FvH4_1g29400

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008113
Physical Location & Seq
Reverse (-)
22407020 .. 22421541
14522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29400.t1

Sequence Viewer

Length: 1587 bp
ATGAGCAACAACGAAGATTTTGACGGACATATACTATCCGAGAAGCTCTCTAAACTCAACAATTCACAACAAAGCATCGAATCTCTTTCTCGTTGGTGTATTTCTAACCGGAAGAAAGCAAAGCAGATTGTTGAAACATGGGACAAGTATTTCAATTTGGCCCAAAAAGATCAACGTGTGTCTTTCCTATATCTGGCAAATGACATATTACAAAATAGTAGGCGAAAGGGCAGTGAGTTTGTGAATGAATTTTGGAAAGTTCTTCCTGCAGCTCTCAAGCACGTCTATGAAAATGGTGATGACCATGGAAAGAAAGCAGCCATGAGACTGGTTGACATATGGGATGAACGGAAGGTTTTTGGTTCTCGAGGGCAAAGTCTTAAAGATGAAATGATGGGAAAGAATCTTCCTCCACCTGTAAGCAATGGAAGGATTTCAAATCCTATCAAGATTGTGAAGAGAGATGCACACTCAGTTCGAATTAAATTGGCTGTTGGAGGTCTACCAGAAAAGTTACTCACTGCATTTCAACCTGTTCTTGATGAACATGCTACCGAAGAAGGTGCTTTAAACAAGTGTAGTGTTGCTGCACGATATGTGGGTAAAATTGAGGAAGATGTTGAAAACAACTTGACTCAAGGGATTCAGCAAAAATCTACGTTGTTGGATGAGCTGAAGAAGCAGGAAGATATACTTAATCTATCTATTGAGCACCTTGAAGCTGCGGCAGCAACAAGATCTGCCTTGGTTTTGCAGCTTAAAGAAGCACTTCAGGACCAAGAACCAAAGCTGGAAGCTGTTCGCACTCGGTTACAAGTCGCGCAGCATCAGATAGAGAAAGTAAGCAATATTAGAAGGAGACTGTCTTTATTGCCACAAAGCAATGTCATTAACATGGCAGCTGAATCTACAAGGGTGTTAGAACCAACTGGCATCCAGTCGCAGCCTCCTAGTCAACCTTTTTCTTTTGCTCCTGTGAAAACTGATGAAGAGAACAAGAGAGCAGCAGCAGCAGCTGTTGCTGCTAAGCTAGCTGCTTCCACATCCTCGGCACAGATGTTGACTTCTGTTCTTTCTTCTCTGGTCGCTGAAGAAGCTGCCTCTATGTTTTCTCCAGAAAAAAGGCAGAAACTTGAGAAATCTATGTCTGTTTCTGATAGTAATGCTGATGTTGGCAGTGCAGCCTATTTTAACCCTCTACAACAGCAAACAATGACGAGTGTGCCATTGGCACCATCGACAAGCATGCAAACTATGTCCCAAGCTAACCAGATGCAAACTCCTTTTGGTCCGCCCCCACCACCTCCAGCACCATCACAATCTTCTGCAACTCCACCATCAAATCAGTATGTCCAAACTGGTGGCCATATGGTTGGCGTAATGCCTTATGGATATGGATCAAATAATTTGCCACCTCCGCCTCCCAGGCCAATGGGTATGTCGAGGCCCACACAACCACAACAGCAGTCACTGCCCCAGCAGCAGCAGCAGGTGCAGCCAGCTAGTGGAGGTTATTATCAAACGTTGGGTATGGGGTTCTATGGGCAAAGTAATCAGTCAGCTTCGCAGCCAGTTCCTCGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

529

Amino Acids

58.06

Weight (kDa)

9.0

Isoelectric Point (pI)

65.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 11 - 122 5.6e-39 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1480
Acc36I ACCTGC 1 cut(s) 1480
AccB1I GGYRCC 1 cut(s) 1231
AccB7I CCANNNNNTGG 1 cut(s) 1505
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 821
AciI CCGC 3 cut(s) 725, 1292, 1418
AclI AACGTT 1 cut(s) 1523
AclWI GGATC 1 cut(s) 1405
AcoI YGGCCR 1 cut(s) 1363
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 3 cut(s) 695, 755, 1110
AfiI CCNNNNNNNGG 2 cut(s) 193, 1505
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 6 cut(s) 134, 154, 438, 530, 623, 719
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 1 cut(s) 1424
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 2 cut(s) 319, 853
AlwI GGATC 1 cut(s) 1405
AlwNI CAGNNNCTG 2 cut(s) 1016, 1471
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 4 cut(s) 159, 1363, 1427, 1445
ApoI RAATTY 1 cut(s) 248
Asp700I GAANNNNTTC 3 cut(s) 433, 768, 798
AspLEI GCGC 1 cut(s) 823
AspS9I GGNCC 4 cut(s) 160, 775, 1289, 1446
AsuHPI GGTGA 1 cut(s) 308
AsuII TTCGAA 1 cut(s) 478
AsuNHI GCTAGC 1 cut(s) 1030
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 2 cut(s) 775, 1289
BalI TGGCCA 1 cut(s) 1365
BanI GGYRCC 1 cut(s) 1231
Bbv12I GWGCWC 1 cut(s) 714
BccI CCATC 4 cut(s) 388, 1243, 1321, 1345
BcgI CGANNNNNNTGC 4 cut(s) 545, 579, 1228, 1262
BciT130I CCWGG 1 cut(s) 1426
BcoDI GTCTC 2 cut(s) 319, 853
BfaI CTAG 3 cut(s) 951, 1031, 1503
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 1480
BglI GCCNNNNNGGC 1 cut(s) 1426
BglII AGATCT 1 cut(s) 737
BlpI GCTNAGC 1 cut(s) 1026
Bme1390I CCNGG 1 cut(s) 1426
Bme18I GGWCC 2 cut(s) 775, 1289
BmeT110I CYCGRG 1 cut(s) 366
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 4 cut(s) 160, 775, 1289, 1446
BmiI GGNNCC 1 cut(s) 1233
BmrFI CCNGG 1 cut(s) 1426
BmsI GCATC 5 cut(s) 84, 454, 835, 942, 1263
BmtI GCTAGC 1 cut(s) 1034
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 2 cut(s) 1098, 1290
Bpu1102I GCTNAGC 1 cut(s) 1026
Bpu14I TTCGAA 1 cut(s) 478
BpuEI CTTGAG 3 cut(s) 260, 621, 1154
BsaBI GATNNNNATC 1 cut(s) 1396
BsaJI CCNNGG 4 cut(s) 304, 744, 1047, 1424
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 1505
Bse1I ACTGG 5 cut(s) 333, 934, 937, 1363, 1571
Bse3DI GCAATG 2 cut(s) 430, 889
Bse8I GATNNNNATC 1 cut(s) 1396
BseBI CCWGG 1 cut(s) 1426
BseDI CCNNGG 4 cut(s) 304, 744, 1047, 1424
BseGI GGATG 4 cut(s) 349, 673, 933, 1043
BseJI GATNNNNATC 1 cut(s) 1396
BseLI CCNNNNNNNGG 2 cut(s) 193, 1505
BseMI GCAATG 2 cut(s) 430, 889
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 5 cut(s) 333, 934, 937, 1363, 1571
BseYI CCCAGC 1 cut(s) 1476
BsgI GTGCAG 3 cut(s) 573, 1200, 1514
Bsh1236I CGCG 1 cut(s) 821
BshFI GGCC 4 cut(s) 161, 1365, 1429, 1447
BshNI GGYRCC 1 cut(s) 1231
BsiHKAI GWGCWC 1 cut(s) 714
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 2 cut(s) 155, 1243
BslI CCNNNNNNNGG 2 cut(s) 193, 1505
BsmAI GTCTC 2 cut(s) 319, 853
BsmFI GGGAC 2 cut(s) 155, 1243
BsnI GGCC 4 cut(s) 161, 1365, 1429, 1447
BsoBI CYCGRG 1 cut(s) 366
Bsp119I TTCGAA 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 3 cut(s) 169, 737, 1397
Bsp1720I GCTNAGC 1 cut(s) 1026
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 3 cut(s) 725, 1292, 1418
BspANI GGCC 4 cut(s) 161, 1365, 1429, 1447
BspCNI CTCAG 1 cut(s) 485
BspFNI CGCG 1 cut(s) 821
BspLI GGNNCC 1 cut(s) 1233
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 1480
BspOI GCTAGC 1 cut(s) 1034
BspPI GGATC 1 cut(s) 1405
BspT104I TTCGAA 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 1231
BsrDI GCAATG 2 cut(s) 430, 889
BsrI ACTGG 5 cut(s) 333, 934, 937, 1363, 1571
BssECI CCNNGG 4 cut(s) 304, 744, 1047, 1424
BssMI GATC 3 cut(s) 169, 737, 1397
BssT1I CCWWGG 2 cut(s) 304, 744
Bst2UI CCWGG 1 cut(s) 1426
Bst4CI ACNGT 1 cut(s) 864
Bst6I CTCTTC 2 cut(s) 452, 984
BstAPI GCANNNNNTGC 3 cut(s) 1019, 1471, 1492
BstBI TTCGAA 1 cut(s) 478
BstC8I GCNNGC 3 cut(s) 1032, 1247, 1500
BstDEI CTNAG 2 cut(s) 472, 1026
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 4 cut(s) 349, 673, 933, 1043
BstFNI CGCG 1 cut(s) 821
BstHHI GCGC 1 cut(s) 823
BstKTI GATC 3 cut(s) 172, 740, 1400
BstMAI GTCTC 2 cut(s) 319, 853
BstMBI GATC 3 cut(s) 169, 737, 1397
BstNI CCWGG 1 cut(s) 1426
BstNSI RCATGY 2 cut(s) 551, 1249
BstSCI CCNGG 1 cut(s) 1424
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 821
BstX2I RGATCY 1 cut(s) 737
BstXI CCANNNNNNTGG 4 cut(s) 328, 1361, 1373, 1432
BstYI RGATCY 1 cut(s) 737
BsuRI GGCC 4 cut(s) 161, 1365, 1429, 1447
BtgI CCRYGG 1 cut(s) 304
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 4 cut(s) 349, 673, 933, 1043
BtsI GCAGTG 4 cut(s) 238, 519, 1183, 1469
BtsIMutI CAGTG 4 cut(s) 238, 519, 1183, 1469
BveI ACCTGC 1 cut(s) 1480
Cac8I GCNNGC 3 cut(s) 1032, 1247, 1500
CaiI CAGNNNCTG 2 cut(s) 1016, 1471
CfoI GCGC 1 cut(s) 823
Cfr13I GGNCC 4 cut(s) 160, 775, 1289, 1446
CviAII CATG 6 cut(s) 138, 305, 322, 548, 895, 1246
DdeI CTNAG 2 cut(s) 472, 1026
DpnI GATC 3 cut(s) 171, 739, 1399
DpnII GATC 3 cut(s) 169, 737, 1397
DraI TTTAAA 1 cut(s) 570
EaeI YGGCCR 1 cut(s) 1363
Eam1104I CTCTTC 2 cut(s) 452, 984
EarI CTCTTC 2 cut(s) 452, 984
EciI GGCGGA 2 cut(s) 1281, 1407
Eco130I CCWWGG 2 cut(s) 304, 744
Eco47I GGWCC 2 cut(s) 775, 1289
Eco57I CTGAAG 3 cut(s) 695, 755, 1110
Eco88I CYCGRG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 1424
EcoT14I CCWWGG 2 cut(s) 304, 744
ErhI CCWWGG 2 cut(s) 304, 744
FaeI CATG 6 cut(s) 141, 308, 325, 551, 898, 1249
FalI AAGNNNNNCTT 4 cut(s) 678, 710, 753, 785
FaqI GGGAC 2 cut(s) 155, 1243
FatI CATG 6 cut(s) 137, 304, 321, 547, 894, 1245
FauNDI CATATG 2 cut(s) 338, 1368
FblI GTMKAC 1 cut(s) 502
FokI GGATG 4 cut(s) 356, 680, 920, 1030
FspBI CTAG 3 cut(s) 951, 1031, 1503
GlaI GCGC 1 cut(s) 822
GsaI CCCAGC 1 cut(s) 1480
GsuI CTGGAG 2 cut(s) 1098, 1290
HaeIII GGCC 4 cut(s) 161, 1365, 1429, 1447
HapII CCGG 1 cut(s) 109
HhaI GCGC 1 cut(s) 823
Hin1II CATG 6 cut(s) 141, 308, 325, 551, 898, 1249
Hin6I GCGC 1 cut(s) 821
HinP1I GCGC 1 cut(s) 821
HincII GTYRAC 3 cut(s) 334, 956, 1062
HindII GTYRAC 3 cut(s) 334, 956, 1062
HinfI GANTC 5 cut(s) 80, 403, 634, 643, 905
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 4 cut(s) 334, 503, 956, 1062
Hpy188I TCNGA 3 cut(s) 40, 831, 1156
Hpy188III TCNNGA 5 cut(s) 366, 448, 539, 773, 1115
Hpy8I GTNNAC 4 cut(s) 334, 503, 956, 1062
HpyAV CCTTC 4 cut(s) 346, 423, 554, 849
HpyCH4III ACNGT 1 cut(s) 864
HpyCH4IV ACGT 4 cut(s) 175, 282, 659, 1523
HpyF3I CTNAG 2 cut(s) 472, 1026
HpySE526I ACGT 4 cut(s) 175, 282, 659, 1523
Hsp92II CATG 6 cut(s) 141, 308, 325, 551, 898, 1249
HspAI GCGC 1 cut(s) 821
Kzo9I GATC 3 cut(s) 169, 737, 1397
LmnI GCTCC 1 cut(s) 976
LweI GCATC 5 cut(s) 84, 454, 835, 942, 1263
MaeI CTAG 3 cut(s) 951, 1031, 1503
MaeII ACGT 4 cut(s) 175, 282, 659, 1523
MaeIII GTNAC 3 cut(s) 513, 810, 1467
MalI GATC 3 cut(s) 171, 739, 1399
MboI GATC 3 cut(s) 169, 737, 1397
MflI RGATCY 1 cut(s) 737
MhlI GDGCHC 1 cut(s) 714
MlsI TGGCCA 1 cut(s) 1365
MluCI AATT 7 cut(s) 61, 154, 248, 480, 485, 606, 1405
MluNI TGGCCA 1 cut(s) 1365
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 2 cut(s) 475, 645
Mox20I TGGCCA 1 cut(s) 1365
MroXI GAANNNNTTC 3 cut(s) 433, 768, 798
MscI TGGCCA 1 cut(s) 1365
MseI TTAA 7 cut(s) 381, 483, 569, 696, 759, 891, 1191
MslI CAYNNNNRTG 2 cut(s) 285, 893
Msp20I TGGCCA 1 cut(s) 1365
MspA1I CMGCKG 2 cut(s) 902, 1016
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 1426
MvaI CCWGG 1 cut(s) 1426
MvnI CGCG 1 cut(s) 821
NcoI CCATGG 1 cut(s) 304
NdeI CATATG 2 cut(s) 338, 1368
NdeII GATC 3 cut(s) 169, 737, 1397
NheI GCTAGC 1 cut(s) 1030
NlaIII CATG 6 cut(s) 141, 308, 325, 551, 898, 1249
NlaIV GGNNCC 1 cut(s) 1233
NmeAIII GCCGAG 1 cut(s) 1028
NmuCI GTSAC 1 cut(s) 1467
NspI RCATGY 2 cut(s) 551, 1249
NspV TTCGAA 1 cut(s) 478
PaeI GCATGC 1 cut(s) 1249
PaeR7I CTCGAG 1 cut(s) 366
PaqCI CACCTGC 1 cut(s) 1480
PdmI GAANNNNTTC 3 cut(s) 433, 768, 798
PfeI GAWTC 4 cut(s) 80, 403, 643, 905
PflMI CCANNNNNTGG 1 cut(s) 1505
PleI GAGTC 1 cut(s) 628
PpsI GAGTC 1 cut(s) 628
Psp1406I AACGTT 1 cut(s) 1523
Psp6I CCWGG 1 cut(s) 1424
PspFI CCCAGC 1 cut(s) 1476
PspGI CCWGG 1 cut(s) 1424
PspN4I GGNNCC 1 cut(s) 1233
PspPI GGNCC 4 cut(s) 160, 775, 1289, 1446
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 2 cut(s) 1016, 1471
PsuI RGATCY 1 cut(s) 737
PvuII CAGCTG 2 cut(s) 902, 1016
RseI CAYNNNNRTG 2 cut(s) 285, 893
SaqAI TTAA 7 cut(s) 381, 483, 569, 696, 759, 891, 1191
Sau3AI GATC 3 cut(s) 169, 737, 1397
Sau96I GGNCC 4 cut(s) 160, 775, 1289, 1446
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 1 cut(s) 1426
SduI GDGCHC 1 cut(s) 714
SfaNI GCATC 5 cut(s) 84, 454, 835, 942, 1263
SfcI CTRYAG 1 cut(s) 267
Sfr274I CTCGAG 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 478
SinI GGWCC 2 cut(s) 775, 1289
SlaI CTCGAG 1 cut(s) 366
SmiMI CAYNNNNRTG 2 cut(s) 285, 893
SmlI CTYRAG 4 cut(s) 275, 366, 636, 1133
SmoI CTYRAG 4 cut(s) 275, 366, 636, 1133
SphI GCATGC 1 cut(s) 1249
Sse9I AATT 7 cut(s) 61, 154, 248, 480, 485, 606, 1405
SsiI CCGC 3 cut(s) 725, 1292, 1418
SspI AATATT 1 cut(s) 850
SspMI CTAG 3 cut(s) 951, 1031, 1503
StyD4I CCNGG 1 cut(s) 1424
StyI CCWWGG 2 cut(s) 304, 744
TaaI ACNGT 1 cut(s) 864
TaiI ACGT 4 cut(s) 178, 285, 662, 1526
TaqI TCGA 6 cut(s) 78, 367, 478, 1238, 1442, 1579
TasI AATT 7 cut(s) 61, 154, 248, 480, 485, 606, 1405
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 4 cut(s) 80, 403, 643, 905
Tru1I TTAA 7 cut(s) 381, 483, 569, 696, 759, 891, 1191
Tru9I TTAA 7 cut(s) 381, 483, 569, 696, 759, 891, 1191
TscAI CASTG 4 cut(s) 238, 526, 1183, 1476
TseFI GTSAC 1 cut(s) 1467
Tsp45I GTSAC 1 cut(s) 1467
TspDTI ATGAA 6 cut(s) 261, 303, 360, 402, 558, 1002
TspGWI ACGGA 2 cut(s) 39, 364
TspRI CASTG 4 cut(s) 238, 526, 1183, 1476
Van91I CCANNNNNTGG 1 cut(s) 1505
VpaK11BI GGWCC 2 cut(s) 775, 1289
XapI RAATTY 1 cut(s) 248
XceI RCATGY 2 cut(s) 551, 1249
XhoI CTCGAG 1 cut(s) 366
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 3 cut(s) 433, 768, 798
XspI CTAG 3 cut(s) 951, 1031, 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.