCCTCCGCCGCTGCAACGGTTCTAATGGTGAATTTGGGAAATGGGTTCTCTGAATCGAAAGCTAAAGAGATGAAATGGAGGAGATTTGAGTGGTTGGAGAGGAGCATATCCCCAATGGCTCACACACTGATCAGATTTAGCTACGGTGAAATTCTCGCAGCTACTCGTAATTTTTCGAAAGGTAGAGTTTTGGGGAGAGGAGCTTTGAGCTGTGTGTTTAGGGGCAGAGTTGGGATTTTGAGAACCGCTGTGGCGATCAAGCGATTAGACAAGGAAGATAAAGAGTCTGCTAATGCATTTTGTAGAGAGCTGATGATTTCTAGCTCTCTTCACCACCCAAATGTAACACCTTTTGTGGGATTTTGCATCGATCCTGAGGACGGTTTGTTTTTGGTTTATAAGTATGTCTCGGGGGGAAGCTTGGAGTGTCATTTACACGAGAAAAAGGGGGGAGTTAAGGGCTCTGCAACACTTCCTTGGTTCGTAAGGCACAAGGTTGCTATTGGAATTGCTGAGGCAATTGCATATCTGCATAATGGAACTGAACGCTGTATTGTTCACAGAGATATCAAACCCTCGAACATTCTCCTTTCGTCCAAGAATACTGCCAAGCTATGTGATTTTGGATTAGCCACTTGGACTTCCGCACCTTCCGTCCCTTTCCTCTGCAAAACTGTCAAAGGAACATTTGGTTACTTGGCTCCTGAGTATTTCCAGCATGGGAAAATATCCGATAAAACTGATGTGTATGCTTTTGGGGTGGTCTTGCTGGAATTAATAACTGGTAGGAAGCCGATTGAAGAAAGAAGGCCACAAGGAGAAGAAAGCTTGGTTCTATGGGCAAAGCCCCTCTTGTGTAAAGGGAAAGGAGCTATTGAGGAGCTGCTTGATCCACATATAAAATGCACTTCGAGAAATTCAAATCAAATAGCACGGATGATTGAAGCTGCAGCTGCCTCCATAACGAGTGAAGAATCCCGAAGACCGAGCATTTGTGAGATAATGGCAATACTTAAAGGTGAAGAAGAATGTATCGTTTCCAAGAGGAAGAGGCCTAGTTTTCTGGGGAGTGGACTGGTCATTGATTGTCATTCTCAATTACAGCAAACGAAAAGCGAGATGCAGAGTCACCTAGCTTTGGCTATGTTAGGAGTTTCCGAGTTTGAAGACGATGATCACCTTTGCACTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

533

Amino Acids

59.05

Weight (kDa)

8.81

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	194 - 470	1.1e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	196 - 407	4.5e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66460 AT1G66460 AT1G66460 AT5G37790
fragaria_vesca	FvH4_1g28910 FvH4_1g28910
malus_domestica	MD09G1262600.v1.1 MD17G1257500.v1.1
prunus_persica	Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1
pyrus_communis	pycom09g17690 pycom17g25960
rosa_chinensis	RchiOBHm_Chr3g0493411
rosa_laevigata	RLG00000022715
rosa_multiflora	Rmu_sc0000828.1_g000022
rosa_roxburghii	Rroxscaffold_6G00391600
rosa_rugosa	Rorug03G0260900
rosa_samantha	Rh3AG310000 Rh3BG346100 Rh3CG343500 Rh3DG345100
rosa_wichuraiana	Rw3G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AciI	CCGC	7 cut(s)	237, 293, 303, 411, 414, 651, 1050
AclWI	GGATC	3 cut(s)	326, 770, 1289
AcsI	RAATTY	4 cut(s)	262, 436, 555, 1321
AfiI	CCNNNNNNNGG	4 cut(s)	357, 761, 785, 1543
AgsI	TTSAA	4 cut(s)	1205, 1326, 1349, 1571
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
Alw21I	GWGCWC	2 cut(s)	273, 407
Alw26I	GTCTC	1 cut(s)	817
AlwI	GGATC	3 cut(s)	326, 770, 1289
AlwNI	CAGNNNCTG	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	814
AoxI	GGCC	4 cut(s)	162, 311, 1214, 1457
ApeKI	GCWGC	7 cut(s)	286, 416, 563, 1288, 1352, 1355, 1358
ApoI	RAATTY	4 cut(s)	262, 436, 555, 1321
ArsI	GACNNNNNNTTYG	2 cut(s)	1380, 1412
AseI	ATTAAT	1 cut(s)	1181
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	8 cut(s)	16, 89, 445, 563, 728, 1436, 1526, 1574
AsuII	TTCGAA	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	814
AxyI	CCTNAGG	1 cut(s)	780
BanII	GRGCYC	2 cut(s)	407, 869
BauI	CACGAG	1 cut(s)	842
BbsI	GAAGAC	3 cut(s)	212, 1393, 1578
Bbv12I	GWGCWC	2 cut(s)	273, 407
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	7 cut(s)	273, 403, 575, 1275, 1339, 1345, 1367
BceAI	ACGGC	1 cut(s)	241
BclI	TGATCA	2 cut(s)	534, 1579
BcoDI	GTCTC	1 cut(s)	817
BfaI	CTAG	3 cut(s)	726, 1461, 1538
BfmI	CTRYAG	1 cut(s)	1353
BisI	GCNGC	9 cut(s)	238, 287, 414, 417, 564, 1289, 1353, 1356, 1359
BlsI	GCNGC	9 cut(s)	239, 288, 415, 418, 565, 1290, 1354, 1357, 1360
BmeT110I	CYCGRG	1 cut(s)	814
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	1107
BmsI	GCATC	2 cut(s)	780, 1515
BpiI	GAAGAC	3 cut(s)	212, 1393, 1578
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	918
Bpu14I	TTCGAA	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	421
Bsa29I	ATCGAT	1 cut(s)	774
BsaJI	CCNNGG	2 cut(s)	13, 881
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 389, 419
Bsc4I	CCNNNNNNNGG	4 cut(s)	357, 761, 785, 1543
Bse1I	ACTGG	2 cut(s)	1192, 1485
Bse21I	CCTNAGG	1 cut(s)	780
BseCI	ATCGAT	1 cut(s)	774
BseDI	CCNNGG	2 cut(s)	13, 881
BseGI	GGATG	1 cut(s)	1347
BseLI	CCNNNNNNNGG	4 cut(s)	357, 761, 785, 1543
BseMII	CTCAG	4 cut(s)	389, 771, 909, 1101
BseNI	ACTGG	2 cut(s)	1192, 1485
BseXI	GCAGC	7 cut(s)	273, 403, 575, 1275, 1339, 1345, 1367
BshFI	GGCC	4 cut(s)	164, 313, 1216, 1459
BshVI	ATCGAT	1 cut(s)	774
BsiHKAI	GWGCWC	2 cut(s)	273, 407
BsiHKCI	CYCGRG	1 cut(s)	814
BsiSI	CCGG	3 cut(s)	187, 300, 314
BslFI	GGGAC	1 cut(s)	1046
BslI	CCNNNNNNNGG	4 cut(s)	357, 761, 785, 1543
BsmAI	GTCTC	1 cut(s)	817
BsmFI	GGGAC	1 cut(s)	1046
BsnI	GGCC	4 cut(s)	164, 313, 1216, 1459
BsoBI	CYCGRG	1 cut(s)	814
Bsp119I	TTCGAA	1 cut(s)	581
Bsp1286I	GDGCHC	3 cut(s)	273, 407, 869
Bsp143I	GATC	6 cut(s)	331, 534, 660, 775, 1294, 1579
BspACI	CCGC	7 cut(s)	237, 293, 303, 411, 414, 651, 1050
BspANI	GGCC	4 cut(s)	164, 313, 1216, 1459
BspCNI	CTCAG	4 cut(s)	388, 772, 910, 1102
BspDI	ATCGAT	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	1107
BspMAI	CTGCAG	1 cut(s)	1357
BspPI	GGATC	3 cut(s)	326, 770, 1289
BspT104I	TTCGAA	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	1192, 1485
BssECI	CCNNGG	2 cut(s)	13, 881
BssMI	GATC	6 cut(s)	331, 534, 660, 775, 1294, 1579
BssSI	CACGAG	1 cut(s)	842
BssT1I	CCWWGG	2 cut(s)	13, 881
Bst2BI	CACGAG	1 cut(s)	842
Bst4CI	ACNGT	4 cut(s)	424, 551, 788, 1081
Bst6I	CTCTTC	3 cut(s)	66, 738, 1448
BstBI	TTCGAA	1 cut(s)	581
BstC8I	GCNNGC	2 cut(s)	166, 291
BstDEI	CTNAG	4 cut(s)	375, 780, 918, 1110
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	1347
BstKTI	GATC	6 cut(s)	334, 537, 663, 778, 1297, 1582
BstMAI	GTCTC	1 cut(s)	817
BstMBI	GATC	6 cut(s)	331, 534, 660, 775, 1294, 1579
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 1358
BstSFI	CTRYAG	1 cut(s)	1353
BstV1I	GCAGC	7 cut(s)	273, 403, 575, 1275, 1339, 1345, 1367
BstV2I	GAAGAC	3 cut(s)	212, 1393, 1578
Bsu15I	ATCGAT	1 cut(s)	774
Bsu36I	CCTNAGG	1 cut(s)	780
BsuRI	GGCC	4 cut(s)	164, 313, 1216, 1459
BsuTUI	ATCGAT	1 cut(s)	774
BtsCI	GGATG	1 cut(s)	1347
BtsIMutI	CAGTG	1 cut(s)	530
Cac8I	GCNNGC	2 cut(s)	166, 291
CaiI	CAGNNNCTG	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	774
CviAII	CATG	2 cut(s)	394, 1124
DdeI	CTNAG	4 cut(s)	375, 780, 918, 1110
DpnI	GATC	6 cut(s)	333, 536, 662, 777, 1296, 1581
DpnII	GATC	6 cut(s)	331, 534, 660, 775, 1294, 1579
Eam1104I	CTCTTC	3 cut(s)	66, 738, 1448
EarI	CTCTTC	3 cut(s)	66, 738, 1448
EciI	GGCGGA	2 cut(s)	308, 400
Ecl136II	GAGCTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	13, 881
Eco147I	AGGCCT	1 cut(s)	1459
Eco24I	GRGCYC	2 cut(s)	407, 869
Eco32I	GATATC	1 cut(s)	973
Eco53kI	GAGCTC	1 cut(s)	405
Eco81I	CCTNAGG	1 cut(s)	780
Eco88I	CYCGRG	1 cut(s)	814
EcoICRI	GAGCTC	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	973
EcoT14I	CCWWGG	2 cut(s)	13, 881
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	407, 869
ErhI	CCWWGG	2 cut(s)	13, 881
FaeI	CATG	2 cut(s)	397, 1127
FalI	AAGNNNNNCTT	2 cut(s)	1241, 1273
FaqI	GGGAC	1 cut(s)	1046
FatI	CATG	2 cut(s)	393, 1123
FauI	CCCGC	1 cut(s)	296
FbaI	TGATCA	2 cut(s)	534, 1579
Fnu4HI	GCNGC	9 cut(s)	238, 287, 414, 417, 564, 1289, 1353, 1356, 1359
FokI	GGATG	1 cut(s)	1354
FriOI	GRGCYC	2 cut(s)	407, 869
Fsp4HI	GCNGC	9 cut(s)	238, 287, 414, 417, 564, 1289, 1353, 1356, 1359
FspBI	CTAG	3 cut(s)	726, 1461, 1538
GluI	GCNGC	9 cut(s)	238, 287, 414, 417, 564, 1289, 1353, 1356, 1359
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	4 cut(s)	164, 313, 1216, 1459
HapII	CCGG	3 cut(s)	187, 300, 314
Hin1II	CATG	2 cut(s)	397, 1127
HindIII	AAGCTT	2 cut(s)	823, 1231
HinfI	GANTC	7 cut(s)	120, 296, 389, 458, 689, 1379, 1531
HpaII	CCGG	3 cut(s)	187, 300, 314
HphI	GGTGA	8 cut(s)	16, 89, 445, 563, 728, 1436, 1526, 1574
Hpy166II	GTNNAC	3 cut(s)	346, 964, 1478
Hpy188I	TCNGA	4 cut(s)	457, 539, 1138, 1564
Hpy188III	TCNNGA	5 cut(s)	33, 779, 1109, 1317, 1383
Hpy8I	GTNNAC	3 cut(s)	346, 964, 1478
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	1065, 1206
HpyCH4III	ACNGT	4 cut(s)	424, 551, 788, 1081
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 1358
HpyF3I	CTNAG	4 cut(s)	375, 780, 918, 1110
Hsp92II	CATG	2 cut(s)	397, 1127
Ksp22I	TGATCA	2 cut(s)	534, 1579
Kzo9I	GATC	6 cut(s)	331, 534, 660, 775, 1294, 1579
LmnI	GCTCC	8 cut(s)	55, 151, 410, 507, 605, 1111, 1274, 1285
Lsp1109I	GCAGC	7 cut(s)	273, 403, 575, 1275, 1339, 1345, 1367
LweI	GCATC	2 cut(s)	780, 1515
MaeI	CTAG	3 cut(s)	726, 1461, 1538
MaeIII	GTNAC	3 cut(s)	748, 1097, 1532
MalI	GATC	6 cut(s)	333, 536, 662, 777, 1296, 1581
MboI	GATC	6 cut(s)	331, 534, 660, 775, 1294, 1579
MfeI	CAATTG	1 cut(s)	924
MhlI	GDGCHC	3 cut(s)	273, 407, 869
MluCI	AATT	9 cut(s)	262, 436, 555, 574, 912, 924, 1178, 1321, 1502
MlyI	GAGTC	3 cut(s)	305, 698, 1540
MmeI	TCCRAC	1 cut(s)	480
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	3 cut(s)	861, 1181, 1419
MslI	CAYNNNNRTG	1 cut(s)	744
MspA1I	CMGCKG	3 cut(s)	416, 653, 1358
MspI	CCGG	3 cut(s)	187, 300, 314
MunI	CAATTG	1 cut(s)	924
MwoI	GCNNNNNNNGC	2 cut(s)	234, 1358
NdeII	GATC	6 cut(s)	331, 534, 660, 775, 1294, 1579
NlaIII	CATG	2 cut(s)	397, 1127
NlaIV	GGNNCC	1 cut(s)	1107
NmuCI	GTSAC	1 cut(s)	1532
NsiI	ATGCAT	1 cut(s)	703
NspV	TTCGAA	1 cut(s)	581
PceI	AGGCCT	1 cut(s)	1459
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	4 cut(s)	120, 389, 458, 1379
PkrI	GCNGC	9 cut(s)	239, 288, 415, 418, 565, 1290, 1354, 1357, 1360
PleI	GAGTC	3 cut(s)	304, 697, 1539
PpsI	GAGTC	3 cut(s)	304, 697, 1539
PshBI	ATTAAT	1 cut(s)	1181
PsiI	TTATAA	1 cut(s)	804
Psp124BI	GAGCTC	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	1107
PspPI	GGNCC	1 cut(s)	311
PstI	CTGCAG	1 cut(s)	1357
PstNI	CAGNNNCTG	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	1358
RseI	CAYNNNNRTG	1 cut(s)	744
SacI	GAGCTC	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	861, 1181, 1419
SatI	GCNGC	9 cut(s)	238, 287, 414, 417, 564, 1289, 1353, 1356, 1359
Sau3AI	GATC	6 cut(s)	331, 534, 660, 775, 1294, 1579
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	3 cut(s)	305, 698, 1540
SduI	GDGCHC	3 cut(s)	273, 407, 869
SfaNI	GCATC	2 cut(s)	780, 1515
SfcI	CTRYAG	1 cut(s)	1353
SfuI	TTCGAA	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	9 cut(s)	262, 436, 555, 574, 912, 924, 1178, 1321, 1502
SseBI	AGGCCT	1 cut(s)	1459
SsiI	CCGC	7 cut(s)	237, 293, 303, 411, 414, 651, 1050
SspMI	CTAG	3 cut(s)	726, 1461, 1538
SstI	GAGCTC	1 cut(s)	407
StuI	AGGCCT	1 cut(s)	1459
StyI	CCWWGG	2 cut(s)	13, 881
TaaI	ACNGT	4 cut(s)	424, 551, 788, 1081
TaqI	TCGA	6 cut(s)	381, 461, 581, 774, 983, 1316
TaqII	GACCGA	1 cut(s)	1405
TasI	AATT	9 cut(s)	262, 436, 555, 574, 912, 924, 1178, 1321, 1502
TauI	GCSGC	2 cut(s)	240, 416
TfiI	GAWTC	4 cut(s)	120, 389, 458, 1379
Tru1I	TTAA	3 cut(s)	861, 1181, 1419
Tru9I	TTAA	3 cut(s)	861, 1181, 1419
TscAI	CASTG	1 cut(s)	537
TseFI	GTSAC	1 cut(s)	1532
TseI	GCWGC	7 cut(s)	286, 416, 563, 1288, 1352, 1355, 1358
Tsp45I	GTSAC	1 cut(s)	1532
TspDTI	ATGAA	2 cut(s)	410, 491
TspGWI	ACGGA	2 cut(s)	1048, 1354
TspRI	CASTG	1 cut(s)	537
VspI	ATTAAT	1 cut(s)	1181
XagI	CCTNNNNNAGG	1 cut(s)	355
XapI	RAATTY	4 cut(s)	262, 436, 555, 1321
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	3 cut(s)	726, 1461, 1538
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.