Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008391

Physical Location & Seq

Genomic Coordinates Forward (+)

10171455 .. 10173692

Gene Structure 2238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGCTTAGGGAGCTTGGCCTGTCCTGTTTTCTTCCTCCACCTCCACAAAGAAGAACCCAAAATGAAGATGATGACGACAGCAATGGCAGCAAGAAGATGAGTTTGGAGCACAACAAGGCATGGCTGCTAGCAGAGTCAGGTGGGTGTGCAGCAGACTTGACTAGTGCTGATCCACAATCAGTTCACTCCTCTTTCAGGTTCAGCTTCTGCTCTCAAGTTGAGCTTGAGTCCTTGAACATGACCTCTTCTTCTGCTGCCACTGTTCTGATGGTCAACTTGGACAATGGCTTGTGCGAGTCCAAAGCTAAAGAATTGAAATGGAGGAGATTCGAGTCGTTAGAGAGAAGCATATCCCCAATGGCCAACACTTTGGTTCGATTCAGCTACGCCCAAATTCATGCCGCCACTCGCAATTTCTCACAAGGCAGAGTTTTGGGGAGAGGAGCTTTGAGCTGTGTGTTTAGGGGTAGAGTTGGGATTTTGAGGACAGTTGTGGCGATCAAGCGATTGGACAAGGAAGATAAGGAGTCTTCTAAGGCGTTTTGTAGAGAGTTGATGATTTCTAGCTCTCTTCACAACCCAAATGTAACACCTCTTTTGGGGTTTTGCATAGATCCAGAGGAGGGCTTGTTTTTGGTTTACAATAATTTATCACACACTCCATTTGCAGAGAAAAAGAGGGGAGTGCAGGGCTCTTCAGCACTTTCTTGGTCTGTAAGGCATAAGGTTGCAATAGGAGTAGCAGAGGCAATTGCATATCTACATAATGGAACCGAAAGGTGCATTGTTCACAGAGACATCAAACCCTCAAACATTCTCCTTTCTTCGAAGAAGACACCCAAGTTATGTGATTTTGGATTAGCCACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACGGTCAAAGGAACATTTGGTTACTTAGCTCCTGAGTATTTCCAACATGGAAAGATATCAGATAAAACTGATGTTTATGCTTTTGGTGTCGTCTTGCTGGAGTTGATAACGGGAAGGAAGCCAATTGAAGCAAGAAGGCCACAAGGAGAAGAAAACTTGGTTCTGTGGGCAAAACCTGTCTTGCATAAAGGTAAAGGTGCTATTGAAGAGTTGCTTGATCCTCGGCTAAAATGCACTTTGGCAAATTCAAATCAAATAGGGCGGATGATTGAAGCTGCAGCCGCCTGCATAACTAGTGAAGAATCTCGGAGGCCAAACATTATTGAGATAATTGCAATACTTAAAGGGGAAGAAGAGCCTATTTACTCCAAGAGAAAGAAGTCTGGTTTTCTGGGAAATGGGTTGGTCGTTGATTGTTATTCTCAATTACAGCAAACAAATAGTGAGATGAAGAGTCACCTAGCTTTGGCTATGCTCGGAGTTTCTGAGTTTGAGGATGATGATCACCTTTACGGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

474

Amino Acids

52.47

Weight (kDa)

8.58

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	140 - 356	6.6e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	141 - 350	5.3e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66460 AT1G66460 AT1G66460 AT5G37790
fragaria_vesca	FvH4_1g28910 FvH4_1g28910
malus_domestica	MD09G1262600.v1.1 MD17G1257500.v1.1
prunus_persica	Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1 Prupe.3G160300_v2.0.a1
pyrus_communis	pycom09g17690 pycom17g25960
rosa_chinensis	RchiOBHm_Chr3g0493411
rosa_laevigata	RLG00000022715
rosa_multiflora	Rmu_sc0000828.1_g000022
rosa_roxburghii	Rroxscaffold_6G00391600
rosa_rugosa	Rorug03G0260900
rosa_samantha	Rh3AG310000 Rh3BG346100 Rh3CG343500 Rh3DG345100
rosa_wichuraiana	Rw3G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	402, 1165, 1185
AclWI	GGATC	3 cut(s)	164, 608, 1115
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	393, 1147
AcuI	CTGAAG	2 cut(s)	681, 867
AfiI	CCNNNNNNNGG	4 cut(s)	195, 599, 623, 1369
AgsI	TTSAA	6 cut(s)	235, 316, 1031, 1109, 1152, 1175
AhlI	ACTAGT	2 cut(s)	161, 1196
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	3 cut(s)	164, 608, 1115
AlwNI	CAGNNNCTG	1 cut(s)	207
AoxI	GGCC	4 cut(s)	16, 360, 1040, 1214
ApeKI	GCWGC	6 cut(s)	87, 124, 149, 254, 1178, 1181
ApoI	RAATTY	2 cut(s)	393, 1147
AsuHPI	GGTGA	2 cut(s)	1352, 1400
AsuII	TTCGAA	1 cut(s)	827
AsuNHI	GCTAGC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	695
BbsI	GAAGAC	2 cut(s)	522, 839
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	6 cut(s)	99, 111, 161, 241, 1165, 1193
BccI	CCATC	1 cut(s)	262
BclI	TGATCA	1 cut(s)	1405
BcoDI	GTCTC	1 cut(s)	789
BcuI	ACTAGT	2 cut(s)	161, 1196
BfaI	CTAG	5 cut(s)	128, 162, 564, 1197, 1364
BfmI	CTRYAG	1 cut(s)	1179
BisI	GCNGC	8 cut(s)	88, 125, 150, 255, 402, 1179, 1182, 1185
BlsI	GCNGC	8 cut(s)	89, 126, 151, 256, 403, 1180, 1183, 1186
BmiI	GGNNCC	1 cut(s)	772
BmtI	GCTAGC	1 cut(s)	131
BpiI	GAAGAC	2 cut(s)	522, 839
BpmI	CTGGAG	1 cut(s)	1022
Bpu10I	CCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	827
BpuEI	CTTGAG	2 cut(s)	198, 245
BsaBI	GATNNNNATC	1 cut(s)	1404
BsaJI	CCNNGG	1 cut(s)	1124
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 599, 623, 1369
Bse3DI	GCAATG	1 cut(s)	88
Bse8I	GATNNNNATC	1 cut(s)	1404
BseDI	CCNNGG	1 cut(s)	1124
BseGI	GGATG	2 cut(s)	1173, 1405
BseJI	GATNNNNATC	1 cut(s)	1404
BseLI	CCNNNNNNNGG	4 cut(s)	195, 599, 623, 1369
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	927, 1380
BseRI	GAGGAG	4 cut(s)	178, 337, 456, 635
BseXI	GCAGC	6 cut(s)	99, 111, 161, 241, 1165, 1193
BsgI	GTGCAG	3 cut(s)	168, 707, 861
BshFI	GGCC	4 cut(s)	18, 362, 1042, 1216
BsiHKAI	GWGCWC	1 cut(s)	111
BslI	CCNNNNNNNGG	4 cut(s)	195, 599, 623, 1369
BsmAI	GTCTC	1 cut(s)	789
BsnI	GGCC	4 cut(s)	18, 362, 1042, 1216
Bsp119I	TTCGAA	1 cut(s)	827
Bsp1286I	GDGCHC	2 cut(s)	111, 695
Bsp143I	GATC	5 cut(s)	169, 498, 613, 1120, 1405
BspACI	CCGC	3 cut(s)	402, 1165, 1185
BspANI	GGCC	4 cut(s)	18, 362, 1042, 1216
BspCNI	CTCAG	2 cut(s)	928, 1381
BspLI	GGNNCC	1 cut(s)	772
BspMAI	CTGCAG	1 cut(s)	1183
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	3 cut(s)	164, 608, 1115
BspQI	GCTCTTC	2 cut(s)	700, 1251
BspT104I	TTCGAA	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	1124
BssMI	GATC	5 cut(s)	169, 498, 613, 1120, 1405
Bst4CI	ACNGT	3 cut(s)	262, 490, 907
Bst6I	CTCTTC	6 cut(s)	250, 576, 700, 1104, 1251, 1349
BstBI	TTCGAA	1 cut(s)	827
BstC8I	GCNNGC	2 cut(s)	129, 1189
BstDEI	CTNAG	5 cut(s)	5, 534, 928, 936, 1389
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	1173, 1405
BstKTI	GATC	5 cut(s)	172, 501, 616, 1123, 1408
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	5 cut(s)	169, 498, 613, 1120, 1405
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 87, 1184
BstSFI	CTRYAG	1 cut(s)	1179
BstV1I	GCAGC	6 cut(s)	99, 111, 161, 241, 1165, 1193
BstV2I	GAAGAC	2 cut(s)	522, 839
BstX2I	RGATCY	1 cut(s)	613
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	4 cut(s)	18, 362, 1042, 1216
BtsCI	GGATG	2 cut(s)	1173, 1405
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	129, 1189
CaiI	CAGNNNCTG	1 cut(s)	207
CviAII	CATG	5 cut(s)	120, 238, 398, 867, 950
DdeI	CTNAG	5 cut(s)	5, 534, 928, 936, 1389
DpnI	GATC	5 cut(s)	171, 500, 615, 1122, 1407
DpnII	GATC	5 cut(s)	169, 498, 613, 1120, 1405
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	6 cut(s)	250, 576, 700, 1104, 1251, 1349
EarI	CTCTTC	6 cut(s)	250, 576, 700, 1104, 1251, 1349
EciI	GGCGGA	1 cut(s)	1180
Eco24I	GRGCYC	1 cut(s)	695
Eco32I	GATATC	1 cut(s)	960
Eco57I	CTGAAG	2 cut(s)	681, 867
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	960
EcoT38I	GRGCYC	1 cut(s)	695
FaeI	CATG	5 cut(s)	123, 241, 401, 870, 953
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 1101, 1133
FatI	CATG	5 cut(s)	119, 237, 397, 866, 949
FbaI	TGATCA	1 cut(s)	1405
Fnu4HI	GCNGC	8 cut(s)	88, 125, 150, 255, 402, 1179, 1182, 1185
FokI	GGATG	2 cut(s)	1180, 1412
FriOI	GRGCYC	1 cut(s)	695
Fsp4HI	GCNGC	8 cut(s)	88, 125, 150, 255, 402, 1179, 1182, 1185
FspBI	CTAG	5 cut(s)	128, 162, 564, 1197, 1364
GluI	GCNGC	8 cut(s)	88, 125, 150, 255, 402, 1179, 1182, 1185
GsuI	CTGGAG	1 cut(s)	1022
HaeIII	GGCC	4 cut(s)	18, 362, 1042, 1216
Hin1II	CATG	5 cut(s)	123, 241, 401, 870, 953
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	9 cut(s)	134, 227, 296, 327, 332, 378, 527, 1205, 1357
HphI	GGTGA	2 cut(s)	1352, 1400
Hpy166II	GTNNAC	4 cut(s)	184, 274, 640, 790
Hpy188I	TCNGA	5 cut(s)	267, 964, 1212, 1382, 1390
Hpy188III	TCNNGA	2 cut(s)	617, 935
Hpy8I	GTNNAC	4 cut(s)	184, 274, 640, 790
HpyAV	CCTTC	3 cut(s)	891, 1011, 1032
HpyCH4III	ACNGT	3 cut(s)	262, 490, 907
HpyCH4IV	ACGT	1 cut(s)	1420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 87, 1184
HpyF3I	CTNAG	5 cut(s)	5, 534, 928, 936, 1389
HpySE526I	ACGT	1 cut(s)	1420
Hsp92II	CATG	5 cut(s)	123, 241, 401, 870, 953
Ksp22I	TGATCA	1 cut(s)	1405
Kzo9I	GATC	5 cut(s)	169, 498, 613, 1120, 1405
LguI	GCTCTTC	2 cut(s)	700, 1251
LmnI	GCTCC	4 cut(s)	10, 106, 443, 937
Lsp1109I	GCAGC	6 cut(s)	99, 111, 161, 241, 1165, 1193
MaeI	CTAG	5 cut(s)	128, 162, 564, 1197, 1364
MaeII	ACGT	1 cut(s)	1420
MaeIII	GTNAC	3 cut(s)	586, 923, 1358
MalI	GATC	5 cut(s)	171, 500, 615, 1122, 1407
MboI	GATC	5 cut(s)	169, 498, 613, 1120, 1405
MfeI	CAATTG	2 cut(s)	750, 1026
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	2 cut(s)	111, 695
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	9 cut(s)	311, 393, 412, 646, 750, 1026, 1147, 1233, 1328
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	6 cut(s)	143, 236, 305, 341, 536, 1366
MmeI	TCCRAC	1 cut(s)	970
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	1 cut(s)	1245
Msp20I	TGGCCA	1 cut(s)	362
MunI	CAATTG	2 cut(s)	750, 1026
MwoI	GCNNNNNNNGC	3 cut(s)	10, 87, 1184
NdeII	GATC	5 cut(s)	169, 498, 613, 1120, 1405
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	5 cut(s)	123, 241, 401, 870, 953
NlaIV	GGNNCC	1 cut(s)	772
NmeAIII	GCCGAG	1 cut(s)	1105
NmuCI	GTSAC	1 cut(s)	1358
NspV	TTCGAA	1 cut(s)	827
PciSI	GCTCTTC	2 cut(s)	700, 1251
PfeI	GAWTC	3 cut(s)	327, 378, 1205
PkrI	GCNGC	8 cut(s)	89, 126, 151, 256, 403, 1180, 1183, 1186
PleI	GAGTC	6 cut(s)	142, 235, 304, 340, 535, 1365
PpsI	GAGTC	6 cut(s)	142, 235, 304, 340, 535, 1365
PspN4I	GGNNCC	1 cut(s)	772
PstI	CTGCAG	1 cut(s)	1183
PstNI	CAGNNNCTG	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	613
SapI	GCTCTTC	2 cut(s)	700, 1251
SaqAI	TTAA	1 cut(s)	1245
SatI	GCNGC	8 cut(s)	88, 125, 150, 255, 402, 1179, 1182, 1185
Sau3AI	GATC	5 cut(s)	169, 498, 613, 1120, 1405
SchI	GAGTC	6 cut(s)	143, 236, 305, 341, 536, 1366
SduI	GDGCHC	2 cut(s)	111, 695
SfcI	CTRYAG	1 cut(s)	1179
SfuI	TTCGAA	1 cut(s)	827
SmlI	CTYRAG	2 cut(s)	213, 224
SmoI	CTYRAG	2 cut(s)	213, 224
SpeI	ACTAGT	2 cut(s)	161, 1196
Sse9I	AATT	9 cut(s)	311, 393, 412, 646, 750, 1026, 1147, 1233, 1328
SsiI	CCGC	3 cut(s)	402, 1165, 1185
SspMI	CTAG	5 cut(s)	128, 162, 564, 1197, 1364
TaaI	ACNGT	3 cut(s)	262, 490, 907
TaiI	ACGT	1 cut(s)	1423
TaqI	TCGA	3 cut(s)	330, 376, 827
TasI	AATT	9 cut(s)	311, 393, 412, 646, 750, 1026, 1147, 1233, 1328
TauI	GCSGC	2 cut(s)	404, 1187
TfiI	GAWTC	3 cut(s)	327, 378, 1205
Tru1I	TTAA	1 cut(s)	1245
Tru9I	TTAA	1 cut(s)	1245
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	1358
TseI	GCWGC	6 cut(s)	87, 124, 149, 254, 1178, 1181
Tsp45I	GTSAC	1 cut(s)	1358
TspDTI	ATGAA	3 cut(s)	78, 386, 1367
TspRI	CASTG	1 cut(s)	265
XagI	CCTNNNNNAGG	1 cut(s)	193
XapI	RAATTY	2 cut(s)	393, 1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XspI	CTAG	5 cut(s)	128, 162, 564, 1197, 1364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.