Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008391

Physical Location & Seq

Genomic Coordinates Reverse (-)

25092416 .. 25092937

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0260900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCAGAGCTTCTAACACATCCAAAAGTCATGAAGAAGTTGCAGAATGAGGTGAGGGAAATAGTCGGAAATAAAGCCGACGTAACAGAAGATGATCTGGTGGGTATGCACTACTTGAGAGCAGTAATCAAGGAGACTCTTCGTTTACATCCACCGGTTCCCCTGTTACTGCCCAGGATGGCGACCCAAGATGTGAATGTGAATGGTTACAGCGTTAAGGCCAACACTCAAGTTCTGGTGAATGCATGGCAAATTGGAAGAGATCCCAAGTCGTACAGTAAACCAGAGAAGTATGAGCCAGAGAGGTTCTTGAATAGTGAGATAGATTTCAAAGGGACTGAATTTGAACTCATTCCATTTGGTGCCGGTAGACGAGGCTGCCCAGGCATTCCATTTGGTATGGTTGTTACTGAGATAGCTCTGGCAAGTATAGTACACAACTTTACTTGGTCATTGCCTGGTGATGAAAAATTGGAGGACTTAGACATGACTGAGTCCACGTACTGGTGCAGTCGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

173

Amino Acids

19.6

Weight (kDa)

5.61

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 163	3.7e-59	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66460 AT1G66460 AT1G66460 AT5G37790
fragaria_vesca	FvH4_1g28910 FvH4_1g28910
malus_domestica	MD09G1262600.v1.1 MD17G1257500.v1.1
prunus_persica	Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1
pyrus_communis	pycom09g17690 pycom17g25960
rosa_chinensis	RchiOBHm_Chr3g0493411
rosa_laevigata	RLG00000022715
rosa_multiflora	Rmu_sc0000828.1_g000022
rosa_roxburghii	Rroxscaffold_6G00391600
rosa_rugosa	Rorug03G0260900
rosa_samantha	Rh3AG310000 Rh3BG346100 Rh3CG343500 Rh3DG345100
rosa_wichuraiana	Rw3G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AccB7I	CCANNNNNTGG	1 cut(s)	504
AccI	GTMKAC	1 cut(s)	370
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	4 cut(s)	275, 435, 503, 517
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgeI	ACCGGT	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	313, 331, 347
AjnI	CCWGG	3 cut(s)	173, 382, 457
AluBI	AGCT	2 cut(s)	10, 419
AluI	AGCT	2 cut(s)	10, 419
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	341
AsiGI	ACCGGT	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	351
AsuHPI	GGTGA	3 cut(s)	64, 250, 473
BanI	GGYRCC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	3 cut(s)	175, 384, 459
BcoDI	GTCTC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	3 cut(s)	175, 384, 459
BmiI	GGNNCC	2 cut(s)	159, 364
BmrFI	CCNGG	3 cut(s)	175, 384, 459
BpuEI	CTTGAG	2 cut(s)	136, 213
BsaAI	YACGTR	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	173, 382
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse118I	RCCGGY	2 cut(s)	154, 365
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	3 cut(s)	175, 384, 459
BseDI	CCNNGG	2 cut(s)	173, 382
BseGI	GGATG	3 cut(s)	19, 148, 183
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	402, 483
BseNI	ACTGG	1 cut(s)	509
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	362
BshTI	ACCGGT	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	155, 366
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	2 cut(s)	247, 387
BsnI	GGCC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	94, 262
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	403, 484
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	159, 364
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	154, 365
BsrI	ACTGG	1 cut(s)	509
BssAI	RCCGGY	2 cut(s)	154, 365
BssECI	CCNNGG	2 cut(s)	173, 382
BssMI	GATC	2 cut(s)	94, 262
Bst2UI	CCWGG	3 cut(s)	175, 384, 459
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	144, 253
BstBAI	YACGTR	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	411, 481, 492
BstF5I	GGATG	3 cut(s)	19, 148, 183
BstKTI	GATC	2 cut(s)	97, 265
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	94, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	3 cut(s)	175, 384, 459
BstSCI	CCNGG	3 cut(s)	173, 382, 457
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	19, 148, 183
CciI	TCATGA	1 cut(s)	30
Cfr10I	RCCGGY	2 cut(s)	154, 365
Csp6I	GTAC	4 cut(s)	274, 434, 502, 516
CspAI	ACCGGT	1 cut(s)	154
CviAII	CATG	3 cut(s)	31, 246, 487
CviJI	RGCY	6 cut(s)	10, 77, 221, 298, 378, 419
CviKI_1	RGCY	6 cut(s)	10, 77, 221, 298, 378, 419
CviQI	GTAC	4 cut(s)	274, 434, 502, 516
DdeI	CTNAG	3 cut(s)	411, 481, 492
DpnI	GATC	2 cut(s)	96, 264
DpnII	GATC	2 cut(s)	94, 262
Eam1104I	CTCTTC	2 cut(s)	144, 253
EarI	CTCTTC	2 cut(s)	144, 253
EcoRII	CCWGG	3 cut(s)	173, 382, 457
EcoT22I	ATGCAT	1 cut(s)	247
FaeI	CATG	3 cut(s)	34, 249, 490
FaiI	YATR	8 cut(s)	32, 107, 247, 294, 401, 431, 488, 520
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	3 cut(s)	30, 245, 486
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	3 cut(s)	6, 135, 190
Fsp4HI	GCNGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	2 cut(s)	155, 366
Hin1II	CATG	3 cut(s)	34, 249, 490
HinfI	GANTC	2 cut(s)	136, 494
HpaII	CCGG	2 cut(s)	155, 366
HphI	GGTGA	3 cut(s)	64, 250, 473
Hpy166II	GTNNAC	5 cut(s)	146, 281, 371, 436, 498
Hpy188I	TCNGA	2 cut(s)	7, 68
Hpy188III	TCNNGA	2 cut(s)	31, 310
Hpy8I	GTNNAC	5 cut(s)	146, 281, 371, 436, 498
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	2 cut(s)	81, 500
HpyCH4V	TGCA	4 cut(s)	43, 109, 245, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	3 cut(s)	411, 481, 492
HpySE526I	ACGT	2 cut(s)	81, 500
Hsp92II	CATG	3 cut(s)	34, 249, 490
Kzo9I	GATC	2 cut(s)	94, 262
Lsp1109I	GCAGC	1 cut(s)	365
MaeII	ACGT	2 cut(s)	81, 500
MaeIII	GTNAC	4 cut(s)	82, 165, 206, 406
MalI	GATC	2 cut(s)	96, 264
MboI	GATC	2 cut(s)	94, 262
MboII	GAAGA	4 cut(s)	46, 101, 131, 270
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	3 cut(s)	252, 341, 470
MlyI	GAGTC	2 cut(s)	130, 503
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	5 cut(s)	43, 48, 297, 368, 469
Mph1103I	ATGCAT	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	155, 366
MspR9I	CCNGG	3 cut(s)	175, 384, 459
Mva1269I	GAATGC	2 cut(s)	247, 387
MvaI	CCWGG	3 cut(s)	175, 384, 459
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeII	GATC	2 cut(s)	94, 262
NlaIII	CATG	3 cut(s)	34, 249, 490
NlaIV	GGNNCC	2 cut(s)	159, 364
NsiI	ATGCAT	1 cut(s)	247
PagI	TCATGA	1 cut(s)	30
PctI	GAATGC	2 cut(s)	247, 387
PdmI	GAANNNNTTC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	493
PflMI	CCANNNNNTGG	1 cut(s)	504
PinAI	ACCGGT	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	2 cut(s)	130, 502
PpsI	GAGTC	2 cut(s)	130, 502
Ppu21I	YACGTR	1 cut(s)	501
Psp6I	CCWGG	3 cut(s)	173, 382, 457
PspGI	CCWGG	3 cut(s)	173, 382, 457
PspN4I	GGNNCC	2 cut(s)	159, 364
PsuI	RGATCY	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	493
RsaI	GTAC	4 cut(s)	275, 435, 503, 517
RsaNI	GTAC	4 cut(s)	274, 434, 502, 516
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	2 cut(s)	94, 262
SchI	GAGTC	2 cut(s)	130, 503
ScrFI	CCNGG	3 cut(s)	175, 384, 459
SetI	ASST	6 cut(s)	12, 54, 84, 308, 421, 503
SmlI	CTYRAG	2 cut(s)	115, 228
SmoI	CTYRAG	2 cut(s)	115, 228
Sse9I	AATT	3 cut(s)	252, 341, 470
StyD4I	CCNGG	3 cut(s)	173, 382, 457
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	2 cut(s)	84, 503
TasI	AATT	3 cut(s)	252, 341, 470
TatI	WGTACW	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	2 cut(s)	47, 480
Tth111I	GACNNNGTC	1 cut(s)	493
Van91I	CCANNNNNTGG	1 cut(s)	504
XapI	RAATTY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.